mRNA_Ecto-sp13_S_contig1103.911.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1103.911.1
Unique NamemRNA_Ecto-sp13_S_contig1103.911.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1103.911.1 vs. uniprot
Match: D8LIQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ3_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.980e-46
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 1 
Query:    1 ATCDGGGYSAAAEYTWNAGDAWTYGDTAFYEKAERIKAEAWELLTKADALEALSESSEDTLTNMDEANALTATAMRVEAERIENSARQAGAYPKGW 288
            ATCDGGGYSAAAE TW+AGDAWTYGDTAFYEKAERIKAEA ELL+KADALEALSESSED  TNMDE+NALTA AMRVEAERIENSAR+AGAYPKGW
Sbjct:  281 ATCDGGGYSAAAEXTWDAGDAWTYGDTAFYEKAERIKAEASELLSKADALEALSESSEDESTNMDESNALTAAAMRVEAERIENSAREAGAYPKGW 376
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BLAST of mRNA_Ecto-sp13_S_contig1103.911.1 vs. uniprot
Match: D8LIQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ2_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 4.050e-27
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 ATCDGGGYSAAAEYTWNAGDAWTYGDTAFYEKAERIKAEAWELLTKADALEALSESSEDTLTN-MDEANALTATAMRVEAERIENSARQAGAYPKGW 288
            ATCDG GYS AA++TWNA +AWTYGD AFY+KAERIK EA  L  +A+ LE  SE  E TLT  +DE +ALTA AM  +A+++EN+AR+AGAYPKGW
Sbjct:  385 ATCDGDGYSGAADFTWNADEAWTYGDRAFYDKAERIKDEAQALRAEAELLELSSEGQEGTLTGGIDEIDALTAAAMWKQADQLENAAREAGAYPKGW 481
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BLAST of mRNA_Ecto-sp13_S_contig1103.911.1 vs. uniprot
Match: A0A6H5K1B0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B0_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.550e-9
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ATCDGGGYSAAAEYTWNAGDAWTYGDTAFYEKAERIKAE 117
            ATCDGGGY   A++TWNA +AWTYGD AFY+KAERIK E
Sbjct:  415 ATCDGGGYYGVADFTWNADEAWTYGDRAFYDKAERIKNE 453
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1103.911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIQ3_ECTSI1.980e-4690.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIQ2_ECTSI4.050e-2763.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1B0_9PHAE5.550e-974.36CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1103contigEcto-sp13_S_contig1103:2481..4531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score120.6
Seed ortholog evalue4.2e-25
Seed eggNOG ortholog2880.D8LIQ2
Model size657
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2E6BS@1,2SD24@2759
Cds size291
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462571.6050093-CDS-Ecto-sp13_S_contig1103:2480..26181681462571.6050093-CDS-Ecto-sp13_S_contig1103:2480..2618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1103 2481..2618 +
1681462571.6196692-CDS-Ecto-sp13_S_contig1103:4012..41651681462571.6196692-CDS-Ecto-sp13_S_contig1103:4012..4165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1103 4013..4165 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462571.6418486-UTR-Ecto-sp13_S_contig1103:4165..45311681462571.6418486-UTR-Ecto-sp13_S_contig1103:4165..4531Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1103 4166..4531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1103.911.1prot_Ecto-sp13_S_contig1103.911.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1103 2481..4165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1103.911.1

>prot_Ecto-sp13_S_contig1103.911.1 ID=prot_Ecto-sp13_S_contig1103.911.1|Name=mRNA_Ecto-sp13_S_contig1103.911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
ATCDGGGYSAAAEYTWNAGDAWTYGDTAFYEKAERIKAEAWELLTKADAL
EALSESSEDTLTNMDEANALTATAMRVEAERIENSARQAGAYPKGW*
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mRNA from alignment at Ecto-sp13_S_contig1103:2481..4531+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1103.911.1 ID=mRNA_Ecto-sp13_S_contig1103.911.1|Name=mRNA_Ecto-sp13_S_contig1103.911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2051bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1103:2481..4531+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGACGTGTGATGGTGGGGGCTACTCTGCAGCGGCTGAATACACGTGGAA
CGCCGGCGACGCATGGACCTACGGCGACACCGCGTTTTACGAGAAGGCGG
AGCGTATCAAGGCGGAGGCTTGGGAGTTACTAACGAAGGTATGTCCTTGC
TCTCGCTGTTGTCCTCGCTCACCTTGATGTTATTCTCGTGACGCAAGGAG
ACGCAAACACGAAGCTTGCGGTCCTCCTGGTCCGACAACGTGTTTCCCGG
TGTTCCCCCGATCTACCCTCACCCTGCATACTCTTGTCTCAAGTGAAGAG
CTCCGAGCAGGTCCCACCAAGAATGCTACCTATCACTTCTTCACATTTAC
CTTCAATAAGCAAGACAGAAATGTCCGGCAGTTCGGGTCTCCCAGACTTT
CTACAATTTTATTGAACCGCCCATGGGTCACCCATGGGTCCCCAAAGGTC
ACTCATGATGAGCACCACGTGGTGCCCATGGGCGGCCCAAGGGTGACCCA
TGGGCATGCTCATCGGCATGCCCATGGGCATGTCCATCGGTGACCCATAT
GGGCTGCCCATGGGCGGCCATTGAGTGCCCTTCAACCGAAACCAGTGTGC
TCCGTAACAATAGACTATCTGCTCTGAAACGGGCAGTATAGCGGCAAATA
CCCCTAACGATAACCCTAACCCTAACCCCAAGGCCACACAATACGTGCTA
GGTTGGCGCTGGGTGTCTATTCTCTCGGTTGATGTGCTGATGGCTAAGTA
CAAGGTGGACGTGCCGGTGGCGAGTTCGATGGGAGAGTGCCCACGGTAGG
CATTTCGTGGGCTATTTATAGACGGACCATGGGTGACCCGTGGGTGACGT
ATGGGTGACCCATGGGCGGTTTAACAAAACTGTCAGTAGAGCGGGAGATT
GGGCAGTCCCTCTCCTCAACTACAAACGATGAAATACACCTGATTAAGGC
CCAAAAGGTTCCTCTTGGTTTCTCCCGCAAGCTCTTCAAGGAAAGGGGTT
GCCCGAGATGGCTGCATTGTCACGCCTAGCCAGGATGTATCGTACTGATA
CATTCCGATTCATACGCATGCATACACACTCGAATACATTTCCAATATGG
GTCATTTAGACAAATGAGGCGAAACAACAAGGTGTAAAACAAGTCGATAC
AGTCGGAGTGGCTTGAAGGGGCACCCAGTCCCCCCCATTGAGTGATTGCG
GATAATGAAGTGAATCTGGTCGCTCCAGGGCGAATTCCATGTCACAAACG
GAACGTCGCGCTCACCAGCCTTTACACAACTCCCAAAAGTGAAGCCAAAG
TTATCGACAAAATTGTAATAAATATCCCACCCAAAGATTACTTTGAGACG
TTCGCCACATTACCGGGGTGGAAGATCCTCTCAAGCGCGTCCCATGGCGT
TCACTTGTCTTCGATGGGGTAAACTCGTGTGCACTATGGTGTCTACGGCA
ACGGCAGAGAGGACCGCGGGAATCCAGTCAACTAAAACACATTCCATGCA
CGAAAACACCCCGACAAAAAAACAAACAACAGGCTGACGCTTTGGAGGCG
CTATCGGAGTCATCCGAGGACACATTGACGAACATGGACGAGGCAAACGC
GCTGACAGCTACCGCGATGCGGGTGGAGGCTGAAAGGATTGAGAACTCGG
CCAGGCAGGCCGGGGCCTATCCGAAAGGGTGGTGATGCCGTGAAGATGTC
GAGAAGCGTTCTCCGTCCTCGGAAGTCCCAGCTGTTGCTCACGCTGACAT
GATCAACTAGCTGGATAGCATAGCCAGGAGGCGGAAGCCGATGGGTAAGG
TTAGAAGTGCTACCCGAGAGGGTGGGCGTGTACTCTAGGAGGTGAAAACC
GTTTCCGTTGAATGTGGCATACTCATCGGTGAGGAAACTGAGGAGAGACG
TGGCAGCTCAAGCCTACCGCGATAGAGATCGGATCTTTCTTAGAGGCCGA
ACGTAACCCTGAGCAACTTTCACGATTGGTTAGATCTCGTTCAGACGTAA
ATCCACCAGGAAAAGACGGGCAGAGAATAACATACGACCAGATGTTCAAC
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1103:2481..4531+

>mRNA_Ecto-sp13_S_contig1103.911.1 ID=mRNA_Ecto-sp13_S_contig1103.911.1|Name=mRNA_Ecto-sp13_S_contig1103.911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1103:2481..4531+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGACGTGTGATGGTGGGGGCTACTCTGCAGCGGCTGAATACACGTGGAA
CGCCGGCGACGCATGGACCTACGGCGACACCGCGTTTTACGAGAAGGCGG
AGCGTATCAAGGCGGAGGCTTGGGAGTTACTAACGAAGGCTGACGCTTTG
GAGGCGCTATCGGAGTCATCCGAGGACACATTGACGAACATGGACGAGGC
AAACGCGCTGACAGCTACCGCGATGCGGGTGGAGGCTGAAAGGATTGAGA
ACTCGGCCAGGCAGGCCGGGGCCTATCCGAAAGGGTGGTGA
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