mRNA_Ecto-sp13_S_contig11054.926.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11054.926.1
Unique NamemRNA_Ecto-sp13_S_contig11054.926.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11054.926.1 vs. uniprot
Match: A0A813I3Z8_POLGL (Tubulin beta chain (Fragment) n=2 Tax=Sar TaxID=2698737 RepID=A0A813I3Z8_POLGL)

HSP 1 Score: 162 bits (409), Expect = 4.930e-50
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVF 234
            QIG+KFWEVISDEHGIDPTG YHGDSDLQLERIN YFNEA+GGRYVPRAILMDLEPGTMDSVR+GPFGQLFRPDNFVF
Sbjct:   37 QIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVF 114
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BLAST of mRNA_Ecto-sp13_S_contig11054.926.1 vs. uniprot
Match: A0A813EA20_POLGL (Tubulin beta chain n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EA20_POLGL)

HSP 1 Score: 162 bits (409), Expect = 7.190e-50
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVF 234
            QIG+KFWEVISDEHGIDPTG YHGDSDLQLERIN YFNEA+GGRYVPRAILMDLEPGTMDSVR+GPFGQLFRPDNFVF
Sbjct:   15 QIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVF 92
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BLAST of mRNA_Ecto-sp13_S_contig11054.926.1 vs. uniprot
Match: A0A7S3WQ28_9SPIT (Tubulin beta chain (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WQ28_9SPIT)

HSP 1 Score: 160 bits (406), Expect = 8.070e-50
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVF 234
            QIG+KFWEVISDEHGIDPTG YHGDSDLQLERIN Y+NEA+GGRYVPRAILMDLEPGTMDSVR+GPFGQLFRPDNFVF
Sbjct:   24 QIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVF 101
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BLAST of mRNA_Ecto-sp13_S_contig11054.926.1 vs. uniprot
Match: A0A813M3F6_POLGL (Tubulin beta chain n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813M3F6_POLGL)

HSP 1 Score: 162 bits (409), Expect = 8.680e-50
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVF 234
            QIG+KFWEVISDEHGIDPTG YHGDSDLQLERIN YFNEA+GGRYVPRAILMDLEPGTMDSVR+GPFGQLFRPDNFVF
Sbjct:   15 QIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVF 92
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BLAST of mRNA_Ecto-sp13_S_contig11054.926.1 vs. uniprot
Match: A0A6A0AFT1_HAELA (TUB3 protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A6A0AFT1_HAELA)

HSP 1 Score: 161 bits (408), Expect = 9.010e-50
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVF 234
            QIG+KFWEV+SDEHG+DPTG YHGDSDLQLERIN YFNEA+GGRYVPRAILMDLEPGTMDSVRSGPFGQ+FRPDNFVF
Sbjct:   15 QIGAKFWEVVSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQIFRPDNFVF 92
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BLAST of mRNA_Ecto-sp13_S_contig11054.926.1 vs. uniprot
Match: A0A3B4WUC1_SERLL (Tubulin beta-1 chain-like n=3 Tax=Eukaryota TaxID=2759 RepID=A0A3B4WUC1_SERLL)

HSP 1 Score: 160 bits (405), Expect = 1.180e-49
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVF 234
            QIG+KFWEV+SDEHGIDPTG YHGDSDLQLERIN Y+NEA+GGRYVPRA+LMDLEPGTMDSVRSGPFGQ+FRPDNFVF
Sbjct:   15 QIGAKFWEVVSDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVF 92
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BLAST of mRNA_Ecto-sp13_S_contig11054.926.1 vs. uniprot
Match: A0A812PSM6_9DINO (Tubulin beta chain n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812PSM6_9DINO)

HSP 1 Score: 160 bits (405), Expect = 1.470e-49
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVF 234
            QIG+KFWEVI+DEHGIDPTG YHGDSDLQLERIN YFNEA+GGRYVPRA+LMDLEPGTMDSVR+GPFGQLFRPDNFVF
Sbjct:   15 QIGAKFWEVIADEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVF 92
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11054.926.1 vs. uniprot
Match: A0A7S3JLK0_9SPIT (Tubulin beta chain (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JLK0_9SPIT)

HSP 1 Score: 160 bits (404), Expect = 1.580e-49
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVF 234
            QIG+KFWEVISDEHG+DPTG YHGDSDLQLERIN Y+NEA+GGRYVPRA+LMDLEPGTMDSVR+GPFGQLFRPDNFVF
Sbjct:   18 QIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVF 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11054.926.1 vs. uniprot
Match: A0A812X5Y3_9DINO (Tubulin beta chain n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812X5Y3_9DINO)

HSP 1 Score: 160 bits (405), Expect = 2.210e-49
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVF 234
            QIG+KFWEVI+DEHGIDPTG YHGDSDLQLERIN YFNEA+GGRYVPRA+LMDLEPGTMDSVR+GPFGQLFRPDNFVF
Sbjct:   15 QIGAKFWEVIADEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVF 92
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11054.926.1 vs. uniprot
Match: A0A3P9N981_POERE (Tubulin domain-containing protein n=2 Tax=Poeciliinae TaxID=586240 RepID=A0A3P9N981_POERE)

HSP 1 Score: 159 bits (402), Expect = 2.490e-49
Identity = 70/78 (89.74%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVF 234
            QIG+KFWEVISDEHGIDPTGVYHGDSDLQL+RIN Y+NEASGG+YVPRA+L+DLEPGTMDSVRSGPFGQ+FRPDNFVF
Sbjct:   15 QIGAKFWEVISDEHGIDPTGVYHGDSDLQLDRINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFVF 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11054.926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813I3Z8_POLGL4.930e-5093.59Tubulin beta chain (Fragment) n=2 Tax=Sar TaxID=26... [more]
A0A813EA20_POLGL7.190e-5093.59Tubulin beta chain n=1 Tax=Polarella glacialis Tax... [more]
A0A7S3WQ28_9SPIT8.070e-5092.31Tubulin beta chain (Fragment) n=1 Tax=Strombidinop... [more]
A0A813M3F6_POLGL8.680e-5093.59Tubulin beta chain n=1 Tax=Polarella glacialis Tax... [more]
A0A6A0AFT1_HAELA9.010e-5091.03TUB3 protein (Fragment) n=2 Tax=Eukaryota TaxID=27... [more]
A0A3B4WUC1_SERLL1.180e-4989.74Tubulin beta-1 chain-like n=3 Tax=Eukaryota TaxID=... [more]
A0A812PSM6_9DINO1.470e-4991.03Tubulin beta chain n=2 Tax=Symbiodinium TaxID=2949... [more]
A0A7S3JLK0_9SPIT1.580e-4989.74Tubulin beta chain (Fragment) n=1 Tax=Euplotes har... [more]
A0A812X5Y3_9DINO2.210e-4991.03Tubulin beta chain n=4 Tax=Symbiodinium TaxID=2949... [more]
A0A3P9N981_POERE2.490e-4989.74Tubulin domain-containing protein n=2 Tax=Poecilii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11054contigEcto-sp13_S_contig11054:5327..5560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score167.5
Seed ortholog evalue2.4e-39
Seed eggNOG ortholog2880.D7FNQ3
Model size234
KEGG koko:K07375
KEGG Pathwayko04145,ko04540,ko05130,map04145,map04540,map05130
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464
Exons1
EggNOG free text desc.structural constituent of cytoskeleton
EggNOG OGsCOG5023@1,KOG1375@2759
Cds size234
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462573.3895485-CDS-Ecto-sp13_S_contig11054:5326..55601681462573.3895485-CDS-Ecto-sp13_S_contig11054:5326..5560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11054 5327..5560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11054.926.1prot_Ecto-sp13_S_contig11054.926.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11054 5327..5560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11054.926.1

>prot_Ecto-sp13_S_contig11054.926.1 ID=prot_Ecto-sp13_S_contig11054.926.1|Name=mRNA_Ecto-sp13_S_contig11054.926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAI
LMDLEPGTMDSVRSGPFGQLFRPDNFVF
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mRNA from alignment at Ecto-sp13_S_contig11054:5327..5560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11054.926.1 ID=mRNA_Ecto-sp13_S_contig11054.926.1|Name=mRNA_Ecto-sp13_S_contig11054.926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11054:5327..5560+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCGGTTCCAAGTTCTGGGAAGTGATCTCGGACGAGCACGGCATCGA
CCCCACCGGTGTCTACCATGGCGACTCCGACCTCCAGCTCGAGCGCATCA
ACTGCTACTTCAATGAGGCCTCCGGCGGCCGCTACGTGCCCCGCGCCATC
CTCATGGACCTCGAGCCCGGAACCATGGACTCGGTTCGCTCGGGACCCTT
CGGGCAGCTTTTCAGGCCCGACAACTTTGTGTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11054:5327..5560+

>mRNA_Ecto-sp13_S_contig11054.926.1 ID=mRNA_Ecto-sp13_S_contig11054.926.1|Name=mRNA_Ecto-sp13_S_contig11054.926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11054:5327..5560+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCGGTTCCAAGTTCTGGGAAGTGATCTCGGACGAGCACGGCATCGA
CCCCACCGGTGTCTACCATGGCGACTCCGACCTCCAGCTCGAGCGCATCA
ACTGCTACTTCAATGAGGCCTCCGGCGGCCGCTACGTGCCCCGCGCCATC
CTCATGGACCTCGAGCCCGGAACCATGGACTCGGTTCGCTCGGGACCCTT
CGGGCAGCTTTTCAGGCCCGACAACTTTGTGTTC
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