mRNA_Ecto-sp13_S_contig11067.933.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11067.933.1
Unique NamemRNA_Ecto-sp13_S_contig11067.933.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11067.933.1 vs. uniprot
Match: A0A6H5K6Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.800e-9
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = -3 
Query:  508 GGGVLILTAVHALVVRPLTPRPYNAGTGHAGFSPDQTFTSPGAKRR 645
            GGGVLI+  VHA+VVRPLT  PY AGT HAGFS DQ  TSP AKRR
Sbjct:  183 GGGVLIV--VHAVVVRPLTSHPYEAGTEHAGFSADQALTSPSAKRR 226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11067.933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K6Y7_9PHAE1.800e-973.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11067contigEcto-sp13_S_contig11067:310..1067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size758
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462573.967478-UTR-Ecto-sp13_S_contig11067:309..3321681462573.967478-UTR-Ecto-sp13_S_contig11067:309..332Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11067 310..332 +
1681462573.987999-UTR-Ecto-sp13_S_contig11067:800..10671681462573.987999-UTR-Ecto-sp13_S_contig11067:800..1067Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11067 801..1067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462573.978212-CDS-Ecto-sp13_S_contig11067:332..8001681462573.978212-CDS-Ecto-sp13_S_contig11067:332..800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11067 333..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11067.933.1prot_Ecto-sp13_S_contig11067.933.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11067 333..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11067.933.1

>prot_Ecto-sp13_S_contig11067.933.1 ID=prot_Ecto-sp13_S_contig11067.933.1|Name=mRNA_Ecto-sp13_S_contig11067.933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
MPPSSCPKQGQGSALTLAFVCGGAVLPLPASIRGTLQQLLDTMHAHSPTK
QKGKDLHPIHFGRMQHRSHVFQRQTTDVSPAKKEEEKVQKFPNKTSKIRF
RPRFSAPCLSGNLANDKTKFQSAVGEAGGFRSVCLALQARPISPKSTAIQ
TDAAK*
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mRNA from alignment at Ecto-sp13_S_contig11067:310..1067+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11067.933.1 ID=mRNA_Ecto-sp13_S_contig11067.933.1|Name=mRNA_Ecto-sp13_S_contig11067.933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=758bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11067:310..1067+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCCCCTGTCCTCTCCGGAAAAATGCCACCTTCCTCGTGCCCAAAGCAA
GGTCAAGGCTCGGCGTTAACTCTCGCCTTCGTTTGTGGTGGTGCAGTGCT
TCCGTTGCCCGCAAGCATACGTGGTACTCTGCAACAGCTCTTGGACACGA
TGCACGCACACTCTCCGACAAAACAAAAAGGCAAGGACCTACATCCAATA
CACTTCGGACGGATGCAACACCGAAGCCATGTGTTTCAGAGGCAAACAAC
GGACGTTAGCCCCGCCAAAAAAGAAGAAGAAAAAGTGCAGAAGTTCCCCA
ACAAAACAAGTAAAATTCGTTTTCGCCCACGTTTCTCTGCGCCCTGCCTG
TCGGGGAACCTTGCCAACGATAAAACAAAATTCCAATCTGCGGTAGGTGA
GGCTGGGGGCTTTCGTTCGGTCTGCCTGGCACTCCAAGCGAGACCGATTT
CACCCAAATCAACCGCAATCCAAACAGATGCGGCGAAATAACAAGCCCCC
CCTAACAACGGCGCTTCGCGCCCGGTGATGTGAAAGTCTGGTCCGGTGAG
AACCCGGCGTGCCCCGTCCCGGCATTGTAGGGGCGCGGGGTCAGTGGTCT
AACGACAAGGGCATGCACGGCTGTGAGTATGAGTACACCCCCCCCAAAAA
CAAGAAGAGCGGCAGCAAGAACTCTTGGCAAACTCTCGGCAAAAGAACAA
AATCATATTCATGTCCATGTTGTATTCGGGTTGGCGATTTCGAAAGCCAA
CTCCCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11067:310..1067+

>mRNA_Ecto-sp13_S_contig11067.933.1 ID=mRNA_Ecto-sp13_S_contig11067.933.1|Name=mRNA_Ecto-sp13_S_contig11067.933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11067:310..1067+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACCTTCCTCGTGCCCAAAGCAAGGTCAAGGCTCGGCGTTAACTCT
CGCCTTCGTTTGTGGTGGTGCAGTGCTTCCGTTGCCCGCAAGCATACGTG
GTACTCTGCAACAGCTCTTGGACACGATGCACGCACACTCTCCGACAAAA
CAAAAAGGCAAGGACCTACATCCAATACACTTCGGACGGATGCAACACCG
AAGCCATGTGTTTCAGAGGCAAACAACGGACGTTAGCCCCGCCAAAAAAG
AAGAAGAAAAAGTGCAGAAGTTCCCCAACAAAACAAGTAAAATTCGTTTT
CGCCCACGTTTCTCTGCGCCCTGCCTGTCGGGGAACCTTGCCAACGATAA
AACAAAATTCCAATCTGCGGTAGGTGAGGCTGGGGGCTTTCGTTCGGTCT
GCCTGGCACTCCAAGCGAGACCGATTTCACCCAAATCAACCGCAATCCAA
ACAGATGCGGCGAAATAA
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