mRNA_Ecto-sp13_S_contig11037.916.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11037.916.1
Unique NamemRNA_Ecto-sp13_S_contig11037.916.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11037.916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11037contigEcto-sp13_S_contig11037:78..665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size588
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462572.2447486-UTR-Ecto-sp13_S_contig11037:77..1951681462572.2447486-UTR-Ecto-sp13_S_contig11037:77..195Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11037 78..195 +
1681462572.27585-UTR-Ecto-sp13_S_contig11037:558..6651681462572.27585-UTR-Ecto-sp13_S_contig11037:558..665Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11037 559..665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462572.2580934-CDS-Ecto-sp13_S_contig11037:195..5581681462572.2580934-CDS-Ecto-sp13_S_contig11037:195..558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11037 196..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11037.916.1prot_Ecto-sp13_S_contig11037.916.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11037 196..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11037.916.1

>prot_Ecto-sp13_S_contig11037.916.1 ID=prot_Ecto-sp13_S_contig11037.916.1|Name=mRNA_Ecto-sp13_S_contig11037.916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MHRPHILVQAVKIHPTHPKGSRALAFMSCRMKRAGCCEHGRAPINAALTS
IPWHPSRLVSLRVRAGLRRLSLDWDRSLLVLNFFSRQLALKKEFSTMHSP
NSPENYFLLDDQSVIFLMFH*
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mRNA from alignment at Ecto-sp13_S_contig11037:78..665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11037.916.1 ID=mRNA_Ecto-sp13_S_contig11037.916.1|Name=mRNA_Ecto-sp13_S_contig11037.916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11037:78..665+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGTGCACCGAGGCGACTATGCGCGGGTACCGATGCCTGAAAAGTGAGT
GCGCCGCCCCCCGTCGACTCGGTTTCTCCTCACTGTGTGCATTCAGATAT
TTGGCTCTTTGAGAAAACATGCATCGTCCACACATACTTGTACAAGCAGT
TAAAATTCATCCTACACACCCGAAAGGAAGCCGCGCGCTGGCTTTCATGT
CATGTCGCATGAAAAGGGCCGGTTGTTGCGAACACGGGAGAGCACCCATT
AATGCCGCGCTCACTTCGATCCCGTGGCACCCCTCCCGCCTTGTGTCTCT
ACGTGTCCGCGCCGGCCTCCGCAGGCTGTCTCTTGATTGGGATCGTTCTC
TACTTGTGTTGAACTTTTTTTCAAGACAGCTCGCTCTAAAAAAGGAGTTT
TCCACCATGCATTCACCTAATTCACCCGAAAATTATTTTCTGCTCGACGA
TCAGTCCGTAATTTTTTTGATGTTTCACTGAAGGAGCTGACAAGCAGCAG
GATCCGCGAAGACCGGTAGAGTACTGCTGTTGTTCGTATGTTCAGAGGCG
CACGCCAAAATCATCTTCCCAACCCAGGACATTTGTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11037:78..665+

>mRNA_Ecto-sp13_S_contig11037.916.1 ID=mRNA_Ecto-sp13_S_contig11037.916.1|Name=mRNA_Ecto-sp13_S_contig11037.916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11037:78..665+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGTCCACACATACTTGTACAAGCAGTTAAAATTCATCCTACACA
CCCGAAAGGAAGCCGCGCGCTGGCTTTCATGTCATGTCGCATGAAAAGGG
CCGGTTGTTGCGAACACGGGAGAGCACCCATTAATGCCGCGCTCACTTCG
ATCCCGTGGCACCCCTCCCGCCTTGTGTCTCTACGTGTCCGCGCCGGCCT
CCGCAGGCTGTCTCTTGATTGGGATCGTTCTCTACTTGTGTTGAACTTTT
TTTCAAGACAGCTCGCTCTAAAAAAGGAGTTTTCCACCATGCATTCACCT
AATTCACCCGAAAATTATTTTCTGCTCGACGATCAGTCCGTAATTTTTTT
GATGTTTCACTGA
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