mRNA_Ecto-sp13_S_contig11075.940.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11075.940.1
Unique NamemRNA_Ecto-sp13_S_contig11075.940.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11075.940.1 vs. uniprot
Match: D7FPV1_ECTSI (Similar to U3 small nucleolar RNA interacting protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPV1_ECTSI)

HSP 1 Score: 514 bits (1324), Expect = 7.610e-177
Identity = 425/444 (95.72%), Postives = 428/444 (96.40%), Query Frame = 1
Query:   43 MPPKRSIGAGGSRGMSSRTGXXXXXXXXXEPRTAKRPRQQAQSALAWGNDDPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRETAEEKRLRLARDVLMKLDAEQRENREEGTDEEDDDAPGDYIGDRLAHARLEATGQLYREVAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRADTVVETFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINAIDSWRKERLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPAVLVPAAHGYSAVGIPR*ISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQVSS 1374
            MPPKRSIGA GSRGMSSRTG         EPRTAKRPRQQAQSALAWG+DDPD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRETAEEKRLRLARDVLMKLDAEQRENREEGTDEEDDDAPGDYIGDRLAHARLEATGQLYREVAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCR DTVVETFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINAIDSWRKERLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KKPA+LVPAAHGYSAVGIPR ISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQV+S
Sbjct:    1 MPPKRSIGAAGSRGMSSRTGSSRGRSSRQEPRTAKRPRQQAQSALAWGDDDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRETAEEKRLRLARDVLMKLDAEQRENREEGTDEEDDDAPGDYIGDRLAHARLEATGQLYREVAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINAIDSWRKERLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMKKKPAMLVPAAHGYSAVGIPRWISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQVAS 444          
BLAST of mRNA_Ecto-sp13_S_contig11075.940.1 vs. uniprot
Match: A0A835Z4V0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V0_9STRA)

HSP 1 Score: 188 bits (478), Expect = 6.980e-51
Identity = 178/383 (46.48%), Postives = 222/383 (57.96%), Query Frame = 1
Query:  316 ETAEEKRLRLARDVLMKLDAEQRENREEGTDEEDDDAPGDY---------------------IGDRLAHARLEATGQLYREVAKGLQGQQISP-TAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSV--------KAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRADTVVETFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINAIDSWRKERLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPAVLVPAAHGYSAVGIPR*ISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQVSS 1374
            ETAEEKRLRLA++ L KL  E       G+DE  D A GD                      +  RL   RL A+GQL R +A  L+G  +S  T +R + GH+L+ TCV LS DD TAFSGSKDN+++RWDVETG R  +   W+K P  +  +         + H  EVL +A S DGRY+A+GGRD+L+ VWDCR D VV +F                                               E+NA+D++R+ER V+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    KKP  +  AAHG    G+   + A   ++ SDL V+GS+DG +RLW  D +AR+LEQV++
Sbjct:   34 ETAEEKRLRLAQEYLAKLGGEL------GSDE--DAAAGDXXXXXXXXGEDGVINRGVSEDRLARRLERERLAASGQLQRRLAAALRGADLSDATRIRALSGHRLAVTCVALSGDDATAFSGSKDNAVLRWDVETGARKVLCARWKKRPAAERAAXXXXXXXXEQEHCAEVLAIAASTDGRYVAAGGRDKLVRVWDCRTDEVVASFSGHRDAVTALAFRHGSYSLYSGSADRSIKHWGLSEMAYVETLFGHQGEVNALDAFRRERAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNLKKKPVAVAAAAHGVGRNGVAPWVCAAAAVRSSDLAVTGSSDGYIRLWHCDTDARTLEQVNA 408          
BLAST of mRNA_Ecto-sp13_S_contig11075.940.1 vs. uniprot
Match: W7U1Y2_9STRA (U3 small nucleolar rna-interacting protein 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1Y2_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.790e-39
Identity = 157/380 (41.32%), Postives = 199/380 (52.37%), Query Frame = 1
Query:  316 ETAEEKRLRLARDVLMKLDAEQ-RENREEGTDEEDDDAPGDYIGDRLAHARLEATGQLYREVAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRV-TMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRAD--------TVVETFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINAIDSWRKERLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------KKPAVLVPAAHGYSAVGIPR*ISAIGCLKQSDLVVSGSNDGSVRLWRADV----EARSLEQVSS 1374
            ETA E R+RLA+  L +++A    EN EE + +ED D   D +G  L   RL+A+G L R +A  L     +      ++GHKL+PTCV ++ D+ TAF+G KDN+I+R+D+E+G+R  T+   WR   GG+    ++H KEVL LAVS DGRYLA+GGRD+ I +WD R            V+TF  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            EIN ID+WR+ER VT                                                                    KKP  +VPAAHG    G  R IS++  +K +DLV SGSNDG VRLWRA      +  SLE   +
Sbjct:   87 ETAAEMRVRLAKQYLAQMEAALGSENDEEESHDEDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWR---GGQ--GYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHG----GNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGA 457          
BLAST of mRNA_Ecto-sp13_S_contig11075.940.1 vs. uniprot
Match: A0A8K1FMR6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMR6_PYTOL)

HSP 1 Score: 147 bits (371), Expect = 1.790e-35
Identity = 155/353 (43.91%), Postives = 205/353 (58.07%), Query Frame = 1
Query:  313 RETAEEKRLRLARDVLMKLDAEQRENREEGTDEEDDDAPGDYIGDRLAHARLEATGQLYREVAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVP-SVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRADTVVETFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINAIDSWRKERLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPAVLVPAAHGYSAVGIPR*ISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQV 1368
            RETA+EKRLRLA++ L K+  ++ +  E+ T  E+       +  RL    LEA G+L+++VA   +  +    + R ++GHKL  T + LS D  TAFS +KD +I+RWD+ T  +  +L     LP   +  + K H + VL LA++ DG+YLASGG D+L+ VWD   + V+ETF XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +N +D+  KER+V+                                                       KKPA +VP AHG       R IS++  + ++DLV SGS DGS+RLWRAD+ AR+LE V
Sbjct:   79 RETAQEKRLRLAKEYLSKITEQEDDXXEDTTGVEE------RVTARLHQDALEAMGKLFKQVASKYEEFEFDTDSTRFLKGHKLPVTALCLSEDGKTAFSAAKDGTILRWDLATQTKTKLL-----LPKDDISKATKDHERCVLALALNSDGKYLASGGYDKLLRVWDAEKNEVIETFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNGLDALYKERVVSCGRDRSVRMWKIPEETQLVFYGNTGSMDCVKMINDEYYVTGGDDGSLSLWFNGR-KKPAYVVPNAHGAG-----RWISSVTVMPRTDLVASGSCDGSIRLWRADLGARTLEPV 414          
BLAST of mRNA_Ecto-sp13_S_contig11075.940.1 vs. uniprot
Match: A0A6H5KZR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZR0_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 7.110e-35
Identity = 96/214 (44.86%), Postives = 101/214 (47.20%), Query Frame = 1
Query:  733 EVLTLAVSGDGRYLASGGRDRLINVWDCRADTVVETFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINAIDSWRKERLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPAVLVPAAHGYSAVGIPR*ISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQVSS 1374
            +VLTLAVSGDGRYLASGGRDRLINVWDCR DT+VETF                                                  A+ S   +R V                                                        KKPAVLVPAAHGYSAVGIPR ISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQV+S
Sbjct:    6 KVLTLAVSGDGRYLASGGRDRLINVWDCRTDTLVETFRGHQDTVSSLAFRANSL---------------------------------ALFSGSHDRCVKVRLWKVLEDSHLVFRPVGGGSIDCVRMLNEDWFTTGGEDGSLALWFAMK------KKPAVLVPAAHGYSAVGIPRWISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQVAS 180          
BLAST of mRNA_Ecto-sp13_S_contig11075.940.1 vs. uniprot
Match: A0A2D4BXX5_PYTIN (U3 small nucleolar RNA-interacting protein, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXX5_PYTIN)

HSP 1 Score: 144 bits (364), Expect = 9.300e-35
Identity = 112/357 (31.37%), Postives = 162/357 (45.38%), Query Frame = 1
Query:  316 ETAEEKRLRLARDVLMKLDAEQRENREEGTDEEDDDAPG--DYIGDRLAHARLEATGQLYREVAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKA-HSKEVLTLAVSGDGRYLASGGRDRLINVWDCRADT--VVETFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINAIDSWRKERLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPAVLVPAAHGYSAVGIPR*ISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQVS 1371
            E+A++KR+RLA++ L K+ A++ +         DDD  G  + +G RL    LEA G+L++EVA         P + R +RGHKLSPT V LS D  TAFS SKD +I+RWD+ T ++  +     +LP   V + K  H + VL LA+S DG++LASGGRD+L+ VWD  + T  ++ETF                                               E+ A+DS  +ER+V+                                                       KKP  +V  AHG       R IS++  + ++DLV SGS+DG +RLWRAD+  R+L  V+
Sbjct:   91 ESAQDKRIRLAKEYLTKITAQEADG--------DDDTSGVDERVGARLQQDALEAMGKLFKEVAA-----HFGPESTRFLRGHKLSPTSVCLSEDGKTAFSASKDGAILRWDLATQQKTRL-----ELPKDDVSTAKTDHERCVLALALSSDGKFLASGGRDKLLRVWDASSATPRLLETFQGHRDAVSALTFRQRSHMLFSGSLDRCIKHWNLTEMGYVETLFGHQSEVLALDSLYRERVVSCGRDRSVRMWKIPEETHLVLYGGTGSIDCVRMINEEYYVTGGDDGALTLWFNGR-KKPVHVVRDAHGAG-----RWISSVAVMPRTDLVASGSSDGVIRLWRADLAGRALVPVA 423          
BLAST of mRNA_Ecto-sp13_S_contig11075.940.1 vs. uniprot
Match: D0MYR8_PHYIT (U3 small nucleolar RNA-interacting protein, putative n=9 Tax=Phytophthora TaxID=4783 RepID=D0MYR8_PHYIT)

HSP 1 Score: 140 bits (352), Expect = 5.260e-33
Identity = 133/357 (37.25%), Postives = 186/357 (52.10%), Query Frame = 1
Query:  319 TAEEKRLRLARDVLMKLDAEQRENREEGTDEEDDDAPG--DYIGDRLAHARLEATGQLYREVAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKE---VLTLAVSGDGRYLASGGRDRLINVWDCRADTVVETFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINAIDSWRKERLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPAVLVPAAHGYSAVGIPR*ISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQVSS 1374
            TA+EKRLRLA++ L K+ A+     E GTD+EDD+  G  + +G RL    LEA G+L+++VA      +    + + ++GH+L  T + L  D  TAFS +KD S++RWD+   K+  +      LP   V + KA + +   VL LA S DG++LASGGRD+L+ VWD     + E+F                   XXXXXXXXXXXXXXXXXXXXXXXXXXXX +N +DS  KER+V+                                                       KKP  ++P AH        + IS++  + ++DLV SGS+DG +RLW+AD++ RSL  V+S
Sbjct:   63 TAQEKRLRLAKEYLGKITAQ-----EAGTDDEDDEGDGVEERVGARLQQDALEAMGKLFKKVAADYSEFEFDADSTKFLKGHRLPVTSLCLLEDGKTAFSAAKDGSLLRWDLAQQKKTKLT-----LPKDDVAAEKATTDKGRCVLALAASSDGKFLASGGRDKLVRVWDVEKGELQESFAGHRDAVSALAFRLRSHSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNGLDSLYKERVVSCGRDRSVRMWKIPEETQLVFYGNSGSMDCVKMVTDEYYVTGGDDGSLSLWFNGR-KKPVCVIPNAHD------GKWISSVAVMPRTDLVASGSSDGQIRLWQADLQGRSLTPVAS 402          
BLAST of mRNA_Ecto-sp13_S_contig11075.940.1 vs. uniprot
Match: A0A2R5GMT0_9STRA (U3 small nucleolar RNA-interacting protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMT0_9STRA)

HSP 1 Score: 140 bits (353), Expect = 5.600e-33
Identity = 155/365 (42.47%), Postives = 198/365 (54.25%), Query Frame = 1
Query:  316 ETAEEKRLRLARDVLMKLDAEQRENREEGTDEEDDDAPG-------------DYIGDRLAHARLEATGQLYREVAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRADTVVETFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINAIDSWRKERLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPAVLVPAAHGYSAVGIPR*ISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQVS 1371
            ET  EKRLR+AR++L K+ A QR   E G+DE+                   D +  +L H  L A G+L R VA  L+ + IS    +  R H+LS TC+ L+  +  A++GSKD SI+RWDVETGKRVT  P           S+K H  EVL +AVS DGRYLASGG+D++I++WD R++T+V++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    ID   +ER VT                                                       KKP+ +V  AHG S       I ++  +  +D+  SG+ DG V+LW  D   R ++  S
Sbjct:   57 ETPAEKRLRVAREILAKVQASQRRAGETGSDEDGSXXXXXXXXXTAKLNNGLDPVTQKLHHDLLRAEGRLRRPVAAALKQEDISYH--KCPRTHRLSVTCIALTGAEDVAYTGSKDCSIVRWDVETGKRVTRFPGRPATKQIAASSIKGHHDEVLAVAVSTDGRYLASGGKDKVIHIWDARSNTLVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGIDCLYRERAVTCSMDRSVRYWKFPEESQLVLQGVHKSSIDTIAMADETHFVSGSQEGTLALWSTAKKKPSSIVRRAHGDSW------ICSVAAMPNADIAASGAADGYVKLWNVDTTVRRIKAPS 413          
BLAST of mRNA_Ecto-sp13_S_contig11075.940.1 vs. uniprot
Match: A0A7L3N247_9AVES (U3IP2 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7L3N247_9AVES)

HSP 1 Score: 135 bits (341), Expect = 8.250e-32
Identity = 73/166 (43.98%), Postives = 107/166 (64.46%), Query Frame = 1
Query:  316 ETAEEKRLRLARDVLMKLDAEQRENREEGTDEEDDDAPGDYIGDRLAHARLEATGQLYREVAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWD 813
            ET +EK+LRLA+  L +L            +EE++  PGD IGDRL    LE  G+L R VAK +Q     PT++R +RGH+L  TC+V++PDD   FS SKD S+I+W+V++GKR+ ++P  +K   G       H+ +VL +A+S DG+YLA+G R++LI +WD
Sbjct:   18 ETPQEKKLRLAKQYLEEL---------RQYEEEEEARPGDLIGDRLKEDVLEQKGRLQRLVAKEVQPPD--PTSIRELRGHQLPVTCLVITPDDKVIFSASKDGSLIKWEVDSGKRLCVVPGGKK---GTEEQNMGHASQVLCMAISSDGKYLATGDRNKLIMIWD 169          
BLAST of mRNA_Ecto-sp13_S_contig11075.940.1 vs. uniprot
Match: A0A8C0VSJ7_CYACU (Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein n=2 Tax=Cyanistes caeruleus TaxID=156563 RepID=A0A8C0VSJ7_CYACU)

HSP 1 Score: 134 bits (338), Expect = 4.430e-31
Identity = 74/166 (44.58%), Postives = 107/166 (64.46%), Query Frame = 1
Query:  316 ETAEEKRLRLARDVLMKLDAEQRENREEGTDEEDDDAPGDYIGDRLAHARLEATGQLYREVAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWD 813
            ET +EK+LRLA+  L +L    R+  EE  +EE++  P D IGDRL    LE  G+L R +AK +Q     P  +R +RGH+L  TC+V+SPDD   FS SKD S+I+W+V++GKR+ ++P  +K   G       H+  VL +A+S DG+YLA+G R++LI +WD
Sbjct:   62 ETPQEKKLRLAKQYLEEL----RQLEEERAEEEEELEPADLIGDRLKEDVLEQKGRLQRLIAKDVQPPD--PARIRVLRGHQLPVTCLVISPDDRFIFSASKDGSLIKWEVDSGKRLCVVPGGKK---GTEERHMGHASHVLCMAISSDGKYLATGDRNKLIMIWD 218          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11075.940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPV1_ECTSI7.610e-17795.72Similar to U3 small nucleolar RNA interacting prot... [more]
A0A835Z4V0_9STRA6.980e-5146.48WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
W7U1Y2_9STRA1.790e-3941.32U3 small nucleolar rna-interacting protein 2 n=2 T... [more]
A0A8K1FMR6_PYTOL1.790e-3543.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6H5KZR0_9PHAE7.110e-3544.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4BXX5_PYTIN9.300e-3531.37U3 small nucleolar RNA-interacting protein, putati... [more]
D0MYR8_PHYIT5.260e-3337.25U3 small nucleolar RNA-interacting protein, putati... [more]
A0A2R5GMT0_9STRA5.600e-3342.47U3 small nucleolar RNA-interacting protein 2 n=1 T... [more]
A0A7L3N247_9AVES8.250e-3243.98U3IP2 protein (Fragment) n=3 Tax=Neognathae TaxID=... [more]
A0A8C0VSJ7_CYACU4.430e-3144.58Ribosomal RNA processing 9, U3 small nucleolar RNA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11075contigEcto-sp13_S_contig11075:113..3544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score448.7
Seed ortholog evalue2.8e-123
Seed eggNOG ortholog2880.D7FPV1
Model size1374
KEGG koko:K14793
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007154,GO:0007275,GO:0008037,GO:0008150,GO:0008152,GO:0009553,GO:0009790,GO:0009791,GO:0009793,GO:0009856,GO:0009875,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016072,GO:0022414,GO:0022613,GO:0030515,GO:0030684,GO:0031428,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044706,GO:0046483,GO:0048229,GO:0048316,GO:0048544,GO:0048608,GO:0048731,GO:0048856,GO:0051704,GO:0060321,GO:0061458,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990234,GO:1990904
Exons8
EggNOG free text desc.snoRNA binding
EggNOG OGsKOG0299@1,KOG0299@2759
Ec32 ortholog descriptionsimilar to U3 small nucleolar RNA interacting protein 2
Ec32 orthologEc-18_001780.1
Cds size1215
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11075.940.1prot_Ecto-sp13_S_contig11075.940.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11075 230..3502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462574.517939-UTR-Ecto-sp13_S_contig11075:112..2291681462574.517939-UTR-Ecto-sp13_S_contig11075:112..229Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11075 113..229 -
1681462574.6070316-UTR-Ecto-sp13_S_contig11075:3502..35441681462574.6070316-UTR-Ecto-sp13_S_contig11075:3502..3544Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11075 3503..3544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462574.5302289-CDS-Ecto-sp13_S_contig11075:229..3621681462574.5302289-CDS-Ecto-sp13_S_contig11075:229..362Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11075 230..362 -
1681462574.540073-CDS-Ecto-sp13_S_contig11075:537..6141681462574.540073-CDS-Ecto-sp13_S_contig11075:537..614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11075 538..614 -
1681462574.54897-CDS-Ecto-sp13_S_contig11075:805..9221681462574.54897-CDS-Ecto-sp13_S_contig11075:805..922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11075 806..922 -
1681462574.557573-CDS-Ecto-sp13_S_contig11075:1209..14041681462574.557573-CDS-Ecto-sp13_S_contig11075:1209..1404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11075 1210..1404 -
1681462574.5673132-CDS-Ecto-sp13_S_contig11075:1581..18211681462574.5673132-CDS-Ecto-sp13_S_contig11075:1581..1821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11075 1582..1821 -
1681462574.5771358-CDS-Ecto-sp13_S_contig11075:2141..22461681462574.5771358-CDS-Ecto-sp13_S_contig11075:2141..2246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11075 2142..2246 -
1681462574.5872178-CDS-Ecto-sp13_S_contig11075:2775..30031681462574.5872178-CDS-Ecto-sp13_S_contig11075:2775..3003Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11075 2776..3003 -
1681462574.596854-CDS-Ecto-sp13_S_contig11075:3382..35021681462574.596854-CDS-Ecto-sp13_S_contig11075:3382..3502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11075 3383..3502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11075.940.1

>prot_Ecto-sp13_S_contig11075.940.1 ID=prot_Ecto-sp13_S_contig11075.940.1|Name=mRNA_Ecto-sp13_S_contig11075.940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=405bp
MPPKRSIGAGGSRGMSSRTGSSRGRSSRQEPRTAKRPRQQAQSALAWGND
DPDDGDSDSDDGDGGGGAGAALSKERKEVEEAKEQAEAEARETAEEKRLR
LARDVLMKLDAEQRENREEGTDEEDDDAPGDYIGDRLAHARLEATGQLYR
EVAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRW
DVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRD
RLINVWDCRADTVVETFRGHQDTVSSLAFRANSLALFSGSHDRCVKHWDL
NEMGYVETMFGHQSEINAIDSWRKERLVTGGRDRTVRLWKVLEDSHLVFR
PVGGGSIDCVRMLNEDWFTTGGEDGSLALWFAMKKKPAVLVPAAHGYSAV
GIPR*
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mRNA from alignment at Ecto-sp13_S_contig11075:113..3544-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11075.940.1 ID=mRNA_Ecto-sp13_S_contig11075.940.1|Name=mRNA_Ecto-sp13_S_contig11075.940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11075:113..3544- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGCCAGAGCAGCGTCCAGCGTCTGTCCCACACACCCACGATGCCACC CAAGCGATCAATTGGCGCTGGCGGAAGCAGAGGCATGTCATCTCGAACAG GGTCTTCACGGGGCAGAAGCTCACGACAAGAGCCAAGGACCGCGAAACGT CCTAGACAACAGGTATGATTTGAATAACCGGATGGTTGCATGGCCTGTAG AGCACAGAGTTCCGTACCAGGCATCCCCGTACCTGCCTTGTACTCTGTAA CGTTCTCCCGATTGCCTTCGTGCTGGAGTTCGTGCTCGTGGACACGTCCT GTGATTGGTGAACAGGAAATGCCCCCCCGCACTTGAGAGGTCGCTTCAGC GATGCCCTGCACGTCTTCTCTTCATGATGCGTAGTCTTTGCCCACCAGTG TGCAAGTGTACTGCTGCTGCTGTACAAGGGCAATCCAGCAACCGTTCAAT CTAGTTGAAGGCAGTTTTTTCACGTGCCAGCATCCGCAAGTGACGCTTGC ATTCCTCCTTTATTACGTATGCTGAAATCCCTCGCCGTCAGGCACAATCC GCTCTAGCCTGGGGTAACGATGATCCGGATGACGGAGATTCAGACTCCGA TGACGGGGATGGGGGTGGCGGTGCTGGAGCGGCGTTGAGCAAGGAGCGTA AAGAGGTTGAGGAGGCCAAGGAACAAGCGGAGGCGGAGGCCAGAGAGACG GCGGAGGAGAAACGGCTGCGTTTGGCGAGGGATGTACTCATGAAGCTGGA CGCAGAGCAGCGAGAGAACGTGGGTAAATGTGGGGGTTGGTGATTGCGTT TTCGGTCCACCCGTAGCGCGGAACCAAGCGTTGATACCATCGAACGTTGT CATATCTCACAGCCCTCGTCACGAACCCTGCTACTGTATTTGGATAAAAA TAGAGGCAACACACGTTTTGACAGAGAGCACCAGCCTGTACCGAATTGTA GCGTTGTTGGCATTTATTGAAGATATCGGTAGAGCATACGTATGGCAACA TCTATTACGAGTCTCGTAGCACCCGTCCCTCGAGAGAGTGGCGGGTCGAG CGGGGAGGAATCGCCTTCGTCTGTGTGCTGCTCGGCCCGCCGGAGCGGGC ACGCGGGAAGCAAAAGAGTCTGGACCCTCAGAGAGACTAGACCCTCAGTT GAGCGCTAGGAACTATACATGACATGATTACCGACACGAAGGATTACGCC GACTCTGGACCGGCCAAGTCCTCCACTGGAGATGGCGATCCGGCTTTGTA CAAATTCTGATCCTTTCTGACCCTTCACACGCTTGTTGTTGTTGCCAGCG AGAAGAGGGGACTGACGAGGAGGACGACGATGCCCCTGGGGACTACATTG GAGATAGACTGGCACACGCTCGTCTCGAAGCAACCGGGCAGCTCTACAGA GAGGTGTGTGTGACTTGTAGCGGTGACCCTCAGGGAACTAAATAGGTGCT GTCATGGGATCGGTGAGGGTGTGTGTCTCTCCCTCATGCAGCTGCGGCTG CTCTGTGAAGAGTGTCGTCGTGTATTCAAACACGCCAGCCTCTGTTCCTA TCGATGGTTGACATGCGCTCCGTCTACTTTATGTGTGTCTGGATCCAGCT CCTTACGCACAGCAGCTGCGATGTAGTCTCTCGCTGCTTTAACTCAGGTT GCTAATGTCGTCTCACTAATTCGTACCCATTCTCGCGCACTGAGTACTTG CCTTCTTCCTCCACCCATTGCAGGTGGCGAAAGGCCTGCAAGGTCAGCAG ATCTCACCGACGGCTGTACGGCATATGCGCGGGCATAAGCTGAGCCCAAC ATGCGTGGTATTGTCACCGGATGACACCACGGCTTTCTCGGGCAGCAAGG ACAACTCGATAATACGGTGGGACGTTGAAACCGGCAAACGTGTCACCATG CTACCCCACTGGCGCAAGCTTCCGGGGGGCAAGGTGCCTTCAGTCAAGGC GCACAGCAAAGAGGTCAGTCTTGAAGCGGAAAGTGGTCCACCCAGCCATT CACACTCGGTTGACGTTGAGCCGAGGGTGTATCTCTGGCGGTTTTTCTTT TGCAGTTCTTCATGCACCATCTGCCCGCTTTGGAGTGGCGGGATAGCTCA CACGGTACTTCCCACGCCCACCATGTTGCCACTTGGGAAGGTTCTTACCC TTGCAGTCAGCGGCGATGGTCGGTACTTGGCTTCCGGAGGCCGAGATCGC CTCATCAACGTGTGGGATTGTCGTGCCGACACCGTTGTGGAGACATTCCG TGGCCATCAGGACACGGTGTCCTCTCTCGCGTTCCGGGCCAACAGCCTGG CGCTCTTTTCGGGGTCTCACGATCGATGCGTCAAGGTAAGTGCGCTTGGC AGCCTGCCCTTTTTTTTCTACGAAGCCAATTAGTTCTCACATGTTGACAA CCCCCGACCGCGCAATCAAGTGTCATCTGTCGGTACCGTTTGCATCGCAG CAGTTTCACACAGAAGCGCTCACCGTGCTTTCGAGAGAGGACGTCTCGCT GCCGCTGCCCTTGTCTCATGTGCGGTTTCCCCCGCCGATGTACCTCAAGA GAGAGAGTCCGTTTAATATCGCTTGGGTTAGCACCTAAGACCTCGCTACC CGAACTCTCTTCCCTTGTGCAGCATTGGGATCTCAACGAGATGGGCTACG TGGAGACTATGTTTGGTCATCAGTCAGAGATCAATGCCATTGATTCGTGG CGTAAAGAGCGGCTTGTCACCGGAGGGCGCGATCGCACGGTGAGTGGTGG GCTCAGCGCTTTCCGTTCATTTGCCGAATGTGTCCGGCACGGTGGTCGAA GGTTGCGCTGTAGTTGACAACGAGAACGGCCTGACACGCTGCTGTGCTGA GTGAGGGAGGCGCTCATGTGTAGTTACGATTTACTGGAGACAACTCCGTT GATTTTTTCCTTTTTTGTAATGCATGACAGGTCCGACTATGGAAAGTGCT GGAGGACAGCCACCTCGTGTTCCGCCCTGTTGGGGGAGGTAGCATAGACT GCGTCAGGTGAGAGATAGCTTCCCGAACGTCGACGCATCACCTCTATCCT GCCGCCAATCGCTTCGTGTAGTATGACTTGTCAATCTGGACTGTACTGAT TGTGCGGTTTTGGCTGCTGCGATTTCTGTAATGGTTCAATGCTTGCGATG GTGAGTTTCGCTCACGAACGTCATGCCTGTAGGATGCTCAACGAGGACTG GTTCACGACGGGGGGTGAAGATGGGAGTCTCGCGCTTTGGTTCGCCATGA AGAAGAAACCCGCGGTGCTGGTGCCGGCGGCGCACGGGTACAGCGCGGTG GGCATCCCGCGGTGAATTAGTGCAATCGGCTGCCTCAAGCAGTCGGACCT CGTGGTCAGCGGCTCCAACGACGGGTCGGTCCGACTGTGGCGTGCGGACG TTGAGGCGAGATCCCTGGAGCAAGTGAGTTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11075:113..3544-

>mRNA_Ecto-sp13_S_contig11075.940.1 ID=mRNA_Ecto-sp13_S_contig11075.940.1|Name=mRNA_Ecto-sp13_S_contig11075.940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1215bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11075:113..3544- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACCCAAGCGATCAATTGGCGCTGGCGGAAGCAGAGGCATGTCATC
TCGAACAGGGTCTTCACGGGGCAGAAGCTCACGACAAGAGCCAAGGACCG
CGAAACGTCCTAGACAACAGGCACAATCCGCTCTAGCCTGGGGTAACGAT
GATCCGGATGACGGAGATTCAGACTCCGATGACGGGGATGGGGGTGGCGG
TGCTGGAGCGGCGTTGAGCAAGGAGCGTAAAGAGGTTGAGGAGGCCAAGG
AACAAGCGGAGGCGGAGGCCAGAGAGACGGCGGAGGAGAAACGGCTGCGT
TTGGCGAGGGATGTACTCATGAAGCTGGACGCAGAGCAGCGAGAGAACCG
AGAAGAGGGGACTGACGAGGAGGACGACGATGCCCCTGGGGACTACATTG
GAGATAGACTGGCACACGCTCGTCTCGAAGCAACCGGGCAGCTCTACAGA
GAGGTGGCGAAAGGCCTGCAAGGTCAGCAGATCTCACCGACGGCTGTACG
GCATATGCGCGGGCATAAGCTGAGCCCAACATGCGTGGTATTGTCACCGG
ATGACACCACGGCTTTCTCGGGCAGCAAGGACAACTCGATAATACGGTGG
GACGTTGAAACCGGCAAACGTGTCACCATGCTACCCCACTGGCGCAAGCT
TCCGGGGGGCAAGGTGCCTTCAGTCAAGGCGCACAGCAAAGAGGTTCTTA
CCCTTGCAGTCAGCGGCGATGGTCGGTACTTGGCTTCCGGAGGCCGAGAT
CGCCTCATCAACGTGTGGGATTGTCGTGCCGACACCGTTGTGGAGACATT
CCGTGGCCATCAGGACACGGTGTCCTCTCTCGCGTTCCGGGCCAACAGCC
TGGCGCTCTTTTCGGGGTCTCACGATCGATGCGTCAAGCATTGGGATCTC
AACGAGATGGGCTACGTGGAGACTATGTTTGGTCATCAGTCAGAGATCAA
TGCCATTGATTCGTGGCGTAAAGAGCGGCTTGTCACCGGAGGGCGCGATC
GCACGGTCCGACTATGGAAAGTGCTGGAGGACAGCCACCTCGTGTTCCGC
CCTGTTGGGGGAGGTAGCATAGACTGCGTCAGGATGCTCAACGAGGACTG
GTTCACGACGGGGGGTGAAGATGGGAGTCTCGCGCTTTGGTTCGCCATGA
AGAAGAAACCCGCGGTGCTGGTGCCGGCGGCGCACGGGTACAGCGCGGTG
GGCATCCCGCGGTGA
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