mRNA_Ecto-sp13_S_contig11080.946.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11080.946.1
Unique NamemRNA_Ecto-sp13_S_contig11080.946.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11080.946.1 vs. uniprot
Match: D8LIW1_ECTSI (Protein phosphatase 2C-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIW1_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.480e-36
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:  103 MGCSSSRDENGDVVSFERSEPLLDFKCKGFEHGGVQGAQCAVQGWRKTMEDVALVQFGVPPRE 291
            MGCSSSRDENG+VVSFERSEPLLDFKCKGFEHGGVQ AQCAVQGWRKTMEDVALVQFGVPPRE
Sbjct:    1 MGCSSSRDENGEVVSFERSEPLLDFKCKGFEHGGVQVAQCAVQGWRKTMEDVALVQFGVPPRE 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11080.946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIW1_ECTSI2.480e-3696.83Protein phosphatase 2C-like n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11080contigEcto-sp13_S_contig11080:2894..4948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size508
Hectar predicted targeting categoryother localisation
Exons3
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462575.0508022-UTR-Ecto-sp13_S_contig11080:2893..29051681462575.0508022-UTR-Ecto-sp13_S_contig11080:2893..2905Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11080 2894..2905 -
1681462575.0840127-UTR-Ecto-sp13_S_contig11080:4824..49481681462575.0840127-UTR-Ecto-sp13_S_contig11080:4824..4948Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11080 4825..4948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462575.0598629-CDS-Ecto-sp13_S_contig11080:2905..31101681462575.0598629-CDS-Ecto-sp13_S_contig11080:2905..3110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11080 2906..3110 -
1681462575.0680602-CDS-Ecto-sp13_S_contig11080:3336..34411681462575.0680602-CDS-Ecto-sp13_S_contig11080:3336..3441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11080 3337..3441 -
1681462575.0761406-CDS-Ecto-sp13_S_contig11080:4762..48241681462575.0761406-CDS-Ecto-sp13_S_contig11080:4762..4824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11080 4763..4824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11080.946.1prot_Ecto-sp13_S_contig11080.946.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11080 2906..4824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11080.946.1

>prot_Ecto-sp13_S_contig11080.946.1 ID=prot_Ecto-sp13_S_contig11080.946.1|Name=mRNA_Ecto-sp13_S_contig11080.946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
MRTETSSRSKDQSPFWTSNARVSSMEACKVRSARSKAGARPWRTWPWCSS
ASLQERSRMLNFQLETSNRRGRLILLHPAWLRGTSATCDVLSARRYEVIP
FQAYGHSRPSGLLFSQLWPTRGR*
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mRNA from alignment at Ecto-sp13_S_contig11080:2894..4948-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11080.946.1 ID=mRNA_Ecto-sp13_S_contig11080.946.1|Name=mRNA_Ecto-sp13_S_contig11080.946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2055bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11080:2894..4948- (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGGGACGCGCGGGTCACGTGTGTCTGTCTTGTGTTGGCACAAGGCGC
AATAACACACAACCGCGGGCCTGTGTGTGCTAGCCACAGGGCTGTGGGTT
CCATGGGTTGCTCTAGTTCGAGAGATGAGAACGGAGACGTCGTCTCGTTC
GAAAGATCAGAGCCCCTTCTGGACTTCAAATGCAAGGTGGGATCCGCTTG
ACAAGTACGGTACACTGGCTGCAAGGTAGTTGTTGTCACAAGCGCGGACT
GATCTATACCTTGCGCCTTTCGTGTAATGCTGAAACAAGCACTGAGCACT
CAGGAAATGCAGCAGGCAGCCGCAATGCTGCGGTTTTCATGGGGTGTGTG
GCGAAGGTATTCTCCCACCCTTCCTGCTGTATATGGTACAGCACCGGCGG
TTTTTCGACGATGAATTTTCGGCGGTGCTATAAAAAAACGTACATCACCG
CCAATGCGTAGCCGACATTCACGAGGAGTGGGCTGCCGGGTCATCCCGCG
TAACAACAACGTGCGGTATGCCAACACATAGGCTTCTTCCCATCCTCGTA
CGTCCACATGCCGGAGCATTACAGCAGGTTCCAAAGCACAGCAACAGCAG
TCGATATTTTTGCTACCTGCAGATCTCCCCGCATGTGTAGACGACGTGAA
CAGCAGTAACTGCTGTACTCAAACGACTGCAGCGATACGTGAAACGTCCT
GCGTCTCAACCGACTTGATCAGTTGCTCTCGACGCTTTGGAAAGCATCCT
ATTCTCTGACGCGCTGCCGATCTGGAGCTACGTTGCCGCTCTAACTGGGT
GGTGAATTTTGTAATTTTTCAGTGCGGTTCCGTATTGTTTTCGTCAACTT
TTGTAGTTGAGCACCTACTTCCTGGCGACCCAAACCTTGCGGTGTATTCA
AGCAAAGGAAGGCATATCGAAGACTTTCGGCTGCACGCACCGTACAACTT
ATCACCGAGGCGGGAACGGCGTGTGCATATCCACTGATGTACTACACACG
AGATGCGTCCCACCGCCCGTTACCTTTTTGGTTCCCTAGACACCCCATGG
ACTGCTGTTGAAGGAACTTGGAACTTTGCTGCACGCGTAACCTGTCGTCG
TTCGATGCGGAACGGACACAGCACAATTTGTTTGTGTCCCCATGACCCTT
ACTGCACACGGCGCGCAGCATTTGGTGGGTTTCCGTTAATCTTGGCGATG
TGTTGAATGTGGCCCCGACAAACCCTATTATCCCGACCCACGCTCCCGGG
GGCAGTTGGCTGAAGACCTCCTTGAGGGCTTCGTTGTGGGGCGTGAAGAA
CCTCGGCAGCCCCTCCATTACCTCGTCCGTTACCAACAAACATCCACGGG
TGCACGCGCGCGCATACGCGCGGCGGCGGGGGGGGGGGGATCCGTTCGCT
GCGTACCTTTCGTCATCTAGCCGTTTGACCCCCCGTGCATCCATTCATGT
CACAAACTAAACGACTTGATGCACACACGCGGGCCCCCTTTTTTCCTCTC
TTGAAAGGGTTTCGAGCATGGAGGCGTGCAAGGTGCGCAGTGCGCGGTCC
AAGGCTGGCGCAAGACCATGGAGGACGTGGCCTTGGTGCAGTTCGGCGTC
CCTCCAAGAGAGGTACATATGTGTATGGATGACGTGACATGACTGGAGTG
GGCGGGGGCAGCGCTACCGTGCCACAAAGCGACAGGACTGGATCAAAAAG
CATCGGCACATGGATGCATACCCAGCAGGCAACCACGCAATTCGCCATTC
TCGTCCATACTAAAAAATGGAAATGTTGACACTCACGACCCCTTTCAATA
CTCGGCGCACTCCGGGACTTCCACCCACATCCAACAAGGTCGAGGATGCT
GAACTTCCAATTGGAAACTTCAAACCGCCGGGGGCGACTGATCCTCTTGC
ACCCCGCTTGGCTGCGCGGAACATCTGCGACCTGTGATGTTCTGTCCGCA
CGGCGGTATGAAGTCATCCCGTTTCAGGCTTACGGCCATTCAAGACCATC
TGGCTTATTGTTTTCCCAGTTATGGCCCACCCGGGGGAGATAGTGGGATA
TCATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11080:2894..4948-

>mRNA_Ecto-sp13_S_contig11080.946.1 ID=mRNA_Ecto-sp13_S_contig11080.946.1|Name=mRNA_Ecto-sp13_S_contig11080.946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11080:2894..4948- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAACGGAGACGTCGTCTCGTTCGAAAGATCAGAGCCCCTTCTGGAC
TTCAAATGCAAGGGTTTCGAGCATGGAGGCGTGCAAGGTGCGCAGTGCGC
GGTCCAAGGCTGGCGCAAGACCATGGAGGACGTGGCCTTGGTGCAGTTCG
GCGTCCCTCCAAGAGAGGTCGAGGATGCTGAACTTCCAATTGGAAACTTC
AAACCGCCGGGGGCGACTGATCCTCTTGCACCCCGCTTGGCTGCGCGGAA
CATCTGCGACCTGTGATGTTCTGTCCGCACGGCGGTATGAAGTCATCCCG
TTTCAGGCTTACGGCCATTCAAGACCATCTGGCTTATTGTTTTCCCAGTT
ATGGCCCACCCGGGGGAGATAG
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