mRNA_Ecto-sp13_S_contig11073.938.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11073.938.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE) HSP 1 Score: 484 bits (1246), Expect = 9.470e-160 Identity = 279/321 (86.92%), Postives = 295/321 (91.90%), Query Frame = 1
Query: 1 VPMCDGGVVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRATGRYCSITGEAPCMTSPAPTPESTLAPXXXXXXXTVPMCDGGIIGIQTSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRATGRYCSITGEAPCMTAGPAPTXXXXXXXXXXXSVEAVPMCDGGVVGIQTSDVCCSASCGSCGGYGCSGRDGGSESCCGGGVRATGRYCSITGEAPCITGAAPTPAXXXXXXXXXXXXXTVEVPKCDGGIIGIQTIDVCCSLSCGSCGGSGCTARDGGSESCCGGGVRASGRDCSVTGEAPCVVTSKPIRVKM 963
VPMCDG +VGIQ+SDVCCSASCGSCGGSGCT RDGGSESCCGGGVRA+GRYCSITGEAPCMT PAPTP+ XXXXX VPMCDG I+GIQ+SDVCCSASCGSCGGSGC+ RDGGSESCCGGGVRA+GRYCSITGEAPCMT GPAPT XXXXXXXXX+VE VPMCDG +VGIQ+SDVCCSASCG+CGG GC+GRDGGSESCCGGGVRA+GRYCSITGEAPC+TGAAPTPAXXXXXXXXX TVEVPKCDGGI+GIQ DVCCSLSCGSCGGSGCT RDGGSESCCGGGVRASGRDCSVTGEAPCVVTSKPIRVKM
Sbjct: 61 VPMCDGDIVGIQSSDVCCSASCGSCGGSGCTERDGGSESCCGGGVRASGRYCSITGEAPCMTGPAPTPDXXXX-XXXXXTVEVPMCDGDIVGIQSSDVCCSASCGSCGGSGCTERDGGSESCCGGGVRASGRYCSITGEAPCMT-GPAPTPDXXXXXXXXXTVE-VPMCDGDIVGIQSSDVCCSASCGTCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCMTGAAPTPAXXXXXXXXX----TVEVPKCDGGIVGIQASDVCCSLSCGSCGGSGCTGRDGGSESCCGGGVRASGRDCSVTGEAPCVVTSKPIRVKM 374
BLAST of mRNA_Ecto-sp13_S_contig11073.938.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI) HSP 1 Score: 459 bits (1180), Expect = 4.520e-146 Identity = 267/316 (84.49%), Postives = 287/316 (90.82%), Query Frame = 1
Query: 1 VPMCDGGVVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRATGRYCSITGEAPCMTSPAPTPESTLAPXXXXXXXTVPMCDGGIIGIQTSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRATGRYCSITGEAPCMTAGPAPTXXXXXXXXXXXSVEAVPMCDGGVVGIQTSDVCCSASCGSCGGYGCSGRDGGSESCCGGGVRATGRYCSITGEAPCITGAAPTPAXXXXXXXXXXXXXTVEVPKCDGGIIGIQTIDVCCSLSCGSCGGSGCTARDGGSESCCGGGVRASGRDCSVTGEAPCVVTSKP 948
V MCDGG+VGIQ+SDVCCSASCGSCGGSGC+ RDGGSESCCGGGVRA+GRYCS+TGEAPCMTSPAPT XXXXXXX +PMCDGGI+GIQTSDVCCSASCGSCGGSGC+GRDGGSESCCGGGVRA+GRYCSITGEAPCMT GPAPT XXXXXXXXXX+VE VPMCDGG+VGIQ+SDVCCSASCGSCGG GC+GRDGGSESCCGGGVRA+GRYCSITGEAPC+TG APTP XXXXXXXXX TVEVP CDGGI+GIQ+ DVCCS SCGSCGGSGC+ RDGGSESCCGGGVR SGR CSVTGEAPC+ + P
Sbjct: 74 VSMCDGGIVGIQSSDVCCSASCGSCGGSGCSSRDGGSESCCGGGVRASGRYCSVTGEAPCMTSPAPTXXXXXX-XXXXXXXEIPMCDGGIVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCMT-GPAPTPXXXXXXXXXXTVE-VPMCDGGIVGIQSSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXX----TVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRGSGRYCSVTGEAPCMTGAAP 382
BLAST of mRNA_Ecto-sp13_S_contig11073.938.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE) HSP 1 Score: 432 bits (1112), Expect = 8.020e-142 Identity = 245/313 (78.27%), Postives = 277/313 (88.50%), Query Frame = 1
Query: 1 VPMCDGGVVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRATGRYCSITGEAPCMTSPAPTPESTLAPXXXXXXXTVPMCDGGIIGIQTSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRATGRYCSITGEAPCMTAGPAPTXXXXXXXXXXXSVEAVPMCDGGVVGIQTSDVCCSASCGSCGGYGCSGRDGGSESCCGGGVRATGRYCSITGEAPCITGAAPTPAXXXXXXXXXXXXXTVEVPKCDGGIIGIQTIDVCCSLSCGSCGGSGCTARDGGSESCCGGGVRASGRDCSVTGEAPCVVT 939
VPMCDGG+VGIQ +VCCSASCGSCGG GC+GRDGGS++CCGGGV A+GR C++TGEAPC+T PAPTPE XXXXX VPMCDGGI+GIQ +VCCSASCGSCGG GCSGRDGGS++CCGGGV A+GR C++TGEAPC+T GPAPT XXXXXXXXX+VEA PMCDGG++GIQTSDVCCSASCGSC G GCSGRDGG ++CCGGGVRA+GR+CS+TGEAPCITG APTP XXXXXXXXX T+EVP+CDGGI+GIQ DVCCSLSCGSCGGSGC+ RDGGS++CCGGGVRASGR CSVTGEAPC+VT
Sbjct: 232 VPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSDACCGGGVTASGRLCAVTGEAPCITGPAPTPEXXXX-XXXXXTVEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSDACCGGGVTASGRLCAVTGEAPCIT-GPAPTPEXXXXXXXXXTVEA-PMCDGGIIGIQTSDVCCSASCGSCXGSGCSGRDGGPDACCGGGVRASGRFCSVTGEAPCITGPAPTPXXXXXXXXXX----TIEVPECDGGIVGIQASDVCCSLSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCLVT 537
BLAST of mRNA_Ecto-sp13_S_contig11073.938.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 433 bits (1113), Expect = 6.770e-141 Identity = 247/315 (78.41%), Postives = 270/315 (85.71%), Query Frame = 1
Query: 1 VPMCDGGVVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRATGRYCSITGEAPCMTSPAPTPESTLAPXXXXXXXTVPMCDGGIIGIQTSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRATGRYCSITGEAPCMTAGPAPTXXXXXXXXXXXSVEAVPMCDGGVVGIQTSDVCCSASCGSCGGYGCSGRDGGSESCCGGGVRATGRYCSITGEAPCITGAAPTPAXXXXXXXXXXXXXTVEVPKCDGGIIGIQTIDVCCSLSCGSCGGSGCTARDGGSESCCGGGVRASGRDCSVTGEAPCVVTSK 945
V MCDGG+VGIQTSDVCCSASCGSCGG+GC+GRDGGS +CCGGGVRA+GRYCS+TGEAPCMT VPMCDGGI+GIQ SDVCCSASCGSC G+GCSGRDGGS +CCGGGV+A+GRYCS+TGEAPCMT GPAPT XXXXXXXXXX+VE VPMCDGG+VGIQTSDVCCSASCGSCGG GCS RDGGS +CCGGGVRA+GRYCS+TGEAPC+TGAAPTP XXXXXXXXX TVEVP CDGGI+GIQT DVCCS SCGSCGG+GC+ RDGGS +CCGGGVRASGR CSVTGEAPC+ K
Sbjct: 43 VSMCDGGIVGIQTSDVCCSASCGSCGGTGCSGRDGGSGACCGGGVRASGRYCSVTGEAPCMT--------------------VPMCDGGIVGIQASDVCCSASCGSCAGTGCSGRDGGSGACCGGGVQASGRYCSVTGEAPCMT-GPAPTPXXXXXXXXXXTVE-VPMCDGGIVGIQTSDVCCSASCGSCGGTGCSSRDGGSGACCGGGVRASGRYCSVTGEAPCMTGAAPTPEXXXXXXXXX----TVEVPMCDGGIVGIQTSDVCCSTSCGSCGGTGCSGRDGGSGACCGGGVRASGRYCSVTGEAPCMTVPK 331
BLAST of mRNA_Ecto-sp13_S_contig11073.938.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI) HSP 1 Score: 310 bits (794), Expect = 1.030e-97 Identity = 167/234 (71.37%), Postives = 188/234 (80.34%), Query Frame = 1
Query: 1 VPMCDGGVVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRATGRYCSITGEAPCMTSPAPTPESTLAPXXXXXXXTVPMCDGGIIGIQTSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRATGRYCSITGEAPCMTAGPAPTXXXXXXXXXXXSVEAVPMCDGGVVGIQTSDVCCSASCGSCGGYGCSGRDGGSESCCGGGVRATGRYCSITGEAPCI-TGAAPTP 699
V CDGG+VGIQ SD+ CS+SCGSCGG+GCT RDGGSE+CCGGGVRA+GRYCS+TGEAPCMT PAPTPE XXXXX V MCDGGI+GIQ SD+CCS+SCGSCGG+GC+ RDGGSE+CCGGGVRA+GRYCS+TGEAPCMT VPMCDGG+VGIQ SDVCCS SCGSCGG GC+ RDGGSE+CCGGGVRA+GR CS+TGEAPC+ TG A TP
Sbjct: 61 VETCDGGIVGIQQSDISCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTGPAPTPEXXXX-XXXXXTDEVSMCDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMT-------------------NEVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPCVVTGPAFTP 274
BLAST of mRNA_Ecto-sp13_S_contig11073.938.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE) HSP 1 Score: 330 bits (845), Expect = 9.420e-97 Identity = 183/233 (78.54%), Postives = 211/233 (90.56%), Query Frame = 1
Query: 247 VPMCDGGIIGIQTSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRATGRYCSITGEAPCMTAGPAPTXXXXXXXXXXXSVE-AVPMCDGGVVGIQTSDVCCSASCGSCGGYGCSGRDGGSESCCGGGVRATGRYCSITGEAPCITGAAPTPAXXXXXXXXXXXXXTVEVPKCDGGIIGIQTIDVCCSLSCGSCGGSGCTARDGGSESCCGGGVRASGRDCSVTGEAPCVVTS 942
VP CDGGI+GIQ+SDVCCS SCGSCGG+GC+GRDGG+++CCGGGVR++GR+CS+TGEAPC+T GPAPT XXXXXXX E AVPMCDGG+VGIQ+SDVCC++SCGSCGG GC+GRDGG ++CCGGGVRA+GRYCS+TGEAPC+TG APTP XXXXXXXXX T EVP CDGGI+GIQ+ DVCCSLSCGSCGG+GCT RDGG+++CCGGGVRASGRDCSVTGEAPCVVTS
Sbjct: 50 VPTCDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGGADACCGGGVRSSGRFCSVTGEAPCIT-GPAPTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGGEDACCGGGVRASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXX----TEEVPMCDGGIVGIQSSDVCCSLSCGSCGGTGCTVRDGGADACCGGGVRASGRDCSVTGEAPCVVTS 277
BLAST of mRNA_Ecto-sp13_S_contig11073.938.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI) HSP 1 Score: 317 bits (811), Expect = 1.520e-96 Identity = 168/234 (71.79%), Postives = 190/234 (81.20%), Query Frame = 1
Query: 1 VPMCDGGVVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRATGRYCSITGEAPCMTSPAPTPESTLAPXXXXXXXTVPMCDGGIIGIQTSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRATGRYCSITGEAPCMTAGPAPTXXXXXXXXXXXSVEAVPMCDGGVVGIQTSDVCCSASCGSCGGYGCSGRDGGSESCCGGGVRATGRYCSITGEAPCI-TGAAPTP 699
VPMCDGG+VGIQ SD+CCS+SCGSCGG+GCT RDGGSE+CCGGGVRA+GR+CS+TGEAPCMT PAPTP XXXXX VPMCDGGI+GIQ SD+CCS+ CGSCGG+GC+ RDGGSE+CCGGGVRA+GRYCS+TGEAPCMT VPMCDGG+VGIQ SDVCCS SCGSCGG GC+ RDGGSE+CCGGGVRA+GR CS+TGEAPC+ TG A TP
Sbjct: 22 VPMCDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRFCSVTGEAPCMTGPAPTPXXXXX-XXXXXTDEVPMCDGGIVGIQQSDICCSSRCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMT-------------------NEVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPCVVTGPAFTP 235
BLAST of mRNA_Ecto-sp13_S_contig11073.938.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE) HSP 1 Score: 308 bits (788), Expect = 2.760e-95 Identity = 172/224 (76.79%), Postives = 193/224 (86.16%), Query Frame = 1
Query: 7 MCDGGVVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRATGRYCSITGEAPCMTSPAPTPESTLAPXXXXXXXTVPMCDGGIIGIQTSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRATGRYCSITGEAPCMTAGPAPTXXXXXXXXXXXSVEAVPMCDGGVVGIQTSDVCCSASCGSCGGYGCSGRDGGSESCCGGGVRATGRYCSITGEAPCI 678
MC+GG+ GIQ SDVCCS SCGSCGGSGC+GRDGGS++CCGGGVRA+GR+CSIT EAPCMT PAPTP XXXXX VPMCDG I+GIQ SDVCCSASCGSCGGSGCSGRDGGS++CCGGGVRA+GR+CS+TGEAPCMT GPAPT XXXXXXX+VE VPMCDGG+VGIQ SDVCCSASCGS C+GRDGG ++CCGGGVRA+G CS+TGEAPC+
Sbjct: 179 MCEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSITEEAPCMTGPAPTPXXXXX-XXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCMT-GPAPTTEPTXXXXXXXTVE-VPMCDGGIVGIQASDVCCSASCGSXXXXXCTGRDGGPDACCGGGVRASGLLCSVTGEAPCL 399
BLAST of mRNA_Ecto-sp13_S_contig11073.938.1 vs. uniprot
Match: A0A6H5JVK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK3_9PHAE) HSP 1 Score: 160 bits (404), Expect = 6.850e-43 Identity = 88/115 (76.52%), Postives = 96/115 (83.48%), Query Frame = 1
Query: 7 MCDGGVVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRATGRYCSITGEAPCMTSPAPTPESTLAPXXXXXXXTVPMCDGGIIGIQTSDVCCSASCGSCGGSGCSGRDG 351
MCDGG+VGIQ SDVCCSASCGSCGGSGC+GRDGGS++CCGGGVRA+GR+CS+TGEAPCMT PAPTP XXXXX VPMCDGGI+GIQ SDVCCSASCGS GRDG
Sbjct: 1 MCDGGIVGIQASDVCCSASCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCMTGPAPTPXXXXX-XXXXXTVEVPMCDGGIVGIQASDVCCSASCGSXXXXXXXGRDG 114
BLAST of mRNA_Ecto-sp13_S_contig11073.938.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 147 bits (372), Expect = 4.300e-35 Identity = 112/271 (41.33%), Postives = 142/271 (52.40%), Query Frame = 1
Query: 193 APTPESTLAPXXXXXXXTVPMCDGGIIGIQTSDV-CCSASCGSCGGSGCS------GRDGGSESCCGGGVRATGRYCSITGEAPCMTAGPAPTXXXXXXXXXXXSVEAVPMCDGGVVGIQTSDV-CCSASCGSCGGYGCS------GRDGGSESCCGGGVRATGRYCSITGEAPCITGAAPTPAXXXXXXXXXXXXXTVEVPKCDGGIIGIQTIDV-CCSLSCGSCGGSGCTARDG----GSESCCGGGVRASGRDCSVTGEAPCVVTSKP 948
APTP XXXXXX + C G+ GI + V CC +CG CGG+GC+ G DG SCCGGGV+A+ YC T EAPC+ G PT S + C G+ GI + V CC CG CGG GC+ G DG SCCGG ++A+G+YC T +APCI G++P P+ C G+ GI V CC L CG CGG+GCT G++SCCGG ++AS C T EAPC++ S+P
Sbjct: 172 APTPALXXXXXXXXXXSSARTCSNGLEGIDANGVVCCPLACGQCGGTGCNTSGAAFGLDG--SSCCGGGVKASDEYCDETNEAPCII-GSRPTP----------SPTSANTCSNGLEGIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDG--SSCCGGSIKASGKYCDETNDAPCIIGSSPAPSPTPSE-------------TCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCIIGSRP 414 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11073.938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11073.938.1 >prot_Ecto-sp13_S_contig11073.938.1 ID=prot_Ecto-sp13_S_contig11073.938.1|Name=mRNA_Ecto-sp13_S_contig11073.938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=353bp MCDGGVVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRATGRYCback to top mRNA from alignment at Ecto-sp13_S_contig11073:716..5558+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11073.938.1 ID=mRNA_Ecto-sp13_S_contig11073.938.1|Name=mRNA_Ecto-sp13_S_contig11073.938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11073:716..5558+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11073:716..5558+ >mRNA_Ecto-sp13_S_contig11073.938.1 ID=mRNA_Ecto-sp13_S_contig11073.938.1|Name=mRNA_Ecto-sp13_S_contig11073.938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1059bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11073:716..5558+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |