mRNA_Ecto-sp13_S_contig11057.927.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11057.927.1
Unique NamemRNA_Ecto-sp13_S_contig11057.927.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11057.927.1 vs. uniprot
Match: D7G6K5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K5_ECTSI)

HSP 1 Score: 1224 bits (3168), Expect = 0.000e+0
Identity = 642/718 (89.42%), Postives = 660/718 (91.92%), Query Frame = 1
Query:   31 QPATGGAWGEPVGHWEPVEDXXXGQRWVPGVEQGPGAGADAGQPNQAPVQELERAPLHGTGQGTVEEERDEPVPVPEENGRLSAENEFRLANAYAEAYPRELARGRAVIYGEENPHFTVQRARAQQSDQLPPLLALSYFRQPRPASTSETEAAWLARAAEDWLATNQGEVNAVRRRDEAARSSLVEAFYSGDDLLRHIAAEYARSALRVAAPFTSVAATDRPRAFWSRLEQYQQQQADGEQTREPLFKWLGIVEPPPPTGDQSTWEEDDDGAVADEDAWEMPFADAEIEEETFEVLPPPRTLFTPWPSTRTGRVDLRPTPPSSRARRRALDPASRLLSATSTFGTLNLRAEVELWVAGSNIRQHGLRRLMAVQERELSKAWVALWGRRRRLDPDSKTWVDADDSGDAAVRAAARRVVFLEAHPEQACQEQGAMMKAFVRRNGTEVSRAVEEADAELAAAWERMHDNREDVDAPYSSITPPASTCPSTFDRAYAAYRKHIDTRASAALVTNSLLPTSAASATLQLRMMCRMADAWESANHRRVCAQRFADHFSGAAGAERVEQEGETLPKRLRESRAAANEDAAAFGAVVALVVAPMLIGRASQMCKCDMGAILSNAVDWVAFNGEAFEDELQRMETRLRLPPGTMAGKDIEDEGCSGGGMGRMLDGCECELESSVSSCRRLVACPIITRRILRVPEPVCPECEDGSGVFGTDLFDLFA 2184
            QPAT GAWGEPV        XXX QRWVPGVEQGPGA ADA QPNQ P QELERAPLHGTGQ T+EEERDEPVPVPEENGRLSAE+EFRLANAYAEAYPRELARGRAVIYGEENPHFTVQRA AQ S QLPPLLALSYF QP PASTSETEAAWL RAAEDW  TNQGEVNAVRRRDEAARSSLVEAFYSGDDLLRHIAAEYARSALRVA PFTSVAATDRPRAFWSRLEQY QQQA+GEQ  EPLFKWLGIVEPPPPTGDQSTWEE DDGAVADEDAWE+PFADAEIE ETFEVLPPPR LFTPWPS RTGRVDLRPTPPSSR RR ALDPASRL+ ATSTFGTLNLRAEVELWVAG+NIRQ GLRRLMAVQERELSKAWVALW  RRRLDP SKTWVDADD GDAAVRAAARRVVFLEAHPEQACQEQGAMMKAFVRRNG EV +AVEEADAELAAAWERMHDN +DVDA +SS TPPAST PSTFDRAYAAYRKHIDTRASAALV NSL PTS ASATLQLR + RMADAWESANHRRVCAQRFADHFSGAAGAE+  QE E LPKRLRESRAAANEDAAAFGAVVALVVAPMLIGRASQMC+CDMGAILSNAVDWVAFNGEAFE+ELQRME RLRL PGTMAGK+++DEGCSGGGMGR+LDGCEC LESSVSSC RLVACPI+TRRILRVPEPVCPECEDGSGVFGTDLFDLFA
Sbjct:  472 QPATSGAWGEPVXXXXXXXXXXXXQRWVPGVEQGPGA-ADAWQPNQRPAQELERAPLHGTGQATIEEERDEPVPVPEENGRLSAEDEFRLANAYAEAYPRELARGRAVIYGEENPHFTVQRACAQ-SSQLPPLLALSYFHQPCPASTSETEAAWLMRAAEDWRTTNQGEVNAVRRRDEAARSSLVEAFYSGDDLLRHIAAEYARSALRVAPPFTSVAATDRPRAFWSRLEQYLQQQANGEQNGEPLFKWLGIVEPPPPTGDQSTWEEGDDGAVADEDAWEVPFADAEIEVETFEVLPPPRRLFTPWPSARTGRVDLRPTPPSSRGRRHALDPASRLVLATSTFGTLNLRAEVELWVAGTNIRQEGLRRLMAVQERELSKAWVALWSHRRRLDPVSKTWVDADDPGDAAVRAAARRVVFLEAHPEQACQEQGAMMKAFVRRNGAEVLKAVEEADAELAAAWERMHDNHDDVDASHSSTTPPASTSPSTFDRAYAAYRKHIDTRASAALVANSLPPTSVASATLQLRRIGRMADAWESANHRRVCAQRFADHFSGAAGAEKAAQEREALPKRLRESRAAANEDAAAFGAVVALVVAPMLIGRASQMCECDMGAILSNAVDWVAFNGEAFEEELQRMEARLRLSPGTMAGKNVKDEGCSGGGMGRILDGCECNLESSVSSCSRLVACPIVTRRILRVPEPVCPECEDGSGVFGTDLFDLFA 1187          
BLAST of mRNA_Ecto-sp13_S_contig11057.927.1 vs. uniprot
Match: A0A6H5JAV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAV0_9PHAE)

HSP 1 Score: 1169 bits (3025), Expect = 0.000e+0
Identity = 611/690 (88.55%), Postives = 635/690 (92.03%), Query Frame = 1
Query:  118 GVEQGPGAGADAGQPNQAPVQELERAPLHGTGQGTVEEERDEPVPVPEENGRLSAENEFRLANAYAEAYPRELARGRAVIYGEENPHFTVQRARAQQSDQLPPLLALSYFRQPRPA-STSETEAAWLARAAEDWLATNQGEVNAVRRRDEAARSSLVEAFYSGDDLLRHIAAEYARSALRVAAPFTSVAATDRPRAFWSRLEQYQQQQADGEQTREPLFKWLGIVEPPPPTGDQSTWEEDDDGAVADEDAWEMPFADAEIEEETFEVLPPPRTLFTPWPSTRTGRVDLRPTPPSSRARRRALDPASRLLSATSTFGTLNLRAEVELWVAGSNIRQHGLRRLMAVQERELSKAWVALWGRRRRLDPDSKTWVDADDSGDAAVRAAARRVVFLEAHPEQACQEQGAMMKAFVRRNGTEVSRAVEEADAELAAAWERMHDNREDVDAPYSSITPPASTCPSTFDRAYAAYRKHIDTRASAALVTNSLLPTSAASATLQLRMMCRMADAWESANHRRVCAQRFADHFSGAAGAERVEQEGETLPKRLRESRAAANEDAAAFGAVVALVVAPMLIGRASQMCKCDMGAILSNAVDWVAFNGEAFEDELQRMETRLRLPPGTMAGKDIEDEGCSGGGMGRMLDGCECELESSVSSCRRLVACPIITRRILRVPEPVCPECEDGSGVFGTDLFDLFA 2184
            GVE GPGAGADAGQPNQ  VQELERAP H TGQGTVEEERDEPVPVP ENGRLSAE+EFRLANAYAEAY RELARGRA IYGEENPHFTVQRARAQ SDQLPPL ALSYFRQPRPA  TSETEAAWL RAAEDWL TNQG+VN VRRRDEAARSSLVEAFYSGDDLLRHIAAEYARSALRVAAPFTSVAATDRPRAFWSRLEQYQQQQADGEQ  EPLFKWLGIVEPPPPTGDQSTW++DDDGAVADEDAWE PFA+AEIEEETFE+LPPP+TLFT WPS RT RVDLRPTPPSS  RRRALDPASRL+SATSTFGTL LRAEVELWVAGSNIRQ GLRRLMAVQERELSKAWVALWG RRRLDP SKTWVDADDSGDAAVRAAARRVVFLEAHPEQACQEQGAMMKAF+RRNG  V +AVEEADAELAAAWERMHDNR+DVDA +SS TPPAST P+ FDRAY AYRKHIDTRASAALV NSL PT AASATLQLR + RM DAWESANHRRVCAQRFADHFSGAAGAE+  QE E LPKR RESRAAANEDA AFG VVALVVAPMLIGRASQMC+CDM AILSNAVDWVAFNGEAFE+ELQRME RL+LPPGTMAGKD ++EGCS GGMGR+LD CEC+LE SVSSC RLVACPI+TRRILRVP+PVCPECEDGSGVFGTDLFDLFA
Sbjct:  255 GVEHGPGAGADAGQPNQEAVQELERAPRHRTGQGTVEEERDEPVPVPGENGRLSAEDEFRLANAYAEAYRRELARGRAAIYGEENPHFTVQRARAQ-SDQLPPLSALSYFRQPRPAICTSETEAAWLTRAAEDWLTTNQGKVNVVRRRDEAARSSLVEAFYSGDDLLRHIAAEYARSALRVAAPFTSVAATDRPRAFWSRLEQYQQQQADGEQNGEPLFKWLGIVEPPPPTGDQSTWKDDDDGAVADEDAWEAPFANAEIEEETFEILPPPQTLFTAWPSARTERVDLRPTPPSSWGRRRALDPASRLVSATSTFGTLRLRAEVELWVAGSNIRQKGLRRLMAVQERELSKAWVALWGHRRRLDPVSKTWVDADDSGDAAVRAAARRVVFLEAHPEQACQEQGAMMKAFIRRNGAVVLKAVEEADAELAAAWERMHDNRDDVDAAHSSTTPPASTSPAAFDRAYTAYRKHIDTRASAALVANSLPPTCAASATLQLRRIGRMVDAWESANHRRVCAQRFADHFSGAAGAEKAAQEREALPKRPRESRAAANEDATAFGDVVALVVAPMLIGRASQMCECDMEAILSNAVDWVAFNGEAFEEELQRMEARLKLPPGTMAGKDGKNEGCSEGGMGRILDRCECKLERSVSSCSRLVACPIVTRRILRVPKPVCPECEDGSGVFGTDLFDLFA 943          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11057.927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6K5_ECTSI0.000e+089.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JAV0_9PHAE0.000e+088.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11057contigEcto-sp13_S_contig11057:3..3794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score1243.8
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7G6K5
Model size2187
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2EGD3@1,2SAJF@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_006520.1
Cds size2187
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462573.4162197-CDS-Ecto-sp13_S_contig11057:2..4071681462573.4162197-CDS-Ecto-sp13_S_contig11057:2..407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11057 3..407 +
1681462573.4283948-CDS-Ecto-sp13_S_contig11057:1027..11531681462573.4283948-CDS-Ecto-sp13_S_contig11057:1027..1153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11057 1028..1153 +
1681462573.4391685-CDS-Ecto-sp13_S_contig11057:1525..21341681462573.4391685-CDS-Ecto-sp13_S_contig11057:1525..2134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11057 1526..2134 +
1681462573.458446-CDS-Ecto-sp13_S_contig11057:2398..25631681462573.458446-CDS-Ecto-sp13_S_contig11057:2398..2563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11057 2399..2563 +
1681462573.4694211-CDS-Ecto-sp13_S_contig11057:2912..37941681462573.4694211-CDS-Ecto-sp13_S_contig11057:2912..3794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11057 2913..3794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11057.927.1prot_Ecto-sp13_S_contig11057.927.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11057 3..3794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11057.927.1

>prot_Ecto-sp13_S_contig11057.927.1 ID=prot_Ecto-sp13_S_contig11057.927.1|Name=mRNA_Ecto-sp13_S_contig11057.927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=729bp
SEQGEDGADGQPATGGAWGEPVGHWEPVEDGAWGQRWVPGVEQGPGAGAD
AGQPNQAPVQELERAPLHGTGQGTVEEERDEPVPVPEENGRLSAENEFRL
ANAYAEAYPRELARGRAVIYGEENPHFTVQRARAQQSDQLPPLLALSYFR
QPRPASTSETEAAWLARAAEDWLATNQGEVNAVRRRDEAARSSLVEAFYS
GDDLLRHIAAEYARSALRVAAPFTSVAATDRPRAFWSRLEQYQQQQADGE
QTREPLFKWLGIVEPPPPTGDQSTWEEDDDGAVADEDAWEMPFADAEIEE
ETFEVLPPPRTLFTPWPSTRTGRVDLRPTPPSSRARRRALDPASRLLSAT
STFGTLNLRAEVELWVAGSNIRQHGLRRLMAVQERELSKAWVALWGRRRR
LDPDSKTWVDADDSGDAAVRAAARRVVFLEAHPEQACQEQGAMMKAFVRR
NGTEVSRAVEEADAELAAAWERMHDNREDVDAPYSSITPPASTCPSTFDR
AYAAYRKHIDTRASAALVTNSLLPTSAASATLQLRMMCRMADAWESANHR
RVCAQRFADHFSGAAGAERVEQEGETLPKRLRESRAAANEDAAAFGAVVA
LVVAPMLIGRASQMCKCDMGAILSNAVDWVAFNGEAFEDELQRMETRLRL
PPGTMAGKDIEDEGCSGGGMGRMLDGCECELESSVSSCRRLVACPIITRR
ILRVPEPVCPECEDGSGVFGTDLFDLFA*
back to top

mRNA from alignment at Ecto-sp13_S_contig11057:3..3794+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11057.927.1 ID=mRNA_Ecto-sp13_S_contig11057.927.1|Name=mRNA_Ecto-sp13_S_contig11057.927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11057:3..3794+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGAACAAGGGGAAGACGGAGCGGATGGACAACCTGCTACAGGCGGGGC ATGGGGAGAACCGGTTGGACATTGGGAGCCTGTTGAGGACGGCGCGTGGG GACAACGATGGGTGCCGGGGGTTGAACAAGGACCGGGAGCGGGGGCTGAT GCCGGGCAACCAAATCAGGCACCGGTCCAGGAACTGGAACGAGCACCGCT CCATGGGACGGGTCAGGGAACCGTTGAGGAGGAACGGGATGAGCCGGTCC CGGTCCCGGAAGAAAACGGGCGTCTCTCAGCGGAGAATGAGTTCCGGCTG GCAAACGCTTACGCGGAGGCATACCCTCGAGAGCTTGCCCGGGGGCGTGC GGTTATTTACGGGGAGGAGAACCCACACTTTACAGTGCAGCGGGCTCGTG CTCAGGTGAGAATTTTGATTTTTCGCTCGGATCCACATCGACGAAATGCG TTCCCTTCTTTATATAGCACCGCACACGTCGGATGGTACCATTCGCACGG CCACCAGAAAAGGTCAAGGAGTAAAAGCTTGCATCCCCCGCAAAAGGTGT AAAGCGTTTCCCGGCAACGTCGACAGGAACGTTTACACAGAAAATTTTGG ATTCCTGGAACGTTGGTCCAACGCGTAGGACGCTTCCTGATTGGTAATAC TTTATTTACGCCTTTACCGGCATGGAGCAGAGAAATGCTGTCGTTGGCGA TATTTTCGGGTAAAGTGAAGGAAAAATAGAGAATAAGGTAGATGCCAATG TACTCCAACAAAGTATTGCAGCAATAATAACAATTCCCAGGCGGAGAATA ACGTCGTGACTATAAGCCGCCGTAAGATCTCCGGTTTCACGCTCGTCTGC ACCTCTGAATTCTCGAAACGATCCCAGAAGTAACTCCCTGTTCTGTTTAC ACGGAGCTCTCCGCGCACACTCCTCAGCACCCTGTTGGCGAACCCCGGGT CGTTTCGCCCGCCGTGCCGTTGATTTTTCTGACATACCTCATCACGCTCT TGCGGCGGACGTGTTCCTTGAATAGCAGTCCGACCAGTTACCGCCTTTGT TGGCGTTGAGCTACTTCCGTCAACCGCGCCCTGCAAGCACGAGCGAAACC GAAGCAGCGTGGCTAGCGCGTGCCGCCGAGGACTGGCTTGCGACCAACCA GGTGAGGGATTAAAGTTTGGGTTTTCAGGCATTTATTTGGTTTGAACCTT CTTGATGGTGTCATTGGTCGTGATAGAGTGACAGTCAATTCCTTATGAAG GGAGATGCGTGATGACTTGATGTTTTGTTCTACCTACTCGGTCAAACTGT CGATATTTTGCGAAAGAGACTCGACGGAATGGGTCTCTGGCGGCCAACCA GCTACTTGAACTCGTTCTCTGCTCGTTGTACAGCACAGGTGATTCACCGA CAGTGGTTCGTCTGTTGGTTGCAGGCACGCCTAGCACACCTCCCGAAAGA GATATCACGCTCAAGTTCGATTTTCGACGACGTGCTTCCATTCTTGTTCC CCCAACATAATCAATTGCAACAGGGCGAAGTGAACGCTGTTAGACGAAGG GATGAGGCCGCACGTTCCTCGCTCGTGGAGGCCTTCTACAGCGGTGACGA CCTCCTTCGGCACATCGCGGCGGAGTACGCCCGATCCGCCCTCCGCGTCG CTGCCCCCTTCACAAGCGTCGCCGCCACCGACCGCCCGCGCGCGTTCTGG AGTCGCCTCGAGCAGTATCAGCAGCAGCAGGCCGATGGCGAACAGACCCG CGAGCCCCTCTTCAAGTGGCTGGGCATCGTCGAGCCCCCTCCCCCGACCG GCGACCAATCAACGTGGGAGGAGGATGACGATGGCGCCGTGGCTGACGAA GATGCGTGGGAGATGCCCTTCGCGGATGCTGAGATCGAGGAGGAGACGTT CGAAGTCCTGCCTCCCCCGCGAACGCTATTTACACCGTGGCCGTCCACGC GCACGGGAAGGGTAGACCTCAGGCCCACCCCTCCGAGTTCGCGGGCACGT AGGCGTGCACTGGACCCGGCCAGCAGACTACTGTCGGCAACGTCGACGTT CGGGACTCTGAATCTTCGGGCAGAGGTTGAACTTTGGGTGGCCGGATCGA ACATTCGCCAGCATGGTCTGCGGCGCCTGATGGTGAGTGTCTTGAACCGA TAGAGCAGAATGACGCGAAGCGTGTCTTAACTCTCCTGGGAGCCTGCACA TCGTCTTTTTTACACTCGATTTCCCTCCCGTCGTTGTGTACGCTAAGATC CTCTCCTCCCCTTTTTCTCCTTGTTCGCCTCTTTTCTGATCAAAACGCAA TATTTCAGAAGGAAACGTCCCACGACACAGTAGATAACCAACCGCTGTTT CGACCACGTTACCCAATCTACTGCGCACACCTTGACCTGGCTGCAGGCCG TCCAGGAACGCGAGCTGTCAAAGGCTTGGGTCGCGCTATGGGGTCGCCGT CGTCGTCTCGACCCCGACTCGAAGACTTGGGTCGACGCCGATGACTCCGG TGACGCCGCTGTACGTGCGGCAGCCCGACGTGTGGTTTTCCTCGAGGCCC ACCCAGAACAGGTGTGTGCGACAGTTGTCGAAACCTTTGCGAAAGGCAGG ACATTCTTCGACAACGCTCTGCCGCTTTCTCTGTATTTACTACCTCGGCA ACTGCCTCTGTCTGACTTTATCTCTTCGTCCGGGGGCAGCATAGGCAAAG GCCCGCGAATCCTACCGAGATAAAGCCATTGTGAAACGCAGCACTCCACC AAACCTCGCTGTCACGCACTGCATCTACCATCCTTTCAGGCACGGGGATG GGGAGTCTCGGCAGCTTACGTTTCTCCCCCCTTGGTTGTGAACGCAAACA GGATGCGTTCAATTCGTGTCCGCCCTTAACCCTAACCAGTTATTTGGGTC TTGTCGGTAGGCTTGCCAGGAGCAAGGAGCGATGATGAAGGCCTTCGTCC GCCGCAATGGAACAGAAGTTTCGAGAGCCGTAGAGGAAGCCGATGCCGAG CTAGCCGCTGCGTGGGAGCGTATGCACGACAACCGCGAAGACGTCGACGC TCCTTACTCCTCAATCACACCTCCAGCCTCTACTTGTCCTTCAACTTTTG ATCGCGCGTACGCCGCGTACCGCAAGCACATTGACACCCGGGCCTCCGCT GCCCTGGTGACGAACTCACTCCTCCCGACGTCCGCGGCATCGGCGACCCT GCAACTCCGGATGATGTGTCGGATGGCCGACGCCTGGGAGTCTGCAAACC ACCGACGGGTGTGCGCGCAGAGGTTCGCCGACCACTTCAGCGGCGCTGCT GGCGCAGAGAGGGTCGAGCAAGAAGGCGAGACTCTGCCGAAGCGACTGCG AGAGAGCCGCGCGGCGGCCAACGAAGACGCCGCAGCATTCGGTGCCGTCG TGGCCCTCGTGGTGGCGCCAATGCTGATTGGCCGCGCGTCTCAGATGTGC AAGTGCGACATGGGGGCTATCCTGAGCAACGCGGTGGACTGGGTGGCCTT CAACGGGGAAGCCTTCGAGGACGAATTGCAAAGGATGGAGACCAGGCTAC GACTGCCGCCAGGGACGATGGCAGGAAAGGACATAGAGGACGAAGGGTGC TCGGGCGGGGGTATGGGGAGAATGCTGGATGGATGCGAGTGCGAGCTCGA ATCTTCAGTTTCGTCTTGCAGACGGCTGGTGGCGTGCCCTATAATTACCC GTCGGATCTTGAGGGTGCCCGAGCCGGTTTGCCCGGAGTGCGAGGATGGC AGCGGTGTGTTTGGCACAGATTTGTTCGACCTGTTCGCTTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11057:3..3794+

>mRNA_Ecto-sp13_S_contig11057.927.1 ID=mRNA_Ecto-sp13_S_contig11057.927.1|Name=mRNA_Ecto-sp13_S_contig11057.927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2187bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11057:3..3794+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGAACAAGGGGAAGACGGAGCGGATGGACAACCTGCTACAGGCGGGGC
ATGGGGAGAACCGGTTGGACATTGGGAGCCTGTTGAGGACGGCGCGTGGG
GACAACGATGGGTGCCGGGGGTTGAACAAGGACCGGGAGCGGGGGCTGAT
GCCGGGCAACCAAATCAGGCACCGGTCCAGGAACTGGAACGAGCACCGCT
CCATGGGACGGGTCAGGGAACCGTTGAGGAGGAACGGGATGAGCCGGTCC
CGGTCCCGGAAGAAAACGGGCGTCTCTCAGCGGAGAATGAGTTCCGGCTG
GCAAACGCTTACGCGGAGGCATACCCTCGAGAGCTTGCCCGGGGGCGTGC
GGTTATTTACGGGGAGGAGAACCCACACTTTACAGTGCAGCGGGCTCGTG
CTCAGCAGTCCGACCAGTTACCGCCTTTGTTGGCGTTGAGCTACTTCCGT
CAACCGCGCCCTGCAAGCACGAGCGAAACCGAAGCAGCGTGGCTAGCGCG
TGCCGCCGAGGACTGGCTTGCGACCAACCAGGGCGAAGTGAACGCTGTTA
GACGAAGGGATGAGGCCGCACGTTCCTCGCTCGTGGAGGCCTTCTACAGC
GGTGACGACCTCCTTCGGCACATCGCGGCGGAGTACGCCCGATCCGCCCT
CCGCGTCGCTGCCCCCTTCACAAGCGTCGCCGCCACCGACCGCCCGCGCG
CGTTCTGGAGTCGCCTCGAGCAGTATCAGCAGCAGCAGGCCGATGGCGAA
CAGACCCGCGAGCCCCTCTTCAAGTGGCTGGGCATCGTCGAGCCCCCTCC
CCCGACCGGCGACCAATCAACGTGGGAGGAGGATGACGATGGCGCCGTGG
CTGACGAAGATGCGTGGGAGATGCCCTTCGCGGATGCTGAGATCGAGGAG
GAGACGTTCGAAGTCCTGCCTCCCCCGCGAACGCTATTTACACCGTGGCC
GTCCACGCGCACGGGAAGGGTAGACCTCAGGCCCACCCCTCCGAGTTCGC
GGGCACGTAGGCGTGCACTGGACCCGGCCAGCAGACTACTGTCGGCAACG
TCGACGTTCGGGACTCTGAATCTTCGGGCAGAGGTTGAACTTTGGGTGGC
CGGATCGAACATTCGCCAGCATGGTCTGCGGCGCCTGATGGCCGTCCAGG
AACGCGAGCTGTCAAAGGCTTGGGTCGCGCTATGGGGTCGCCGTCGTCGT
CTCGACCCCGACTCGAAGACTTGGGTCGACGCCGATGACTCCGGTGACGC
CGCTGTACGTGCGGCAGCCCGACGTGTGGTTTTCCTCGAGGCCCACCCAG
AACAGGCTTGCCAGGAGCAAGGAGCGATGATGAAGGCCTTCGTCCGCCGC
AATGGAACAGAAGTTTCGAGAGCCGTAGAGGAAGCCGATGCCGAGCTAGC
CGCTGCGTGGGAGCGTATGCACGACAACCGCGAAGACGTCGACGCTCCTT
ACTCCTCAATCACACCTCCAGCCTCTACTTGTCCTTCAACTTTTGATCGC
GCGTACGCCGCGTACCGCAAGCACATTGACACCCGGGCCTCCGCTGCCCT
GGTGACGAACTCACTCCTCCCGACGTCCGCGGCATCGGCGACCCTGCAAC
TCCGGATGATGTGTCGGATGGCCGACGCCTGGGAGTCTGCAAACCACCGA
CGGGTGTGCGCGCAGAGGTTCGCCGACCACTTCAGCGGCGCTGCTGGCGC
AGAGAGGGTCGAGCAAGAAGGCGAGACTCTGCCGAAGCGACTGCGAGAGA
GCCGCGCGGCGGCCAACGAAGACGCCGCAGCATTCGGTGCCGTCGTGGCC
CTCGTGGTGGCGCCAATGCTGATTGGCCGCGCGTCTCAGATGTGCAAGTG
CGACATGGGGGCTATCCTGAGCAACGCGGTGGACTGGGTGGCCTTCAACG
GGGAAGCCTTCGAGGACGAATTGCAAAGGATGGAGACCAGGCTACGACTG
CCGCCAGGGACGATGGCAGGAAAGGACATAGAGGACGAAGGGTGCTCGGG
CGGGGGTATGGGGAGAATGCTGGATGGATGCGAGTGCGAGCTCGAATCTT
CAGTTTCGTCTTGCAGACGGCTGGTGGCGTGCCCTATAATTACCCGTCGG
ATCTTGAGGGTGCCCGAGCCGGTTTGCCCGGAGTGCGAGGATGGCAGCGG
TGTGTTTGGCACAGATTTGTTCGACCTGTTCGCTTAA
back to top