mRNA_Ecto-sp13_S_contig11091.951.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11091.951.1
Unique NamemRNA_Ecto-sp13_S_contig11091.951.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11091.951.1 vs. uniprot
Match: A0A6H5KGJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ0_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 6.020e-60
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 SVKGIAVEQRCEVQPGGRRGVVEYVGEVEGLQAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPFDELDDDEDEDEI 285
            SV+GIAVEQRCEVQPGGRRGVVEYVGEVEGLQAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPFDELDDDEDEDEI
Sbjct:  184 SVEGIAVEQRCEVQPGGRRGVVEYVGEVEGLQAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPFDELDDDEDEDEI 278
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BLAST of mRNA_Ecto-sp13_S_contig11091.951.1 vs. uniprot
Match: D8LGS8_ECTSI (Putative: tubulin specific chaperone n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS8_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 3.950e-39
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:   91 LQAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPFDELDDDEDEDEI 285
            + AGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPFDELDDDEDEDEI
Sbjct:    5 IVAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPFDELDDDEDEDEI 69
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BLAST of mRNA_Ecto-sp13_S_contig11091.951.1 vs. uniprot
Match: A0A7R9UBU7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBU7_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.400e-34
Identity = 59/94 (62.77%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:    4 VKGIAVEQRCEVQPGGRRGVVEYVGEVEGLQAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPFDELDDDEDEDEI 285
            +KG+ + QRCEV PGGRRGV+EY+G+V+GL  GYW GVRFDEPVG+GDGTV+G+R+F+C+  +GGF+R +NV  GDFPER   +L +D DEDE+
Sbjct:  178 MKGLELGQRCEVDPGGRRGVLEYLGKVDGLADGYWAGVRFDEPVGKGDGTVKGQRIFDCEARYGGFIRPRNVRCGDFPER---DLLEDSDEDEL 268
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BLAST of mRNA_Ecto-sp13_S_contig11091.951.1 vs. uniprot
Match: A0A7S2HN54_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HN54_9STRA)

HSP 1 Score: 120 bits (302), Expect = 8.490e-32
Identity = 60/95 (63.16%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 SVKGIAVEQRCEVQPGGRRGVVEYVGEVEGLQAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPFDELDDDEDEDEI 285
            SV G+ V  RCEV PG RRG + Y+GE  GL+ G+WVGVRFDEP+G+GDGT +G R FEC+  FG FVRGKNVT GDFPE  FD    D+ EDEI
Sbjct:  173 SVAGLEVGGRCEVMPGARRGEIAYIGE-RGLEKGFWVGVRFDEPMGKGDGTSKGTRYFECEPSFGSFVRGKNVTMGDFPEEGFD----DDSEDEI 262
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BLAST of mRNA_Ecto-sp13_S_contig11091.951.1 vs. uniprot
Match: A0A7S2W9K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9K5_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.190e-31
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 SVKGIAVEQRCEVQPGGRRGVVEYVGEVEGL--QAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPFDELDDDEDEDEI 285
            +V+GI +  RCEV PG RRG V +VGEVEGL  + G+WVGV FDEPVG+ DGTV+G+ +FEC  GFGGF+RG+N+T GDFPE   D     EDEDEI
Sbjct:  201 TVEGIKIGDRCEVMPGARRGTVAFVGEVEGLGSKGGHWVGVTFDEPVGKSDGTVKGQTVFECPPGFGGFIRGRNLTVGDFPEEDLDL----EDEDEI 293
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BLAST of mRNA_Ecto-sp13_S_contig11091.951.1 vs. uniprot
Match: A0A7S1TNN8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNN8_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.500e-31
Identity = 54/95 (56.84%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    4 VKGIAVEQRCEVQPGGRRGVVEYVGEVEGLQAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPF-DELDDDEDEDEI 285
            ++G++V +RCE  PGGRRGV+ ++G+V+GL  GYW GV+FDEPVG+ DGTV+G R+F+C+  FGGF+R +NV +GD+PER   D+ D D+DEDE+
Sbjct:  178 LQGLSVGERCEADPGGRRGVLMFLGQVDGLADGYWAGVKFDEPVGKADGTVKGVRVFDCEPRFGGFIRPRNVKTGDYPERDLLDDSDLDDDEDEL 272
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BLAST of mRNA_Ecto-sp13_S_contig11091.951.1 vs. uniprot
Match: A0A835ZAK6_9STRA (Putative tubulin-specific chaperone B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.630e-31
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:    1 SVKGIAVEQRCEVQPGGRRGVVEYVGEVEGLQAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPF-DELDDDEDE 276
            SV+G+ V  RCEV PGGRRG V ++GEVEG+  GYWVGVRFDEPVGRG+GTV+GK++F  ++    F+R KNV  GD+PE+   DELDD EDE
Sbjct:  184 SVEGMKVGDRCEVSPGGRRGAVMFLGEVEGMAPGYWVGVRFDEPVGRGNGTVKGKQIFVTEEKHASFIRPKNVAVGDYPEKDLLDELDDSEDE 276
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BLAST of mRNA_Ecto-sp13_S_contig11091.951.1 vs. uniprot
Match: A0A7S2D093_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D093_9STRA)

HSP 1 Score: 119 bits (297), Expect = 9.720e-31
Identity = 58/96 (60.42%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:    1 SVKGIAVEQRCEVQPGGRRGVVEYVGEVEGLQAG-YWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPFDELDDDEDEDEI 285
            +V G+ V  RCE QPG RRG + YVGEV GL  G +W+GVRFDEPVGR +G V+G+ +FEC + +GGF+RGKNVT GDFPE   D  D DE+EDE+
Sbjct:  200 TVVGMEVGMRCECQPGARRGEIAYVGEVAGLSGGGHWLGVRFDEPVGRSNGVVKGETIFECMERYGGFLRGKNVTVGDFPEAELDLEDTDEEEDEL 295
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BLAST of mRNA_Ecto-sp13_S_contig11091.951.1 vs. uniprot
Match: M4B8F5_HYAAE (CAP-Gly domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8F5_HYAAE)

HSP 1 Score: 113 bits (282), Expect = 1.790e-29
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 SVKGIAVEQRCEVQPGGRRGVVEYVGEVEGLQAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPER-PFDELDDDEDE 276
            SV  + V  RCEVQPGGRRG V+Y+G+V  +  G+WVGV FDEPVG+G+G+V+G   FEC++ +GGFVR  NVT GDFP   PF +L DDEDE
Sbjct:  105 SVAHMNVNDRCEVQPGGRRGRVQYLGQVPEIAPGFWVGVHFDEPVGKGNGSVKGTAYFECEQKYGGFVRPYNVTVGDFPALDPFADLSDDEDE 197
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BLAST of mRNA_Ecto-sp13_S_contig11091.951.1 vs. uniprot
Match: K3X7H1_GLOUD (CAP-Gly domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7H1_GLOUD)

HSP 1 Score: 114 bits (285), Expect = 3.660e-29
Identity = 54/93 (58.06%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 SVKGIAVEQRCEVQPGGRRGVVEYVGEVEGLQAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFP-ERPFDELDDDEDE 276
            + +G++V  RCEVQPGGRRG V Y+GE+  +  GYWVGV+FDEP+G+G+GTV+GK  F C   + GF+R  NVT GDFP E PF +LDD +DE
Sbjct:  179 TTEGMSVGDRCEVQPGGRRGQVAYLGEIPEIAPGYWVGVKFDEPLGKGNGTVKGKVYFSCDDKYAGFIRPHNVTVGDFPVEDPFADLDDSDDE 271
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11091.951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGJ0_9PHAE6.020e-6098.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGS8_ECTSI3.950e-3996.92Putative: tubulin specific chaperone n=1 Tax=Ectoc... [more]
A0A7R9UBU7_9STRA1.400e-3462.77Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2HN54_9STRA8.490e-3263.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2W9K5_9STRA1.190e-3161.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1TNN8_9STRA1.500e-3156.84Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835ZAK6_9STRA6.630e-3162.37Putative tubulin-specific chaperone B n=1 Tax=Trib... [more]
A0A7S2D093_9STRA9.720e-3160.42Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
M4B8F5_HYAAE1.790e-2960.22CAP-Gly domain-containing protein n=1 Tax=Hyaloper... [more]
K3X7H1_GLOUD3.660e-2958.06CAP-Gly domain-containing protein n=1 Tax=Globispo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11091contigEcto-sp13_S_contig11091:2..1058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score132.9
Seed ortholog evalue8.1e-29
Seed eggNOG ortholog2880.D8LGS8
Preferred nameTBCB
Model size288
KEGG koko:K10423,ko:K17262,ko:K21766
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007389,GO:0008150,GO:0009798,GO:0009987,GO:0009994,GO:0015630,GO:0016043,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0030010,GO:0030154,GO:0031122,GO:0032501,GO:0032502,GO:0032504,GO:0034622,GO:0035088,GO:0035089,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051704,GO:0061162,GO:0061245,GO:0061339,GO:0065003,GO:0071840,GO:0071944,GO:0072686,GO:0097435,GO:0099568
Exons2
EggNOG free text desc.cell differentiation
EggNOG OGsKOG3206@1,KOG3206@2759
Ec32 ortholog descriptionalpha-tubulin folding cofactor
Ec32 orthologEc-07_005160.1
Cds size288
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462575.5710185-CDS-Ecto-sp13_S_contig11091:1..971681462575.5710185-CDS-Ecto-sp13_S_contig11091:1..97Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11091 2..97 +
1681462575.58958-CDS-Ecto-sp13_S_contig11091:866..10581681462575.58958-CDS-Ecto-sp13_S_contig11091:866..1058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11091 867..1058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11091.951.1prot_Ecto-sp13_S_contig11091.951.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11091 2..1058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11091.951.1

>prot_Ecto-sp13_S_contig11091.951.1 ID=prot_Ecto-sp13_S_contig11091.951.1|Name=mRNA_Ecto-sp13_S_contig11091.951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
SVKGIAVEQRCEVQPGGRRGVVEYVGEVEGLQAGYWVGVRFDEPVGRGDG
TVRGKRLFECQKGFGGFVRGKNVTSGDFPERPFDELDDDEDEDEI*
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mRNA from alignment at Ecto-sp13_S_contig11091:2..1058+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11091.951.1 ID=mRNA_Ecto-sp13_S_contig11091.951.1|Name=mRNA_Ecto-sp13_S_contig11091.951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1057bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11091:2..1058+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGTGAAAGGGATCGCCGTGGAGCAACGGTGCGAAGTGCAGCCGGGGGG
CAGGAGAGGAGTGGTGGAGTACGTGGGAGAGGTGGAAGGCTTGCAGGTTG
GTCGTTGTTTGTTGTTTCGTTTTCTCATTTGAAGCCCGTGCGGCAATTAC
AGATATTGAGAGTTGTTTGGTCATCCCCGAGATCTGCAAGGAGCACACTA
ACGGAATACTTCGAAAATGGAATGATAAGGAGCATCATTCACCAACTGCA
AGCTGCTCTATGAGTTCGTGTTCAGGGCGTAGATAGTGCCTCCGCTAGGG
GCTCGGGCATCGATGGAGTGAGCACGGTGGTGTGAACCGTGCTCGGGTTT
TGTTCCGTACGAAAGTGGTGTCTCTTCCAGATGTCAATGCTGACATCGAG
TGCCAAATTGCTGCTTGGTTGGGTCCAGAAAGATGTCACTCAAACACATT
TCGATATCGAACACATGAAAAAACATGTTGCTCATAGTTTGCGTAGTCGT
CGCTGCATGCTTTCCTGTAGTCAACGGCCCAAACATTAGATGCTTGGGAT
AGTCGTCGCGAGATCGATGCTGTACGTCAGGTCTGGACACGTTTCCCGTG
GCCCCGTGACTGTTGGTATGGTGGTCCCCGTAGACGCCTGACGCTTGATA
GTCTACGCATCTCTGTTGATTGCTATCGTTTGGAGTCGTTTATCGAAGCT
CATTTATTCCTCTCTTGATTTTTTCTGGATGCATCGATGAGCTTAATTTC
TCTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTTCTCTGT
CTCTGTGTCTCTCTCTCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTTTCT
CTCTTTCTACGCCAGGCGGGCTACTGGGTGGGTGTTCGCTTCGACGAGCC
GGTGGGCCGCGGGGACGGTACGGTGCGAGGGAAGCGCCTGTTCGAGTGCC
AGAAGGGCTTCGGGGGCTTCGTGCGCGGGAAGAACGTGACGTCCGGGGAT
TTCCCGGAGAGGCCGTTCGACGAATTGGACGACGACGAAGACGAGGACGA
GATTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11091:2..1058+

>mRNA_Ecto-sp13_S_contig11091.951.1 ID=mRNA_Ecto-sp13_S_contig11091.951.1|Name=mRNA_Ecto-sp13_S_contig11091.951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11091:2..1058+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGTGAAAGGGATCGCCGTGGAGCAACGGTGCGAAGTGCAGCCGGGGGG
CAGGAGAGGAGTGGTGGAGTACGTGGGAGAGGTGGAAGGCTTGCAGGCGG
GCTACTGGGTGGGTGTTCGCTTCGACGAGCCGGTGGGCCGCGGGGACGGT
ACGGTGCGAGGGAAGCGCCTGTTCGAGTGCCAGAAGGGCTTCGGGGGCTT
CGTGCGCGGGAAGAACGTGACGTCCGGGGATTTCCCGGAGAGGCCGTTCG
ACGAATTGGACGACGACGAAGACGAGGACGAGATTTAG
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