mRNA_Ecto-sp13_S_contig1102.904.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1102.904.1
Unique NamemRNA_Ecto-sp13_S_contig1102.904.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1102.904.1 vs. uniprot
Match: A0A6H5JG98_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG98_9PHAE)

HSP 1 Score: 768 bits (1983), Expect = 5.720e-271
Identity = 411/422 (97.39%), Postives = 415/422 (98.34%), Query Frame = 2 
Query:    2 KIRNMEEETARRDDEKRFKQLRRSAQEANALCTIFACVCTGYGGYALSFTVALGLGANVTSTYLLVAGGYLLLLAGAVGAWAARSGRPDAFRIHFGALLPAGALYASLTVVQLVSVGPSDRRVTQAWDNLNAEGESLYSVQTKVGTMLIVSGVLSVVTFALVVCAAVASRAARNALLHLPESSPHRHRRQGKLSRGERLAVAWALALAATSTFIDGSFAVFSAWLARDREQAGVWLLAIWEGMGRGDGRYVDGDTFIVSTAIIVATIVGPGAMLYAWAVYCRKGYRFSVGILVCAASLHTQLLRYVTSADSSESSAEPGSKAFFIAASVVLALLQVAGALAVLIFNVGRMTKRVHAAEVHYRALLLEHGRLSDKIETRDEGDGGEGAVAGPEQRGGALRKRKKDGDGTAATLGVTRRGTRST 1267
            KIRNMEEETARRDDEKRFKQLRRSAQEANALCTIFACVCTGYGGYALSFT+ALGLGANVTSTYLLVAGGYLLLLAG VGAWAARSGRPDAFRIHFGALLPAGALYASLTVVQLVSVGPSDRRVTQAWDNL+AEG+SLYSVQTKVGTMLIVSGVLSVVTFALVVCAAVASRAARNALLHLPESSPHRHRRQGKLSRGERLAVAWALALAATSTFIDGSFAV SAWLARD EQAGVWLLAIWEGMGRGDGRYVDGDTFIVSTAIIVATIVGPGAMLYAWAVYCRKGYRFSVGILVCAASLHTQLLRYVTSADSSESSAEPGSKAFFIAASVVLALLQVAGALAVLIFNVGRMTKRVHAAEVHYRALLLEHGRLSDK+ETR EGDGGEGAV GPE RGGALRKRKKDGDGTAATLG TRRGTRST
Sbjct:  529 KIRNMEEETARRDDEKRFKQLRRSAQEANALCTIFACVCTGYGGYALSFTMALGLGANVTSTYLLVAGGYLLLLAGVVGAWAARSGRPDAFRIHFGALLPAGALYASLTVVQLVSVGPSDRRVTQAWDNLHAEGDSLYSVQTKVGTMLIVSGVLSVVTFALVVCAAVASRAARNALLHLPESSPHRHRRQGKLSRGERLAVAWALALAATSTFIDGSFAVISAWLARDGEQAGVWLLAIWEGMGRGDGRYVDGDTFIVSTAIIVATIVGPGAMLYAWAVYCRKGYRFSVGILVCAASLHTQLLRYVTSADSSESSAEPGSKAFFIAASVVLALLQVAGALAVLIFNVGRMTKRVHAAEVHYRALLLEHGRLSDKVETRHEGDGGEGAVGGPEHRGGALRKRKKDGDGTAATLGGTRRGTRST 950
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BLAST of mRNA_Ecto-sp13_S_contig1102.904.1 vs. uniprot
Match: D8LG14_ECTSI (CRAL/TRIO, N-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG14_ECTSI)

HSP 1 Score: 660 bits (1702), Expect = 1.800e-227
Identity = 355/359 (98.89%), Postives = 356/359 (99.16%), Query Frame = 2 
Query:    5 IRNMEEETARRDDEKRFKQLRRSAQEANALCTIFACVCTGYGGYALSFTVALGLGANVTSTYLLVAGGYLLLLAGAVGAWAARSGRPDAFRIHFGALLPAGALYASLTVVQLVSVGPSDRRVTQAWDNLNAEGESLYSVQTKVGTMLIVSGVLSVVTFALVVCAAVASRAARNALLHLPESSPHRHRRQGKLSRGERLAVAWALALAATSTFIDGSFAVFSAWLARDREQAGVWLLAIWEGMGRGDGRYVDGDTFIVSTAIIVATIVGPGAMLYAWAVYCRKGYRFSVGILVCAASLHTQLLRYVTSADSSESSAEPGSKAFFIAASVVLALLQVAGALAVLIFNVGRMTKRVHAAEVH 1081
            IRNMEEETARRDDEKRFKQLRRSAQEANALCTIFACVCTGYGGYALSFTVALGLGANVTSTYLLVAGGYLLLLAGAVGAWAARSGRPDAFRIHFGALLPAGALYASLTVVQLVSVGPSDRRV QAWDNL+AEGESLYSVQTKVGTMLIVSGVLSVVTFALVVCAAVASRAARNALLHLPESSPHRHRRQGKLSRGERLAVAWALALAATSTFIDGSFAVFSAWLARD EQAGVWLLAIWEGMGRGDGRYVDGDTFIVSTAIIVATIVGPGAMLYAWAVYCRKGYRFSVGILVCAASLHTQLLRYVTSADSSESSAEPGSKAFFIAASVVLALLQVAGALAVLIFNVGRMTKRVHAAE H
Sbjct:  669 IRNMEEETARRDDEKRFKQLRRSAQEANALCTIFACVCTGYGGYALSFTVALGLGANVTSTYLLVAGGYLLLLAGAVGAWAARSGRPDAFRIHFGALLPAGALYASLTVVQLVSVGPSDRRVMQAWDNLHAEGESLYSVQTKVGTMLIVSGVLSVVTFALVVCAAVASRAARNALLHLPESSPHRHRRQGKLSRGERLAVAWALALAATSTFIDGSFAVFSAWLARDGEQAGVWLLAIWEGMGRGDGRYVDGDTFIVSTAIIVATIVGPGAMLYAWAVYCRKGYRFSVGILVCAASLHTQLLRYVTSADSSESSAEPGSKAFFIAASVVLALLQVAGALAVLIFNVGRMTKRVHAAEKH 1027
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BLAST of mRNA_Ecto-sp13_S_contig1102.904.1 vs. uniprot
Match: A0A812WIG6_SYMMI (Ebp protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WIG6_SYMMI)

HSP 1 Score: 79.0 bits (193), Expect = 1.780e-12
Identity = 35/113 (30.97%), Postives = 72/113 (63.72%), Query Frame = 2 
Query:  578 LSRGERLAVAWALALAATSTFIDGSFAVFSAWLARDREQAGVWLLAIWEGMGRGDGRYVDGDTFIVSTAIIVATIVGPGAMLYAWAVYCRKGYRFSVGILVCAASLHTQLLRY 916
            ++  ++L + W++ +     +++G++A+F A+   D E +  W +++W+ MG+ D RY   D F+VS+  I+AT+VGP  ++YAW++   + +R   GI+V +  ++TQ+L +
Sbjct:  131 VTMSDKLILVWSILMGLFHIYLNGTYAMF-AYRIVDSESSSAWFISLWQHMGKYDTRYTTADDFLVSSNGIMATVVGPLLLVYAWSIVSGRSFRQVCGIVVNSVEIYTQVLYF 242
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BLAST of mRNA_Ecto-sp13_S_contig1102.904.1 vs. uniprot
Match: A0A7S3M4F2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4F2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.400e-7
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 2 
Query:  590 ERLAVAWALALAATSTFIDGSFAVFSAWLARDREQAGVWLLAIWEGMGRGDGRYVDGDTFIVSTAIIVATIVGPGAMLYAWAVYCRKGYR 859
            +R  +AW +     + F++GS AVF+   A + +  G W+ A+   +GR D R+++ D FI S+  I+A IVGP  + YAW  +    YR
Sbjct:  171 DRFLIAWGIFGGLFNIFVNGSLAVFARH-ADESQLKGSWMFALLNYLGRADSRFIESDPFIRSSMTILAAIVGPLMLFYAWTTFVYAPYR 259
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1102.904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JG98_9PHAE5.720e-27197.39CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D8LG14_ECTSI1.800e-22798.89CRAL/TRIO, N-terminus family protein n=1 Tax=Ectoc... [more]
A0A812WIG6_SYMMI1.780e-1230.97Ebp protein n=1 Tax=Symbiodinium microadriaticum T... [more]
A0A7S3M4F2_9STRA1.400e-735.56Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1102contigEcto-sp13_S_contig1102:14835..16558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score660.2
Seed ortholog evalue6.3e-187
Seed eggNOG ortholog2880.D8LG14
Model size1270
KEGG koko:K19996
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.cholestenol delta-isomerase activity
EggNOG OGsKOG1471@1,KOG1471@2759,KOG4826@1,KOG4826@2759
Cds size1257
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462571.2217684-CDS-Ecto-sp13_S_contig1102:14834..159811681462571.2217684-CDS-Ecto-sp13_S_contig1102:14834..15981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1102 14835..15981 -
1681462571.2335515-CDS-Ecto-sp13_S_contig1102:16435..165451681462571.2335515-CDS-Ecto-sp13_S_contig1102:16435..16545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1102 16436..16545 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462571.242459-UTR-Ecto-sp13_S_contig1102:16545..165581681462571.242459-UTR-Ecto-sp13_S_contig1102:16545..16558Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1102 16546..16558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1102.904.1prot_Ecto-sp13_S_contig1102.904.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1102 14835..16545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1102.904.1

>prot_Ecto-sp13_S_contig1102.904.1 ID=prot_Ecto-sp13_S_contig1102.904.1|Name=mRNA_Ecto-sp13_S_contig1102.904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=419bp
MEEETARRDDEKRFKQLRRSAQEANALCTIFACVCTGYGGYALSFTVALG
LGANVTSTYLLVAGGYLLLLAGAVGAWAARSGRPDAFRIHFGALLPAGAL
YASLTVVQLVSVGPSDRRVTQAWDNLNAEGESLYSVQTKVGTMLIVSGVL
SVVTFALVVCAAVASRAARNALLHLPESSPHRHRRQGKLSRGERLAVAWA
LALAATSTFIDGSFAVFSAWLARDREQAGVWLLAIWEGMGRGDGRYVDGD
TFIVSTAIIVATIVGPGAMLYAWAVYCRKGYRFSVGILVCAASLHTQLLR
YVTSADSSESSAEPGSKAFFIAASVVLALLQVAGALAVLIFNVGRMTKRV
HAAEVHYRALLLEHGRLSDKIETRDEGDGGEGAVAGPEQRGGALRKRKKD
GDGTAATLGVTRRGTRST*
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mRNA from alignment at Ecto-sp13_S_contig1102:14835..16558-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1102.904.1 ID=mRNA_Ecto-sp13_S_contig1102.904.1|Name=mRNA_Ecto-sp13_S_contig1102.904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1724bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1102:14835..16558- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAATCAGGAACATGGAGGAGGAGACGGCACGTCGAGACGACGAGAAGC
GCTTCAAGCAGCTCCGACGGTCGGCCCAGGAGGCGAACGCTCTCTGCACC
ATTTTCGCGTGTGTGTGCACGGGGTGAGTCGAAAACTTGGAGTAACATCT
GTTTTAGAGGCCAACGGCCGAACACGATAAAGAAAAATGGTAGGAGAATG
TTGGGGAGGTTATACCGATATTAAACGTTGGGAGCAACAAGGCGCTCTAC
CTGCGCTCTCGATTAGTTTCGGGTGATTGCGGCGGTGTATCGCCGACCGG
TGTTAATATCTGTTCGTCACGTATAGGGCACGGTGTTCTCTGCTCTGCCA
GTGTTTTGCGTGCTTGAGCACCAGGACGAACAATGCGAGGTTTCCACGGC
AGGCCAGGAAACCGCTTCAAAATTTCATCCGACACGCCCAAAATAAAAGA
AACATGTGGCGTCAGCACCAGCTTTCAGCACCATCAGTTTTTCCTCCCTC
TCGCGTCTGTTTCCCCCTCTTCCGCTGCTGCTGCCACGTCTCCGCCCCCG
GCCGCCCGGTGGTGCTCGCGCCATCAGATACGGCGGTTATGCGTTGTCGT
TCACCGTGGCGCTCGGCCTCGGCGCCAACGTCACCTCGACCTACCTCCTG
GTGGCTGGCGGGTACCTCCTGCTGCTGGCCGGGGCCGTCGGCGCGTGGGC
CGCGAGGAGCGGTCGTCCCGACGCCTTCCGCATCCACTTCGGGGCGCTCC
TTCCCGCAGGAGCGCTGTACGCTTCCTTGACCGTGGTTCAGCTGGTGAGC
GTGGGACCCAGCGACCGGCGAGTGACGCAGGCGTGGGATAACCTCAACGC
CGAGGGGGAAAGCCTCTACAGCGTGCAGACCAAGGTCGGGACGATGCTCA
TCGTCAGCGGGGTGCTCAGCGTGGTCACCTTCGCCCTGGTGGTGTGCGCG
GCGGTGGCCTCGCGGGCGGCGCGGAACGCGCTGCTGCACCTGCCGGAGAG
CAGCCCGCACCGGCACCGCAGGCAGGGGAAGCTGTCCCGCGGGGAGAGGC
TGGCGGTCGCGTGGGCGCTAGCCCTCGCCGCCACCTCGACCTTCATCGAC
GGGTCCTTCGCGGTGTTCAGCGCGTGGCTGGCGCGCGACAGGGAGCAGGC
CGGGGTGTGGCTGCTGGCGATCTGGGAAGGGATGGGCCGCGGGGACGGTC
GATACGTCGACGGGGACACGTTCATCGTCTCCACGGCGATCATCGTCGCG
ACGATCGTCGGCCCCGGGGCGATGCTCTACGCGTGGGCCGTCTACTGTCG
GAAGGGGTACCGGTTCTCGGTGGGAATCCTGGTGTGCGCGGCCTCGCTCC
ACACTCAGCTGCTGAGATACGTCACCTCGGCGGACTCCTCGGAGTCGAGT
GCCGAGCCCGGCAGCAAGGCGTTCTTCATCGCCGCGAGCGTCGTCCTGGC
GCTGCTGCAGGTGGCCGGCGCCCTCGCCGTCCTAATCTTCAACGTCGGGA
GGATGACCAAGAGGGTCCACGCCGCCGAGGTGCACTACCGAGCCTTGCTG
CTGGAGCACGGCCGACTCTCCGACAAAATCGAGACCAGAGACGAAGGCGA
TGGCGGCGAAGGCGCTGTTGCAGGCCCGGAACAACGAGGAGGCGCTTTGC
GGAAGCGGAAGAAGGACGGCGATGGGACTGCCGCTACACTTGGCGTGACG
CGGCGGGGGACCCGCAGCACGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1102:14835..16558-

>mRNA_Ecto-sp13_S_contig1102.904.1 ID=mRNA_Ecto-sp13_S_contig1102.904.1|Name=mRNA_Ecto-sp13_S_contig1102.904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1257bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1102:14835..16558- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAGGAGACGGCACGTCGAGACGACGAGAAGCGCTTCAAGCAGCT
CCGACGGTCGGCCCAGGAGGCGAACGCTCTCTGCACCATTTTCGCGTGTG
TGTGCACGGGATACGGCGGTTATGCGTTGTCGTTCACCGTGGCGCTCGGC
CTCGGCGCCAACGTCACCTCGACCTACCTCCTGGTGGCTGGCGGGTACCT
CCTGCTGCTGGCCGGGGCCGTCGGCGCGTGGGCCGCGAGGAGCGGTCGTC
CCGACGCCTTCCGCATCCACTTCGGGGCGCTCCTTCCCGCAGGAGCGCTG
TACGCTTCCTTGACCGTGGTTCAGCTGGTGAGCGTGGGACCCAGCGACCG
GCGAGTGACGCAGGCGTGGGATAACCTCAACGCCGAGGGGGAAAGCCTCT
ACAGCGTGCAGACCAAGGTCGGGACGATGCTCATCGTCAGCGGGGTGCTC
AGCGTGGTCACCTTCGCCCTGGTGGTGTGCGCGGCGGTGGCCTCGCGGGC
GGCGCGGAACGCGCTGCTGCACCTGCCGGAGAGCAGCCCGCACCGGCACC
GCAGGCAGGGGAAGCTGTCCCGCGGGGAGAGGCTGGCGGTCGCGTGGGCG
CTAGCCCTCGCCGCCACCTCGACCTTCATCGACGGGTCCTTCGCGGTGTT
CAGCGCGTGGCTGGCGCGCGACAGGGAGCAGGCCGGGGTGTGGCTGCTGG
CGATCTGGGAAGGGATGGGCCGCGGGGACGGTCGATACGTCGACGGGGAC
ACGTTCATCGTCTCCACGGCGATCATCGTCGCGACGATCGTCGGCCCCGG
GGCGATGCTCTACGCGTGGGCCGTCTACTGTCGGAAGGGGTACCGGTTCT
CGGTGGGAATCCTGGTGTGCGCGGCCTCGCTCCACACTCAGCTGCTGAGA
TACGTCACCTCGGCGGACTCCTCGGAGTCGAGTGCCGAGCCCGGCAGCAA
GGCGTTCTTCATCGCCGCGAGCGTCGTCCTGGCGCTGCTGCAGGTGGCCG
GCGCCCTCGCCGTCCTAATCTTCAACGTCGGGAGGATGACCAAGAGGGTC
CACGCCGCCGAGGTGCACTACCGAGCCTTGCTGCTGGAGCACGGCCGACT
CTCCGACAAAATCGAGACCAGAGACGAAGGCGATGGCGGCGAAGGCGCTG
TTGCAGGCCCGGAACAACGAGGAGGCGCTTTGCGGAAGCGGAAGAAGGAC
GGCGATGGGACTGCCGCTACACTTGGCGTGACGCGGCGGGGGACCCGCAG
CACGTAG
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