mRNA_Ecto-sp13_S_contig11071.936.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11071.936.1
Unique NamemRNA_Ecto-sp13_S_contig11071.936.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11071.936.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 6.340e-100
Identity = 145/159 (91.19%), Postives = 152/159 (95.60%), Query Frame = 1
Query:    1 MALAAFAALAFGMLSSVNALEVVSPSGGISVIAERAYTVEWTGTTTGRFEIDLYYCHSFCMEDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSGYKVMVKNAEDESDMGCSDDFTLVASTDAPEPGEAGYSLTVTSPSDGDTAMAGEVYTVE 477
            MA  AFAA+AFGMLS+ NALEVVSP GGISV+A+RAYTVEWTGTTTGRFEIDLYYC+SFCM+DVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSGYKVMVKNAEDESDMGCSDDFTL+AS DAPE GE GYSLTVTSPSDGDTAMAGEVYTVE
Sbjct:    1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVE 159          
BLAST of mRNA_Ecto-sp13_S_contig11071.936.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 2.670e-87
Identity = 130/159 (81.76%), Postives = 140/159 (88.05%), Query Frame = 1
Query:    1 MALAAFAALAFGMLSSVNALEVVSPSGGISVIAERAYTVEWTGTTTGRFEIDLYYCHSFCMEDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSGYKVMVKNAEDESDMGCSDDFTLVASTDAPEPGEAGYSLTVTSPSDGDTAMAGEVYTVE 477
            MA  AFAALAFGML + NALEVVSP+ GISVIA+R YTVEWTGT+  RFEIDLYYC SFCMED CGDWVTALCPYGADGCPD+ GDYDI+MPEPM+GTSSGYKV+V ++ DES MGCS DFTLVASTDAP  GE GYSLTVTSPSDGDTAMAG VYTVE
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSSGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVE 159          
BLAST of mRNA_Ecto-sp13_S_contig11071.936.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 3.800e-77
Identity = 115/159 (72.33%), Postives = 133/159 (83.65%), Query Frame = 1
Query:    1 MALAAFAALAFGMLSSVNALEVVSPSGGISVIAERAYTVEWTGTTTGRFEIDLYYCHSFCMEDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSGYKVMVKNAEDESDMGCSDDFTLVASTDAPEPGEAGYSLTVTSPSDGDTAMAGEVYTVE 477
            MA  AFAALAFGML + NALEVVSP+ G  V+A+ AYTVEWTG T+GR++IDLYYC S CMED CGDWVTALCPYG DGCPD+ GDYD++MPEPM GTSSGYKVMV ++ DESD GCS DFTL+AST+AP+  + G  ++VTSPSDGDTAMAG  YTVE
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVE 159          
BLAST of mRNA_Ecto-sp13_S_contig11071.936.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 6.330e-67
Identity = 108/161 (67.08%), Postives = 125/161 (77.64%), Query Frame = 1
Query:    1 MALAAFAALAFGMLSSVNALEVVSPSGGISVIAERAYTVEWTGTTTGRFEIDLYYCHSFCMEDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLVASTDAPEPG-EAGYSLTVTSPSDGDTAMAGEVYTVE 477
            MA   F ALA  ML + NALEVV+PS  + V+A+R YTVEWTG  +GRFEIDLY+C S CMED CGDWVTALCPYG +GCPD+ GDYDI+MPEPMSG S SGYKV V +  DE  M CSD F L+AS DAP+ G E+GY LTVTSP++GD+A AGE YTVE
Sbjct:    1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVE 161          
BLAST of mRNA_Ecto-sp13_S_contig11071.936.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 4.250e-62
Identity = 106/162 (65.43%), Postives = 123/162 (75.93%), Query Frame = 1
Query:    1 MALAAFAALAFGMLSSVNALEVVSPSGGISVIAERAYTVEWTGTTT-GRFEIDLYYCHSFCMEDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLVASTDAPEPG-EAGYSLTVTSPSDGDTAMAGEVYTVE 477
            MA   F ALA GML + NAL+V +PS G++VIA+R YTVEWTGT++  RFEIDLYYC S CMED CGDWVTALCPYG DGCPD+ GDYDI+MPEPMSGTS SGYKV V +  DE D  CSD+F L+AS++AP  G E G +L VTSP+ GD A     YTVE
Sbjct:    2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVE 163          
BLAST of mRNA_Ecto-sp13_S_contig11071.936.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 6.730e-62
Identity = 103/157 (65.61%), Postives = 121/157 (77.07%), Query Frame = 1
Query:   16 FAALAFGMLSSVNALEVVSPSGGISVIAERAYTVEWTGTTTG-RFEIDLYYCHSFCMEDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLVASTDAPEPGEAGYS-LTVTSPSDGDTAMAGEVYTVE 477
            F ALA GML   +ALEVV+P+ G  V++ RAYTVEW+GT +  RFEIDLYYC+S CMED CG+WVTALCPYG DGCPD+ GDYDI+MPEPMSGTS SGYKV V + +DE    CSD+F L+A  DAP   +AG   +TVTSPS GD+A AGE YTVE
Sbjct:    7 FVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVE 163          
BLAST of mRNA_Ecto-sp13_S_contig11071.936.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.890e-60
Identity = 93/126 (73.81%), Postives = 107/126 (84.92%), Query Frame = 1
Query:    1 MALAAFAALAFGMLSSVNALEVVSPSGGISVIAERAYTVEWTGTTTGRFEIDLYYCHSFCMEDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSGYKVMVKNAEDESDMGCSDDFTLVAS 378
            MA  AFAALAFGML +VNALEV SP+ G  ++A  + TVEWTGT++GRF+IDLYYC S CMED CGDWVTALCPYG DGCPD+ GDYD++MPEPM GTSSGYKVMV ++ DESDMGCS +FTLVAS
Sbjct:    1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSGYKVMVTDSSDESDMGCSGEFTLVAS 126          
BLAST of mRNA_Ecto-sp13_S_contig11071.936.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 2.880e-60
Identity = 103/157 (65.61%), Postives = 120/157 (76.43%), Query Frame = 1
Query:   16 FAALAFGMLSSVNALEVVSPSGGISVIAERAYTVEWTGTTT-GRFEIDLYYCHSFCMEDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLVASTDAPEPG-EAGYSLTVTSPSDGDTAMAGEVYTVE 477
            F ALA GML + NAL+V +PS G++VIA+R YTVEWTGT++  RFEIDLYYC S CMED CGDWVTALCPYG DGCPD+ GDYDI+MPEPM GTS SGYKV V +  DE D  CSD+F L+AS++AP  G E G +L VTSP+ GD A     YTVE
Sbjct:    6 FVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVE 162          
BLAST of mRNA_Ecto-sp13_S_contig11071.936.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.470e-59
Identity = 99/150 (66.00%), Postives = 117/150 (78.00%), Query Frame = 1
Query:   37 MLSSVNALEVVSPSGGISVIAERAYTVEWTGT-TTGRFEIDLYYCHSFCMEDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLVASTDAPEPGEAGYS-LTVTSPSDGDTAMAGEVYTVE 477
            ML + +ALEVV+P+ G  V+A RAYTVEWTGT +  R+EIDLYYC S CMED CGDWVTALCPYG DGCPD+ GDYDI+MPEPMSGTS SGYKV V + +D+    CSD+F L+A  +AP  G+AG   +TVTSPS GD+A AGE YTVE
Sbjct:    1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVE 150          
BLAST of mRNA_Ecto-sp13_S_contig11071.936.1 vs. uniprot
Match: A0A6H5KR87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 7.710e-52
Identity = 82/99 (82.83%), Postives = 87/99 (87.88%), Query Frame = 1
Query:  181 MEDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSGYKVMVKNAEDESDMGCSDDFTLVASTDAPEPGEAGYSLTVTSPSDGDTAMAGEVYTVE 477
            MED CGDWVTALCPYGADGCPD+ GDYDI+MPEPM GTSSGYK+MV ++ DES MGCS DFTLVASTDAP  GE GYSLTV SPSDGD AMAGEVYTVE
Sbjct:    1 MEDDCGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSGYKIMVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVNSPSDGDIAMAGEVYTVE 99          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11071.936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JY62_9PHAE6.340e-10091.19GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7G3F0_ECTSI2.670e-8781.76EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI3.800e-7772.33Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7FYL2_ECTSI6.330e-6767.08EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7FH21_ECTSI4.250e-6265.43Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JFT9_9PHAE6.730e-6265.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP11_9PHAE1.890e-6073.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRG9_9PHAE2.880e-6065.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI46_ECTSI1.470e-5966.00EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KR87_9PHAE7.710e-5282.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11071contigEcto-sp13_S_contig11071:308..5548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size492
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionSecreted protein similar to EsV-1-163
Ec32 orthologEc-26_002820.1
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462574.1425502-CDS-Ecto-sp13_S_contig11071:307..4111681462574.1425502-CDS-Ecto-sp13_S_contig11071:307..411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11071 308..411 +
1681462574.1542122-CDS-Ecto-sp13_S_contig11071:4396..44781681462574.1542122-CDS-Ecto-sp13_S_contig11071:4396..4478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11071 4397..4478 +
1681462574.163474-CDS-Ecto-sp13_S_contig11071:4922..50451681462574.163474-CDS-Ecto-sp13_S_contig11071:4922..5045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11071 4923..5045 +
1681462574.173573-CDS-Ecto-sp13_S_contig11071:5365..55481681462574.173573-CDS-Ecto-sp13_S_contig11071:5365..5548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11071 5366..5548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11071.936.1prot_Ecto-sp13_S_contig11071.936.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11071 308..5548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11071.936.1

>prot_Ecto-sp13_S_contig11071.936.1 ID=prot_Ecto-sp13_S_contig11071.936.1|Name=mRNA_Ecto-sp13_S_contig11071.936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
MALAAFAALAFGMLSSVNALEVVSPSGGISVIAERAYTVEWTGTTTGRFE
IDLYYCHSFCMEDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSS
GYKVMVKNAEDESDMGCSDDFTLVASTDAPEPGEAGYSLTVTSPSDGDTA
MAGEVYTVEVRKL*
back to top

mRNA from alignment at Ecto-sp13_S_contig11071:308..5548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11071.936.1 ID=mRNA_Ecto-sp13_S_contig11071.936.1|Name=mRNA_Ecto-sp13_S_contig11071.936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5241bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11071:308..5548+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCTTGCTGCTTTCGCTGCTCTGGCCTTCGGCATGCTCAGCTCCGT CAACGCGTTGGAGGTGGTCTCGCCCAGTGGAGGGATCTCGGTGATCGCTG AAAGGTGAGGGGCATGTAGGAGATTTACCATAAGGACTGGACAGCTAACA AACGAGAGAGAACGCGAGAGAGAGGCACGCATTTACAGAACGTAAAGAGT AGACGTCGCGTTCGTCTTGCACCCAGTCGCTGCCGACTGCAACTCGTCGG CTTTATGGAACAGCCCCTCCCGATGTAAAGTATCTCCAGATCGTTGAGAG AGATGAATCGAGAAGATAGCTTCGGTCGATGCACTGCCGTGACCGATCGG ATGGGATGCCTGCCAAAACATAAAAAATAGGGGCACGCCGCGGGCTAACT CGTGGTTGTTACTGTAGACTAGACGAATTCTGGTACGTCGCCGTTATATG TACAAGGCACGCGGAATCAACTCTTGCTGGCAGTCGGATGTCTGTATTGT TCATGAGATGCGCGGAGGAAAAAAAAAAGCCGTCTAGAACAGCATGATGC TTTTTTTCGAAAAAACAACAGCACTCAGTTGTCTATGCAAATAACTTCCG AGGGCTTCGGAGGGCCCCTACCTTCGGGAACGTGGGATGATGCGATTCAT GACGAGAGCGACTGGCATAACTGCGCATTTACCAAGAGGCACCGATCATG ACTTAACGGGGAACACGAGGTGCTCCTTTATTCATTGTGCTGTAGAAACA ACGGCGCTGAAGACACCTTGCCTCTTCCTTTCAGATCCAAGTCAGATCGA AGAATTAATTCCGTTCCTGTGCACCCCACGCCATCGTTCACTTCTCACTT GGAGTCAGGACTATACATTCATTTGCCGGACAGCCGTATCGTTCTCTGCG TACAGCAGGCGGGAAGTCACTCGGCTTCACTCCAATCTGCCCATCTGCTG TACTAGTCCGAAACGTTCAATAGTCGTTCTCTGTCAAGTGCCCCGGCTGG TGCTGCTCTCTTTTCTTATAACATTATTCCGAAACCTAACTAAGCAGCAA AGCTGTCATCGAACACCTCGTTCCCTGTGTCCCCCATGGAGGTTACATTT TGCAACACCGGATGGATTCTCCCCGATATTTTTGCGGTGACCCAGTAGAG AACTGCAGTGGATGTATTGTCGAATGTAGGTTACCAACACAGATGTTTTT TGTACTTGGCACCAGCGGACTATCATTACTGATATACATCAATAATCATT ATAGTGTTGACTTGAAAAGGCTCGAAATACGTCCGGTACCCAGCCGGTTC TTCTCCACTTACTGAAAAGACCGCCCAATATCCCGTTCTTGCTCTGGGTG CATGTCGAAGGGGTAATCTTTCTGTGCGTGTATTTATTTTTCCTGAACTC TGTTGCATCTCGCACAATTTCTTGTGATGAGTTCCTTCATGCCAGCTATG CGCGCAGCAGATGCGCAGTAGTGGCAGTAAAGCCGCTCCCTGAGATGATT TGTCGACATCCAATCGTTTGTTAGAGATGTGGTAGTAATCTACGTATTTT TGTATGGAATTAGCTCTGCACGTGTTGTCAATCTGTCTGTCAGCGGCGAA GAAAGCAGTGAGCAATGGTCTCCATGGGAACTCTTTTCGTGCCCGGGCCC CGTGAATCGCACTGACCATACACAATTCTCGTGCACGATGTTACACCCAC CACCAGCCATCATGACGAATGACCATCCGCGCGCAATCGTTGCGCTAGGT TCCGCTACTTTCTCTCTCATGCCTCGAGGCATCATACAAATATTGTCCAC TGCTGTTAAATGGCATTGACACGCCCGTACAATATGGTGCATACACAGTC CGCAGTAAATACGCGATTTGTCCCCGCGTAGGAAATCGCAAAATCTTGAC TGGTGAAACACTACATAGGTTATCATCCGCGTAACTACGTGTTTATTCAC CCCCGCATGGCAAGAATTGTTTGTAGTTGTTATTTATACCAGGTGTCAAG GGTTAATTATGTAAAAAAAACATTTGAAGGGTTGATTACGTGGGAAAATG TCCCTCCACATGAGCCTCTCCCCGAGAGAGCCACTTCGATTTCTGTTTTC TGCTTGAAGTATACGGACTAGTGTCGGTAGTTTCGCTCATGAAAATGAGT CATTGATCCCCCTACTGCTGAGGTGGTTCTATCCACAGAGCCCCTGACCT ACGCAATTTTATGGAGGGCGTCCCCCCAACAATTGCCCCCGCCCCCCCCC CGGTGGTTGCGATCGGGGTTGGGTTTGCGTCGATTGGCAACGATGGTGTA AAATAGGCCGATCACTTTGGGAGCTCGGCAACCAGGTAACCGTTTCTTTT TTTTTAACCTTTTTTGTTGTTTGCGGGAGCCATGAACGGTGGTCGAGTAG ATTGTGTTGCGCGGGGTCGAGAACCCTCACTCCGCTCAACGGGGAAAATC GCACCACGTTGTGTTAATTTGGTCAAGCACTCTCGAGGTAGTTACACAGT GCTTACAACTGTCTCTGGAAATCAAAGCACCAGAAAAAATATCAAGTCAT ACGCAGCTGTCCAGCAGGATTCAGCGCACCGTTCATGCGACTCGCCGAAT ACTTCACAGCGCCTCGTGCTTGGTGATGGGAAAGCCCGGTCCGCTGAGAA CCCGGTTTGCTCCGTCCCGGCTCTGTAGGGATGCGAGGTAAATGGTCTAA GGTCTACGGCATGCACGACAACGAGAGCACCTCCCCCCCCCTCCTCGGTG TTTGCCATCGGGGTTGGGTTTTCGTCGCGTCGCAACGACGTTGTAAAACA AGCCGATACCTTCGTGAGGTCAGCAACAACAGGTTACCTTTTTTTTGCGG GAACCCTGTGGTCGAGTTGATCATGTTGCGCGGGGTCGAGAACTCTGACT CCGCGGAAAGGAGATAATCACACCACGTTGTGTTATGTTGGTCAAGCACC TTAGAGACAGCTACAGTATGCTGAAATCTGTCTCTGGAAGTGAAAAGCAC CAGAAAATATATCGAGTCATACGCAGCTGTCATCCGTACGCAAGAAAGTA AACACAAGATGCAAATACCCTTCGCAGGATGCAGCGCACCCTTCATGCGA CTCGCCGAATACCTCACGGTGCTTCGCGCTTGATGATGCGAGAGCCTGGT CCGGCGAGAACCCGGCGTGCCCCGTCCTGGCTTTGTAGGGATGCGAGGCC AGTTGTCAAACGACTACGGCAAGCACGGCTATGACTACACCTGCCATCCC TGCACGGACCCCGAATTTTGATTACGTAGTGTTGTAGGCCTTGTTTCTTG AATGTTATGTCTCGTAGACCGTTGCTGGTATCCACGAGTATGTTTGTTTT GATTTTATTCATTCATTTACGTCTTTTCTGGAAGACAAGTCCAATCCTCC CAGTTGACCCCATCTATCTGTGATTATGTTATGCGCTGTGAATCATGACT CTTGTGGTATTGTTTCGCACGCACGCTGTGTTTGAATGTTTTCTTTCTCT CACAAACACACACGCGGAATGAATCCTTCATGTAATAATTCGAAGAGCAT ACGATAAAGTTCGGTGTCAATCTTTTGAATCCTTGACTTTTTTTTCGGGG GCGTGTCGTTGACGTTGCGAAGAAAACGAGGCCGGGTGCCGGGTGTCCGC GTGACGAAAGGCCAGAGTTAACACCTTGATCCAACGAGGCGTCCGAGTTC CTCCGCTTGCACATGAGCGCAAGTAATCACAGTCAACAAACCTTCATGCT ACCCCTATCAATACTTATGCCGGCTGGAAATTTTCAGAGACAGACGTACC ATGATGCATGCCCCACTATTTTTTCTCCTGGACATCTCCCCGGAATGAAC AGGATTCACCGAACGGTACGTAGGGATGATGCAGGCATCATGGAATTCGC CTTCTGATTCACGCCCCCTCCATCCGTCCCCGTCGTCATTTTTTCTCAAA CCATATCCTACTTGCCTACCTCGTGCCACACAAGGTATGGGCGAACGTAT GTGTACATGCAAGCATGGTCCGTGATGATGCGCTTCACTGTTTTCGTCCA CCGCTTTTTCCCTTCGTCTCTCGGTGCGTCCAATACCAGGGCATACACCG TGGAGTGGACCGGAACCACCACCGGACGATTCGAGATCGATCTCTACTAC TGCCACTCCTTCTGTATGGAGGTAAGAGCACATCTTCGCGTTTTTCTCAA AAAGTGTGTTGTTCTTCATGAAATATCCCTGAAACGTACTTCGGGAGTGC GTGGTGGTTGTAAAACCGGACCTTCCGTTCCAAGTAGATCTCGGCACTTG CGCGCCTCGATTGTTGACGATTTAAGATCATGACGTACTTGCACACTTCA AATTGGTCTGCCCGCCAAAATGTTGAAACAAGATACGCTCGTTCTCTCTC ACGAGTATTTCGCAAGAAGTTTCGTTTTTTTCCGAAACACCGTGTCAACC CCTGCTCGAATCCGTTTCGTTCCGTATCCCCGATTTCGCAATTATGTTTT TTTCCAAAACACCGTGTCAACCCCTGCTTGGATCCATTTCGTTCCGTGTC CCCGACACCCTCATGAGCACAACAACCTCCCTCCACTAACGCAAGCACTT CTTCTGTGTTTGCAGGATGTGTGCGGGGACTGGGTTACTGCCCTTTGCCC GTACGGCGCGGATGGTTGCCCCGACAGTGCGGGTGACTACGATATCATCA TGCCCGAGCCTATGAGTGGTACCTCAAGCGGCTACAAGGTGTGTAAATGC GTGTGTGCTATGGTAGGTGGAACGGACGAAAACGAGTAGATTTAGAACGA TTTCGATTGCAATGCATGAACACGAGCTGAAAGCCGTGCTAACTGAGAGC GCATTCATCATCTAGCTAGAAGAGCACGAGAAGTTTGTCCGAGATCTCGA TGGTACAACTTCCCCAGAGCTGTTCATGCTTTGTCCACAAGGACTCCCAT GTGTCACACATGTAAAATTGGGCAAGCTTTGTACACCGTTCTACTCGAAG CAGGATATCCCCAAGTGTCATGGAATGACGTGCTGGTCTCCCTCGCTGTA ATCTCTAGGTGATGGTGAAGAATGCCGAGGACGAGTCCGACATGGGCTGC TCCGACGACTTCACCCTGGTCGCGTCCACGGATGCACCCGAGCCTGGCGA AGCGGGATACAGTCTCACCGTCACTTCTCCCTCGGACGGCGACACCGCGA TGGCCGGCGAAGTGTACACCGTTGAGGTGAGGAAGTTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11071:308..5548+

>mRNA_Ecto-sp13_S_contig11071.936.1 ID=mRNA_Ecto-sp13_S_contig11071.936.1|Name=mRNA_Ecto-sp13_S_contig11071.936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11071:308..5548+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCTTGCTGCTTTCGCTGCTCTGGCCTTCGGCATGCTCAGCTCCGT
CAACGCGTTGGAGGTGGTCTCGCCCAGTGGAGGGATCTCGGTGATCGCTG
AAAGGGCATACACCGTGGAGTGGACCGGAACCACCACCGGACGATTCGAG
ATCGATCTCTACTACTGCCACTCCTTCTGTATGGAGGATGTGTGCGGGGA
CTGGGTTACTGCCCTTTGCCCGTACGGCGCGGATGGTTGCCCCGACAGTG
CGGGTGACTACGATATCATCATGCCCGAGCCTATGAGTGGTACCTCAAGC
GGCTACAAGGTGATGGTGAAGAATGCCGAGGACGAGTCCGACATGGGCTG
CTCCGACGACTTCACCCTGGTCGCGTCCACGGATGCACCCGAGCCTGGCG
AAGCGGGATACAGTCTCACCGTCACTTCTCCCTCGGACGGCGACACCGCG
ATGGCCGGCGAAGTGTACACCGTTGAGGTGAGGAAGTTGTGA
back to top