mRNA_Ecto-sp13_S_contig11074.939.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11074.939.1
Unique NamemRNA_Ecto-sp13_S_contig11074.939.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11074.939.1 vs. uniprot
Match: D8LQP2_ECTSI (Nonribosomal peptide synthetase 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP2_ECTSI)

HSP 1 Score: 1107 bits (2863), Expect = 0.000e+0
Identity = 579/606 (95.54%), Postives = 587/606 (96.86%), Query Frame = 1
Query:    1 DGVLDLSRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNLDQVDVNESPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPDLFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHAEVRFAPYSCAHDDQYAEDGGDAVLPAGDTKDLAPTKPSPSSLLMAEEKEEHAPDVPVLTSTQKSVARLWARLLKVDKATITPSSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPSIIESPTLGELSEKLDSEMTASKKM-GEGXXXXXDRAAAILSTPALRAVGKAWASVLEAGCESSFSPKADFFDLGGHSLLLAKLATALSREAGVTVTIPQLIERPSMEGMAKIVEELSGTVPGKPSIVSGLQAAGISNSQAAAPVVLHDGSRGVVQALERVEAPTATAAAVKVVDLEAEARRLDASIYPAGTRKIG 1815
            D + D  RLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNLDQVDVNESPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPD FAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPK+GHAEVRFAPYSCAHDDQYAEDGGDAVLPAGDTKD  PTKPSPSSLLMAEEKEEHAPD PVLTSTQ+SVARLWARLLKVD+ATITPSSDFFELGGHSLLLAKLSAGLLKDMGAEVSIP+IIESPTLGELSEKLDSEMTASKKM    XXXXX  AAAILSTPALRAVGKAWASVLEAGCESSFSPKADFFDLGGHSLLLAKLATALSREAG+TVTIPQLIERPSMEGMAKIVEELSGT+PG PSIV GLQAAGISNSQ  APVVLHDGSRGVVQA+E VEAPTATAAAVKVVDLEAEARRLDASIYPAGTRKIG
Sbjct:  346 DHIYDPPRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNLDQVDVNESPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPDPFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKSGHAEVRFAPYSCAHDDQYAEDGGDAVLPAGDTKDPVPTKPSPSSLLMAEEKEEHAPDAPVLTSTQRSVARLWARLLKVDEATITPSSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPAIIESPTLGELSEKLDSEMTASKKMEXXXXXXXXXXAAAILSTPALRAVGKAWASVLEAGCESSFSPKADFFDLGGHSLLLAKLATALSREAGLTVTIPQLIERPSMEGMAKIVEELSGTIPGTPSIVPGLQAAGISNSQDIAPVVLHDGSRGVVQAVEGVEAPTATAAAVKVVDLEAEARRLDASIYPAGTRKIG 951          
BLAST of mRNA_Ecto-sp13_S_contig11074.939.1 vs. uniprot
Match: A0A6H5KFN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN6_9PHAE)

HSP 1 Score: 1063 bits (2750), Expect = 0.000e+0
Identity = 567/631 (89.86%), Postives = 575/631 (91.13%), Query Frame = 1
Query:    1 DGVLDLSRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNLDQVDVNESPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPDLFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHAEVRFAPYSCAHDDQYAEDGGDAVLPAGDTKDLAPTKPSPSSLLMAEEKEEHAPDVPVLTSTQKSVAR----------LWARLL---------------KVDKATITPSSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPSIIESPTLGELSEKLDSEMTASKKMGEGXXXXXDRAA-AILSTPALRAVGKAWASVLEAGCESSFSPKADFFDLGGHSLLLAKLATALSREAGVTVTIPQLIERPSMEGMAKIVEELSGTVPGKPSIVSGLQAAGISNSQAAAPVVLHDGSRGVVQALERVEAPTATAAAVKVVDLEAEARRLDASIYPAGTRKIG 1815
            D + D  RLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNLDQVDVNESPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPD FAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVK+RGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHAEVRF PYSCAHDDQYAED GDAVLPAGDTKD APTKPSP SLLMAEE EEHAPDVPVLTSTQ+ V            +W RL+                VD+ATITPSSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPSIIE PTLGELSEKLDSEMTASK M EGXXXXX     AILSTPALRAVGKAWASVLEAGCESSFSPKADFFDLGGHSLLLAKLA ALSREAGVTVTIPQLIE PSMEGMAKIVEELSGT+ G PSIV GLQAAGISNSQA APVVLHDGSRGVVQA+E VEAPTATAAAVKVVDLEAEA RLDASIYPAGTRKIG
Sbjct:  105 DHIYDPPRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNLDQVDVNESPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPDPFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKIRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHAEVRFVPYSCAHDDQYAEDEGDAVLPAGDTKDPAPTKPSPGSLLMAEENEEHAPDVPVLTSTQRYVDTFNCHNGGKFPMWNRLIYIERKVARIPQEMCCTVDEATITPSSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPSIIERPTLGELSEKLDSEMTASKNMEEGXXXXXXXXXXAILSTPALRAVGKAWASVLEAGCESSFSPKADFFDLGGHSLLLAKLAAALSREAGVTVTIPQLIEWPSMEGMAKIVEELSGTIAGTPSIVPGLQAAGISNSQAVAPVVLHDGSRGVVQAVEGVEAPTATAAAVKVVDLEAEASRLDASIYPAGTRKIG 735          
BLAST of mRNA_Ecto-sp13_S_contig11074.939.1 vs. uniprot
Match: A0A835ZBQ1_9STRA (Carrier domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ1_9STRA)

HSP 1 Score: 486 bits (1252), Expect = 3.540e-156
Identity = 252/452 (55.75%), Postives = 325/452 (71.90%), Query Frame = 1
Query:    1 DGVLDLSRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNLDQVDVNESPKYAPCGKVVPNVRAYILDEQLQH-------------------------VPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPDLFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHAEVRFAPYSCAHDDQYAEDGGDAVLPAGDTKDLAPTKPSPSSLLMAEEKEEHAPDVPVLTSTQKSVARLWARLLKVDKATITPSSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPSIIESPTLGELSEKLDS 1281
            D + + +RL++YLG N ITR+LFTPSLLQL+LD C  + LK  + TMRI+WLCGEVVT+ELR+K  ALLP   +ENLYSISECHDIS+ NL+ ++ +ESPKYAPCG V+PNV+A ILDEQ++                          VPVGVPGRM+I GP LA+GYLNMPE+TAERF+P+ F     R  E +YDTGDRCRYLPSGSIEVIGRCDFMVK+RGYSVVIGAVEAAI+EHPLVSTA V+TEGAEGSMDKKLVAY+VP+ WE++PSA SI+RF++++LPPYA+P V +LLDAIPINMASGK D+++LP +     R+ P +   D    ED     +P           P+ S   +   ++   P  P  ++ ++ VA +WAR+LK D ATI P SDFF+LGGHSLLL K+++G++  +G EVS+P ++++ TL  L+  L+S
Sbjct:  665 DIIYNPARLVEYLGANAITRVLFTPSLLQLILDTCSAEQLKAALATMRIIWLCGEVVTVELRDKVAALLPHIQLENLYSISECHDISYANLNALNTHESPKYAPCGTVIPNVKALILDEQMRQLLHTAEHHRAVTHXXXXXXXXXXXXVPVGVPGRMYIGGPCLALGYLNMPEKTAERFLPNPF-----RPQETIYDTGDRCRYLPSGSIEVIGRCDFMVKIRGYSVVIGAVEAAISEHPLVSTACVLTEGAEGSMDKKLVAYVVPERWERVPSAQSIQRFVRNKLPPYAIPSVFLLLDAIPINMASGKLDRRRLPSSSSNLARYMPATEIMDGIIEEDKLAKDIPV----------PTTSGAYVDSSEDAEMP-TPSASAMEQLVAEVWARVLKADAATIKPDSDFFDLGGHSLLLVKVASGIVSGVGLEVSMPDLLQNSTLSSLAALLES 1100          
BLAST of mRNA_Ecto-sp13_S_contig11074.939.1 vs. uniprot
Match: K3WR86_GLOUD (Carrier domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WR86_GLOUD)

HSP 1 Score: 375 bits (964), Expect = 8.620e-113
Identity = 196/431 (45.48%), Postives = 280/431 (64.97%), Query Frame = 1
Query:    1 DGVLDLSRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNLDQVDVNE---SPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPDLFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHAEVRFAPYSCAHDDQYAEDGGDAVLPAGDTKDLAPTKPSPSSLLMAEEKEEHAPDVPVLTSTQKSVARLWARLLKVDK-ATITPSSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPSIIESPTLGELSEKLDS 1281
            D + D  RL++Y+ ++ ITR+LFTPSLLQL+LD C    L   ++T+R+VWLCGEVVTIELR++F  L PDC ++NLYS+SECHD S  +L  +   +   S KYA CG+V+PNV AY+LD+  + V +GVPG ++I GP LAIGYLN PE+TA+RF+ D+        GER+Y TGDR R+LP+G +E+IGRCDFMVK+RGYSVV+GAVE+A+ +HPLVSTA+V+TEG EG  DK+LVAYIVPD+WEK+PS +S++ FLK RLP YA+P + + LDA+PIN ASGK D+KK+P    A+            +   +  D  +                          + P     T T+  +A +W  LL+++    +  +  FF++GGHSLL  +L + +      +V++  I+ +P L  ++ ++D+
Sbjct:  508 DTIYDPVRLVEYISQHAITRILFTPSLLQLILDTCAADVLLRSLQTLRLVWLCGEVVTIELRDRFVRLFPDCELQNLYSVSECHDASAVDLAHMSAFDNALSAKYASCGEVMPNVSAYVLDDNYKPVSIGVPGELYIGGPCLAIGYLNRPEQTAQRFLEDVVP------GERVYKTGDRARFLPNGHLELIGRCDFMVKIRGYSVVLGAVESALAQHPLVSTAVVLTEGDEGQ-DKRLVAYIVPDNWEKVPSVASLREFLKERLPHYAIPSIFVQLDALPINSASGKLDRKKMPSADQAK------------KLRSESIDLTVDV-----------------------HNRPQ----TETEVKLAAIWVELLRLENDKMLNRNVSFFDVGGHSLLATRLVSSIRDAFDVQVTLADILAAPELVAIATRIDA 892          
BLAST of mRNA_Ecto-sp13_S_contig11074.939.1 vs. uniprot
Match: A0A662Y028_9STRA (Carrier domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y028_9STRA)

HSP 1 Score: 375 bits (964), Expect = 9.200e-113
Identity = 197/433 (45.50%), Postives = 286/433 (66.05%), Query Frame = 1
Query:    1 DGVLDLSRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNLDQV---DVNESPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPDLFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHAEVRFAPYSCAHDDQYAEDGGDAVLPAGDTKDLAPTKPSPSSLLMAEEKEEHAPDVPVLTSTQKSVARLWARLLKVDKATITP-SSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPSIIESPTLGELSEKLDSEM 1287
            D + D  +L++Y+  N ITR+LFTPSLLQLVLD C  + L E +  +R+VWLCGEVVT+ELR++F  L P+C ++NLYS+SECHD S  +L ++   D + S KYA CG+V+PNV+AY+LD+  + V VGVPG ++I GP LAIGYLN PE+TA+RF+  +        GE +Y TGDR R+LP+G +E+IGRCDFMVK+RGYSVV+GAVE+A+ +HPLVST++V+TEG EG  DK+LVAYIVP+ WEK+PSAS+++ FLK +LP YA+P V + LDA+PIN ASGK D+KK+P    A+                   +++  + D K+L  T+                        T+K +A +WA LL+++  ++    + FF++GGHSLL  +L + +    G  +++  ++ SP L  ++ ++D  +
Sbjct:  503 DTIFDPIKLVEYISANVITRILFTPSLLQLVLDTCSRKLLVEKLSKLRLVWLCGEVVTLELRDRFVRLFPECELQNLYSVSECHDASAVDLARMSDFDNSLSTKYASCGEVMPNVKAYVLDDNYKAVSVGVPGELFIGGPCLAIGYLNRPEQTAQRFLKTVVP------GETVYRTGDRARFLPNGHLELIGRCDFMVKIRGYSVVLGAVESALAQHPLVSTSVVLTEGDEGE-DKRLVAYIVPEDWEKVPSASNLREFLKEKLPHYAIPSVFVQLDALPINSASGKLDRKKMPSIEAAKKLR---------------NESIDLSVDPKNLPQTE------------------------TEKKLATIWAELLRLENDSVLHREASFFDVGGHSLLSTRLVSSIRDTFGIHLTLADVLSSPELCAIASRIDESL 889          
BLAST of mRNA_Ecto-sp13_S_contig11074.939.1 vs. uniprot
Match: H3H7P1_PHYRM (Carrier domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7P1_PHYRM)

HSP 1 Score: 371 bits (952), Expect = 1.730e-112
Identity = 194/432 (44.91%), Postives = 283/432 (65.51%), Query Frame = 1
Query:    4 GVLDLSRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNL---DQVDVNESPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPDLFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHAEVRFAPYSCAHDDQYAEDGGDAVLPAGDTKDLAPTKPSPSSLLMAEEKEEHAPDVPVLTSTQKSVARLWARLLKVDKATITP-SSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPSIIESPTLGELSEKLDSEM 1287
             + D  +L++YL  N ITR+LFTPSLLQL+LD C  + L + +  +R+VWLCGEVVT+ELR++F  L P C ++NLYS+SECHD+S  +L      D + S KYA CG+V+PNV+AY+LD+  + V VGVPG ++I GP LAIGYLN PE+T++RF+  +        GE +Y TGDR R+LP+G +E+IGRCDFMVK+RGYSVV+GAVE+A+ +HPLVST++V+TEG EG  DK+LVAYIVP+ WEK+PSAS+++ FLK +LP YA+P V + LDA+PIN ASGK D+KK+P    A+                   +++  + D K+L  T+                        T+K +A +W+ LL+++  ++    + FF++GGHSLL  +L + +    G  +++  I+ SP L  ++ ++D  +
Sbjct:  496 SIYDPIKLVEYLQVNGITRILFTPSLLQLILDTCSREVLLQNLSKLRLVWLCGEVVTLELRDRFVRLFPQCELQNLYSVSECHDVSAVDLAAMSDFDNSLSTKYASCGEVMPNVKAYVLDDDNKPVSVGVPGELYIGGPCLAIGYLNRPEQTSQRFLKHVVP------GETVYRTGDRARFLPNGHLELIGRCDFMVKIRGYSVVLGAVESALAQHPLVSTSVVLTEGDEGE-DKRLVAYIVPEDWEKVPSASNLREFLKEKLPHYAIPSVFVQLDALPINSASGKLDRKKMPSIEEAKKLR---------------NESIDLSVDPKNLPQTE------------------------TEKKLASIWSDLLRLENDSVLHHEASFFDVGGHSLLSTRLVSSIRDTFGVHLTLADILSSPELCAIASRIDQSL 881          
BLAST of mRNA_Ecto-sp13_S_contig11074.939.1 vs. uniprot
Match: A0A5D6XXF7_9STRA (Carrier domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXF7_9STRA)

HSP 1 Score: 375 bits (962), Expect = 1.970e-112
Identity = 200/433 (46.19%), Postives = 286/433 (66.05%), Query Frame = 1
Query:    1 DGVLDLSRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDIS---FCNLDQVDVNESPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPDLFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHA-EVRFAPYSCAHDDQYAEDGGDAVLPAGDTKDLAPTKPSPSSLLMAEEKEEHAPDVPVLTSTQKSVARLWARLLKV--DKATITPSSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPSIIESPTLGELSEKLDS 1281
            D + D  RL+ YL ++ ITR+LFTPSLLQLVLD C   +L+  +  +R+VWLCGEVVTIELR++F  L P C ++NLYS+SECHD+S     +L   D   S KYA CG V+PNVRA++LD+    V +GVPG ++I GP LA+GYLN PE+TA+RF+  +        GER+Y TGDR R+LP+G +E+IGRCDFMVK+RGYSVV+GAVE+A+ +HPLVSTA+V+TEG EG  DK+LVAYIVPD W+++PSA+S++ FLK +LP YA+P V + LDA+PIN ASGK D+K++P    A ++R A                ++  +GD+                      AP  P    T+  +A +WA LL++  DKA ++  + FF++GGHSLL  +L + +   +  ++++  I+ +P L  ++ ++D+
Sbjct:  500 DTIYDPVRLVAYLAQHAITRVLFTPSLLQLVLDTCPGDELQRALGALRLVWLCGEVVTIELRDRFVRLFPACELQNLYSVSECHDVSAVDLAHLSAFDSALSAKYASCGAVMPNVRAFVLDDAFAPVSIGVPGELYIGGPCLALGYLNRPEQTAQRFLDHVVP------GERVYKTGDRARFLPNGHLELIGRCDFMVKIRGYSVVLGAVESALAQHPLVSTAVVLTEGDEGQ-DKRLVAYIVPDKWDQVPSAASLRAFLKEKLPHYAIPSVFVQLDALPINSASGKLDRKRMPTADQARKLRSA----------------SIDVSGDSAS--------------------APQTP----TESRLAAIWAELLRLESDKA-LSRHASFFDVGGHSLLATRLISSVRDALNVQLTLADILAAPELSAVAARIDA 884          
BLAST of mRNA_Ecto-sp13_S_contig11074.939.1 vs. uniprot
Match: G5AF40_PHYSP (Carrier domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G5AF40_PHYSP)

HSP 1 Score: 373 bits (957), Expect = 8.310e-112
Identity = 194/436 (44.50%), Postives = 286/436 (65.60%), Query Frame = 1
Query:    7 VLDLSRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNL---DQVDVNESPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPDLFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHAEVRFAPYSCAHDDQYAEDGGDAVLPAGDTKDLAPTKPSPSSLLMAEEKEEHAPDVPVLTSTQKSVARLWARLLKVDKATITP-SSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPSIIESPTLGELSEKLDSEMTASKK 1302
            + D  +L+ YL  + ITR+LFTPSLLQL+LD C  + L + +  +R+VWLCGEVVT+ELR++F  L P C ++NLYS+SECHD+S  +L      D + S KYA CG+V+PNV+AY+LD+  + V VGVPG ++I GP LAIGYLN PE+TA+RF+  +        GE +Y TGDR R+LP+G +E+IGRCDFMVK+RGYSVV+GAVE+A+ +HPLVST++V+TEG EG  DK+LVAYIVP+ WEK+PSAS+++ FLK +LP YA+P V + LDA+PIN ASGK D+KK+P    A+                   +++  + D K+L  T+                        T+K +A +W+ LL+++  ++    + FF++GGHSLL  +L + +    G ++++  I+ SP L  ++ ++D  ++ + +
Sbjct:  500 IYDPIKLVDYLHTHSITRILFTPSLLQLILDTCSKEVLLQKLSKLRLVWLCGEVVTLELRDRFVRLFPKCELQNLYSVSECHDVSAVDLAAMSDFDNSLSTKYASCGEVMPNVKAYVLDDDFKPVSVGVPGELYIGGPCLAIGYLNRPEQTAQRFLKHVVP------GETVYRTGDRARFLPNGHLELIGRCDFMVKIRGYSVVLGAVESALAQHPLVSTSVVLTEGDEGE-DKRLVAYIVPEDWEKVPSASNLREFLKEKLPHYAIPSVFVQLDALPINSASGKLDRKKMPSIEQAKKLR---------------NESIDLSVDPKNLPQTE------------------------TEKKLASIWSDLLRLENDSVLHREASFFDVGGHSLLSTRLVSSIRDTFGVQLTLADILSSPELCAIASRIDQSLSETSE 889          
BLAST of mRNA_Ecto-sp13_S_contig11074.939.1 vs. uniprot
Match: W2R2G2_PHYPN (Carrier domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2R2G2_PHYPN)

HSP 1 Score: 372 bits (955), Expect = 1.640e-111
Identity = 194/436 (44.50%), Postives = 285/436 (65.37%), Query Frame = 1
Query:    7 VLDLSRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNL---DQVDVNESPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPDLFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHAEVRFAPYSCAHDDQYAEDGGDAVLPAGDTKDLAPTKPSPSSLLMAEEKEEHAPDVPVLTSTQKSVARLWARLLKVDKATITP-SSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPSIIESPTLGELSEKLDSEMTASKK 1302
            + D ++L+ YL  + ITR+LFTPSLLQL+LD C   +L   +  +R+VWLCGEVVT+ELR++F  L P C ++NLYS+SECHD+S  +L      D + S KYA CG+V+PNV+AY+LD+  + V +GVPG ++I GP LAIGYLN PE+TA+RF+  +        GE +Y TGDR R+LP+G +E+IGRCDFMVK+RGYSVV+GAVE+A+ +HPLVST++V+TEG EG  DK+LVAYIVP+ WEK+PSAS+++ FLK +LP YA+P V + LDA+PIN ASGK D+KK+P    A+                          ++ DL+     P++L                T T+K +A +W+ LL+++  ++    + FF++GGHSLL  +L + +    G  +++  I+ SP L  ++ ++D  +  +++
Sbjct:  504 IYDPAKLIDYLATHSITRVLFTPSLLQLILDTCSNDELLLKLSKLRLVWLCGEVVTLELRDRFVRLFPKCELQNLYSVSECHDVSAVDLAAMSDFDNSLSTKYASCGEVMPNVKAYVLDDDFKPVSIGVPGELYIGGPCLAIGYLNRPEQTAQRFLKHVVP------GETVYRTGDRARFLPNGHLELIGRCDFMVKIRGYSVVLGAVESALAQHPLVSTSVVLTEGDEGE-DKRLVAYIVPEDWEKVPSASNLREFLKEKLPHYAIPSVFVQLDALPINSASGKLDRKKMPSIEEAKKL----------------------RNESIDLSV---DPANLPQ--------------TETEKKLASIWSELLRLENDSVLHREASFFDVGGHSLLSTRLVSSIRDTFGVHLTLADILSSPELCAIASRIDQSLGGTQE 893          
BLAST of mRNA_Ecto-sp13_S_contig11074.939.1 vs. uniprot
Match: A0A0P1AME5_PLAHL (L-aminoadipate-semialdehyde dehydrogenase large n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AME5_PLAHL)

HSP 1 Score: 367 bits (943), Expect = 7.890e-110
Identity = 192/431 (44.55%), Postives = 282/431 (65.43%), Query Frame = 1
Query:    7 VLDLSRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIVWLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNLDQV---DVNESPKYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERTAERFVPDLFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGYSVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSASSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHAEVRFAPYSCAHDDQYAEDGGDAVLPAGDTKDLAPTKPSPSSLLMAEEKEEHAPDVPVLTSTQKSVARLWARLLKVDKATITP-SSDFFELGGHSLLLAKLSAGLLKDMGAEVSIPSIIESPTLGELSEKLDSEM 1287
            + D  +L+++L  ++ITR+LFTPSLLQL+LD C P DL   +  +R+VWLCGEVVT+ELR++F  L P C + NLYS+SECHD+S  NL  +   D + S KYA CGKV+PNV+ +ILD   + V +GVPG +++ GP LAIGYLN PE+TA+RF+  +        GE +Y TGDR R+LP+G +E+IGRCDFMVK+RGYSVV+GAVE+A+ +HPLVST++V+TEG EG  DK+LVAYIVP+ W+KLP+AS++++FL+  LPPYAVP + + LDA+PIN ASGK D+K++P    A+            +   +  D  +   D+ +L  T                        +T+K +A +W  LL+++  ++    + FF++GGHSLL  +L + +    G  +++  I+ SP L  ++ ++D  +
Sbjct:  501 IYDPIKLVEFLAIHRITRILFTPSLLQLILDTCSPNDLLLKLSKLRLVWLCGEVVTLELRDRFVRLFPKCELYNLYSVSECHDVSAVNLTAMSDYDYSLSTKYASCGKVMPNVKVFILDNDFEPVSIGVPGELYVGGPCLAIGYLNRPEQTAQRFLKHVVL------GETVYRTGDRARFLPNGHLELIGRCDFMVKIRGYSVVLGAVESALAQHPLVSTSVVLTEGDEGE-DKRLVAYIVPEDWKKLPNASTLRKFLEGMLPPYAVPQLYVQLDALPINSASGKLDRKQMPSIEEAK------------KLRSESIDLTV---DSVNLPQT------------------------NTEKMLATIWLELLRLENDSVLHRKASFFDVGGHSLLSTRLVSCIRDTFGVHLTLADILVSPELCAIASRIDHSL 885          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11074.939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQP2_ECTSI0.000e+095.54Nonribosomal peptide synthetase 10 n=1 Tax=Ectocar... [more]
A0A6H5KFN6_9PHAE0.000e+089.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZBQ1_9STRA3.540e-15655.75Carrier domain-containing protein (Fragment) n=1 T... [more]
K3WR86_GLOUD8.620e-11345.48Carrier domain-containing protein n=1 Tax=Globispo... [more]
A0A662Y028_9STRA9.200e-11345.50Carrier domain-containing protein n=2 Tax=Nothophy... [more]
H3H7P1_PHYRM1.730e-11244.91Carrier domain-containing protein n=1 Tax=Phytopht... [more]
A0A5D6XXF7_9STRA1.970e-11246.19Carrier domain-containing protein n=1 Tax=Pythium ... [more]
G5AF40_PHYSP8.310e-11244.50Carrier domain-containing protein n=6 Tax=Phytopht... [more]
W2R2G2_PHYPN1.640e-11144.50Carrier domain-containing protein n=12 Tax=Phytoph... [more]
A0A0P1AME5_PLAHL7.890e-11044.55L-aminoadipate-semialdehyde dehydrogenase large n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11074contigEcto-sp13_S_contig11074:37..5350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score1116.3
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LQP2
Model size1818
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.phosphopantetheine binding
EggNOG OGsCOG1020@1,KOG1178@2759
Cds size1818
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11074.939.1prot_Ecto-sp13_S_contig11074.939.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11074 37..5350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462574.4071577-CDS-Ecto-sp13_S_contig11074:36..4871681462574.4071577-CDS-Ecto-sp13_S_contig11074:36..487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11074 37..487 -
1681462574.41962-CDS-Ecto-sp13_S_contig11074:818..11091681462574.41962-CDS-Ecto-sp13_S_contig11074:818..1109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11074 819..1109 -
1681462574.437548-CDS-Ecto-sp13_S_contig11074:1303..14881681462574.437548-CDS-Ecto-sp13_S_contig11074:1303..1488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11074 1304..1488 -
1681462574.4474468-CDS-Ecto-sp13_S_contig11074:2241..23941681462574.4474468-CDS-Ecto-sp13_S_contig11074:2241..2394Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11074 2242..2394 -
1681462574.457842-CDS-Ecto-sp13_S_contig11074:3195..33451681462574.457842-CDS-Ecto-sp13_S_contig11074:3195..3345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11074 3196..3345 -
1681462574.4677317-CDS-Ecto-sp13_S_contig11074:3936..41551681462574.4677317-CDS-Ecto-sp13_S_contig11074:3936..4155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11074 3937..4155 -
1681462574.4771967-CDS-Ecto-sp13_S_contig11074:4553..47371681462574.4771967-CDS-Ecto-sp13_S_contig11074:4553..4737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11074 4554..4737 -
1681462574.487004-CDS-Ecto-sp13_S_contig11074:5165..53501681462574.487004-CDS-Ecto-sp13_S_contig11074:5165..5350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11074 5166..5350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11074.939.1

>prot_Ecto-sp13_S_contig11074.939.1 ID=prot_Ecto-sp13_S_contig11074.939.1|Name=mRNA_Ecto-sp13_S_contig11074.939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=606bp
DGVLDLSRLLKYLGENKITRMLFTPSLLQLVLDQCEPQDLKECMKTMRIV
WLCGEVVTIELRNKFKALLPDCHMENLYSISECHDISFCNLDQVDVNESP
KYAPCGKVVPNVRAYILDEQLQHVPVGVPGRMWIAGPTLAIGYLNMPERT
AERFVPDLFAEAAGREGERMYDTGDRCRYLPSGSIEVIGRCDFMVKVRGY
SVVIGAVEAAITEHPLVSTAIVMTEGAEGSMDKKLVAYIVPDSWEKLPSA
SSIKRFLKSRLPPYAVPHVCILLDAIPINMASGKADKKKLPKTGHAEVRF
APYSCAHDDQYAEDGGDAVLPAGDTKDLAPTKPSPSSLLMAEEKEEHAPD
VPVLTSTQKSVARLWARLLKVDKATITPSSDFFELGGHSLLLAKLSAGLL
KDMGAEVSIPSIIESPTLGELSEKLDSEMTASKKMGEGGGGGGDRAAAIL
STPALRAVGKAWASVLEAGCESSFSPKADFFDLGGHSLLLAKLATALSRE
AGVTVTIPQLIERPSMEGMAKIVEELSGTVPGKPSIVSGLQAAGISNSQA
AAPVVLHDGSRGVVQALERVEAPTATAAAVKVVDLEAEARRLDASIYPAG
TRKIG*
back to top

mRNA from alignment at Ecto-sp13_S_contig11074:37..5350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11074.939.1 ID=mRNA_Ecto-sp13_S_contig11074.939.1|Name=mRNA_Ecto-sp13_S_contig11074.939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5314bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11074:37..5350- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGCGTCTTGGACTTGAGCAGGCTGCTCAAGTACCTCGGAGAGAACAA GATCACCCGCATGCTCTTCACTCCGTCCCTCCTACAGCTAGTGCTTGACC AATGCGAGCCCCAGGACCTCAAGGAGTGCATGAAGACCATGCGCATCGTC TGGCTGTGCGGAGAGGTTGTCACGATCGAGCTACGGTAAGGGCTGGGCGA GGCTAGGGCTCATTCGCTCTGGTCACCGTCATTGACTGGCATGTCCCTGC CAAGCACTTTACGTAGATTCTGGTTACTTGGAGTGATAGTTGCTTTCACC CGAGTTCGCCGTGCTTTTTCGGGTAGGGGGGGCGCGGGGGGGGGAGCGGT TGAGCCACACGAGGGGGGAAAGTTGGTGAATTGCTCTTCACCCCCCCCCT CCTCGTGTCTTGGCGTCTTCTTACGTTTCTCATGCGTGTCGTTGTTTCGA TGTCTTTCGGCGGGCTTGGCTTGAGTTTTTCCGGATTTAACGCTCGAGCA ACAACGAGCCCAGCGATTCTCCAGGACCTCGCCTCCAGAACGCAGACACC GCACGGCATTGTCTTCGTACTTCAATCCTCTCCCACTGCCTTCTCTTTTT TTCGTCTTTACAGGAACAAGTTCAAGGCTCTGCTCCCCGACTGCCACATG GAGAACCTCTACTCCATCAGCGAGTGCCATGACATCAGCTTCTGCAATCT CGACCAGGTTGACGTGAACGAGAGCCCCAAGTACGCTCCCTGCGGAAAGG TGGTGCCTAACGTGCGGGCCTACATCTTGGACGAACAGCTGCAGCATGTA CGTCGTTGGAATCGTTGTCGTTGTTATCGCTGCTGTTGCTGTTGTTTGTT CCTGTTGCTGTTGCTGCTGTTGTTGCTGCTATTTTCCCAACAACTCGTTT GTGTTCGGCGGTCCATGAGCATGCACCTCTCACCCATCATTTTCACACCT CCTGTAGTGACTCACGGCCCACATCACCGTCGCCCGCCCCACCGAATGCG ATTGAGGCATACCCCAAGCATACAGGCAGGTGGTGTAACAGAGTCCCCGT CGTATATGCACAGCCGTCCTCTCTCCTTTTCTCCCTTCGAACAACAGCTA CCCCTAACCCTATAACTCCCTTTCTTACCTTACGGCCCCCTCCCCGTCGT GAACGACGACCCCCTCTCATGACTCCTGGTTCATGTCGCCTGCAGGTGCC TGTTGGCGTGCCAGGACGCATGTGGATAGCGGGTCCCACGTTGGCCATCG GGTACCTCAACATGCCCGAGAGGACCGCCGAGCGCTTCGTGCCCGACCTG TTCGCCGAGGCCGCGGGAAGGGAGGGGGAACGTATGTACGACACCGGAGA CAGGTGCCGATACCTGCCCAGCGGCAGCATCGAGGTTATCGGGCGCTGTG ACTTCATGGTGAAGGTAAGGTCAGGGACGCCGCCACGCTTGTGGTTTATG GTAGTTGTTGTTGTTGTTGTTGCTGCTGCTACTGTTGCTGCTGCTCCTGC CGTCGTTGCTGGTTTTGGGTTGACATGATGGCGGTACATAGCTGTTTCTG AGTGTATGGCTGAGGTAGCGCGATATATTCATAGGTTGAAAGTTTCGCGT AGAATTGATTTTTTGGTTTTCCTGCCTGTTTTGTTCGTGGTTCGGTTTTC TGGCCTGCTCACCTCACTGGCGTTTGGTTTGTCGGCGTAGTAGCTTTGTC TTTTCCTATTTAAATGAGGATTTATTAGCTTGTTCGTAGTCGAATGCATA TGGCGACAGCTGTGATTTGAGTTGTGCCCCCATGCAACCCAAAGACCGTG TTCCGATGATTCCAGAAGAGCGGGCGAGGCGTTTCCGATGGTGTGCGTGC GTGTGTCTATTTTATCTAAGCAGCATGGCCAGTTGGTGAGTGTTCCGCCT TGCGTGTGTGAGTGTGTTTGTACCATGCTAGGCCTTGGGGCCGCATCGAT CTATTCCTTAATCCGGGCACCCTTCTTGCTCTCCTGAACGACGTTACGCG TGAAGGTACGCGGCTACTCGGTGGTTATCGGTGCCGTTGAAGCGGCCATC ACGGAGCACCCCTTGGTGTCGACGGCGATCGTCATGACGGAAGGCGCGGA AGGTAGCATGGACAAGAAGCTCGTGGCGTACATCGTGCCGGACAGCTGGG AGAAGGTGCGATAGCAGTGATCATGACGGTTGCGATGGTGGTGGGGGTGG TACACGTGCTGCCCTCCCACCTTTGGAAGAATCCCCCACTTCGAGGGTTA TTGGGTTTTATAAAATTGGTGTCGGAGTATTGATCGGAAACAAGAGGTTC GTCACACCTAAATGGATTGCTTCTTATCCGTTCCCCTCCCGCGTTCTCAC TTCCCTCCCCCCTTTCTCCCAGCACCCCAGCATTGCTGGCTTCTTCTCGC TGAAACGCCTGACCAACGTCAAATGTCGGAGTATGATCCTCTGCCCAACC CATCGCTTAGTCGGTTTGTTTTTCCGTTCTTGCGTCCACCGATCTGCTGT AGAGTGACGTTTTTTCATTTATATCTTAGTTTCATTCCTTGGAGCACTCA CCACCGTCTCTGGTCTCTCGTGTCCCCGGTGTATTTCACTCATTCACTCT TTTTCTCTTAGCTATTTGACTTGTTGACACCACTTTACGTTTTAGTTCAC TTCAACCTCACGAGAGCAACGTCTTCTTCGTCACGTTCTTGCATGAGACC GCCACCCCGTGCTACTTGACCCTCCGCACAGCGTACCCCCTCCCATGTAC CCCAGTCACGATCTCGTCTATCCTACTCTCGCACGCACTCGTGTACGCTG CTGATGTTGTCATATGCCCTTTGCATTCATGTTCCCACGTACACCCGTCG TGCGCCCGCCCCTATTTTCCCGACTCGACTGTCGCGATTTCTCTCTGGTC GTCGTCGTGGATGACGTCACTACCGCTATCGCTATCGCTCACACAAACCC GTGCAGCTCCCCAGCGCCAGTTCGATCAAGCGGTTCCTCAAGTCTCGCCT GCCACCGTACGCAGTGCCTCACGTGTGCATTCTCCTGGATGCGATCCCGA TCAACATGGCCAGCGGTAAGGCCGATAAGAAGAAACTCCCCAAGACCGGC CACGCAGAGGTAAGTGTGGTAGATGCTAGACCAGCTAGACTGTAGATTGC TTCCTATAAGTGGTGAGAATGAGAAGCGATGTTGAAGCGCCGGCGATCGG TGTTTGGCGTGCTTAGTCTGTGTTGGCTTAGTTCTCCTGCATGCATCAGG CGGGGGAAAACAGGGGAAACGCGACACATCGCACAGACGATTGGAAAAAA TGTTTGCGTTCCATTTTTTTATGGGCTTTATTCAACAGCGGTATCTCGTT TGTTGGGCTAACTTCATTTGATCACTTTGTTTTCTTGGTGGTGGGAGAAA CGCTATAATAGCGTTACGTCGCTGTCATACTTGTTTTCTTCACGGGTTGC ATGCTTGATGTCAATTTTCCGAGGGAAACTTGCACATGAAGGATGGGTGT ACCTTCAGCGAAACAGATGGATCACTCTCCCTCCCTGGCCTTCTCTCAAG CGCACAGACCCGCTTGCCTACCAAGCGCATTCTTTTTTTTTGCCCCGCTG TAAGACTGACTTTATTTCATTGGTCGACCGCTTAGCAAAGTGTAAGCTAC CTTGAAGAATCCACACATACACACAACGGTTTGCGAGCGATAGTTATTAG AGCGCACTCGTACACACACGTCATGTGCTCCTCCGCTCTTATCGTGTGTG CTCCTCTGTACTGTTGTGGGCCACTTCCATTCACTTTGGAACCCCCTCCC TCCCTCTACATCACGTGCTGGTGTTGCTCTCCCTCTCTCTTTCTCTTTCC GTGCGTGGGAAGGTGCGATTCGCGCCCTACAGCTGTGCGCATGACGACCA GTACGCGGAGGATGGAGGCGATGCGGTCTTGCCCGCTGGGGACACCAAAG ACCTGGCGCCAACCAAACCCAGCCCGAGCTCGCTGTTGATGGCGGAGGAG AAAGAGGAGCATGCGCCCGACGTGCCAGTACTCACGTCCACCCAGAAGTA AGTGGATAAGTTCAGTTGTCACAACGGCGGAAAATTCCCCCATGTGGAAC CAGCTGATATACACGGAGCAGAAGGTGGCCAGGATCCCACAACGAATGTG TTCTACGGTAGGCCAAAATGGACATGGTGTGATTTGATCTTGTGAAGCTC ATCGTTTCCATCTCTTTCTCTTGACTCCCGTCCCATCGAAGGTCGGTGGC CCGCCTGTGGGCGCGCCTCTTGAAGGTGGACAAAGCCACCATAACACCGT CCTCAGACTTCTTCGAGCTAGGGGGACACTCCCTCCTCCTCGCAAAGCTG TCGGCGGGGCTGCTCAAGGACATGGGGGCTGAAGTGTCGATCCCCTCCAT CATAGAGAGCCCCACGCTGGGGGAGCTGTCGGAGAAGCTAGACTCGGAGA TGACCGCGTCGAAAAAGATGGGAGAGGGCGGCGGCGGCGGCGGGGATCGT GCGGCGGCGATCTTATCCACGCCCGCGCTCAGGTAGGGCGGCAGTTGCTT TGTGCTTGGTGTCTTGATCTTATTATGAGGCGTGCCCGTCCGGTGGAAAC GAAGATAGACGGCCATCTCACCGGATAGAGCAGAAGACGCGCCCGGGGTA AAAGAAGCAAACGCAGGATTTAATATTGTTCCCATGGCGTCCTTGAAAAC CATGGCCTGCCTGTACTAGAATAGCAGCTACGTAGCATACGTCCCTCCTG TTCGGCAGGCGCAAAGGACACGCTTGAACGGACAAGGGATGTAGTTCCTG GTGTGCCTTGGCTTCGTCTACTCTCCTTCCAACTTTGGATGTTGTTCCGG ACTGGTGGCGCAGGGCGGTCGGCAAGGCCTGGGCAAGCGTCTTGGAGGCC GGGTGCGAGTCCTCCTTTTCCCCTAAGGCAGACTTCTTCGATCTCGGCGG CCACTCCCTCCTGCTGGCCAAGCTCGCCACCGCCCTCTCCCGCGAGGCAG GGGTGACCGTCACCATCCCGCAGCTCATCGAACGGCCTTCCATGGAGGGC ATGGCCAAGATCGTCGAGGAGCTCTCAGGAACGGTCCCGGGAAAGCCCTC CATCGTATCGGGCCTGCAGGCGGCCGGTATCTCTAATTCACAAGCTGCTG CGCCGGTGGTGCTTCACGACGGCTCTCGCGGGGTGGTGCAGGCTCTCGAG AGGGTTGAGGCGCCCACAGCTACGGCGGCCGCGGTCAAGGTGGTTGATCT TGAGGCCGAGGCTAGGAGGCTGGACGCGAGCATCTACCCCGCCGGGACGC GCAAGATCGGGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11074:37..5350-

>mRNA_Ecto-sp13_S_contig11074.939.1 ID=mRNA_Ecto-sp13_S_contig11074.939.1|Name=mRNA_Ecto-sp13_S_contig11074.939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1818bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11074:37..5350- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGCGTCTTGGACTTGAGCAGGCTGCTCAAGTACCTCGGAGAGAACAA
GATCACCCGCATGCTCTTCACTCCGTCCCTCCTACAGCTAGTGCTTGACC
AATGCGAGCCCCAGGACCTCAAGGAGTGCATGAAGACCATGCGCATCGTC
TGGCTGTGCGGAGAGGTTGTCACGATCGAGCTACGGAACAAGTTCAAGGC
TCTGCTCCCCGACTGCCACATGGAGAACCTCTACTCCATCAGCGAGTGCC
ATGACATCAGCTTCTGCAATCTCGACCAGGTTGACGTGAACGAGAGCCCC
AAGTACGCTCCCTGCGGAAAGGTGGTGCCTAACGTGCGGGCCTACATCTT
GGACGAACAGCTGCAGCATGTGCCTGTTGGCGTGCCAGGACGCATGTGGA
TAGCGGGTCCCACGTTGGCCATCGGGTACCTCAACATGCCCGAGAGGACC
GCCGAGCGCTTCGTGCCCGACCTGTTCGCCGAGGCCGCGGGAAGGGAGGG
GGAACGTATGTACGACACCGGAGACAGGTGCCGATACCTGCCCAGCGGCA
GCATCGAGGTTATCGGGCGCTGTGACTTCATGGTGAAGGTACGCGGCTAC
TCGGTGGTTATCGGTGCCGTTGAAGCGGCCATCACGGAGCACCCCTTGGT
GTCGACGGCGATCGTCATGACGGAAGGCGCGGAAGGTAGCATGGACAAGA
AGCTCGTGGCGTACATCGTGCCGGACAGCTGGGAGAAGCTCCCCAGCGCC
AGTTCGATCAAGCGGTTCCTCAAGTCTCGCCTGCCACCGTACGCAGTGCC
TCACGTGTGCATTCTCCTGGATGCGATCCCGATCAACATGGCCAGCGGTA
AGGCCGATAAGAAGAAACTCCCCAAGACCGGCCACGCAGAGGTGCGATTC
GCGCCCTACAGCTGTGCGCATGACGACCAGTACGCGGAGGATGGAGGCGA
TGCGGTCTTGCCCGCTGGGGACACCAAAGACCTGGCGCCAACCAAACCCA
GCCCGAGCTCGCTGTTGATGGCGGAGGAGAAAGAGGAGCATGCGCCCGAC
GTGCCAGTACTCACGTCCACCCAGAAGTCGGTGGCCCGCCTGTGGGCGCG
CCTCTTGAAGGTGGACAAAGCCACCATAACACCGTCCTCAGACTTCTTCG
AGCTAGGGGGACACTCCCTCCTCCTCGCAAAGCTGTCGGCGGGGCTGCTC
AAGGACATGGGGGCTGAAGTGTCGATCCCCTCCATCATAGAGAGCCCCAC
GCTGGGGGAGCTGTCGGAGAAGCTAGACTCGGAGATGACCGCGTCGAAAA
AGATGGGAGAGGGCGGCGGCGGCGGCGGGGATCGTGCGGCGGCGATCTTA
TCCACGCCCGCGCTCAGGGCGGTCGGCAAGGCCTGGGCAAGCGTCTTGGA
GGCCGGGTGCGAGTCCTCCTTTTCCCCTAAGGCAGACTTCTTCGATCTCG
GCGGCCACTCCCTCCTGCTGGCCAAGCTCGCCACCGCCCTCTCCCGCGAG
GCAGGGGTGACCGTCACCATCCCGCAGCTCATCGAACGGCCTTCCATGGA
GGGCATGGCCAAGATCGTCGAGGAGCTCTCAGGAACGGTCCCGGGAAAGC
CCTCCATCGTATCGGGCCTGCAGGCGGCCGGTATCTCTAATTCACAAGCT
GCTGCGCCGGTGGTGCTTCACGACGGCTCTCGCGGGGTGGTGCAGGCTCT
CGAGAGGGTTGAGGCGCCCACAGCTACGGCGGCCGCGGTCAAGGTGGTTG
ATCTTGAGGCCGAGGCTAGGAGGCTGGACGCGAGCATCTACCCCGCCGGG
ACGCGCAAGATCGGGTAA
back to top