mRNA_Ecto-sp13_S_contig1102.903.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1102.903.1
Unique NamemRNA_Ecto-sp13_S_contig1102.903.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1102.903.1 vs. uniprot
Match: D8LG15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG15_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.230e-16
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 2 
Query:  551 MVVPPVAVEREKEFIERLVRKVKEEDMEARERARMQDERVVAQRQSMRVK 700
            MVVPPVAVEREKEFIERL+RKVKEED+EARERARMQDERVVAQR+SMRVK
Sbjct:    1 MVVPPVAVEREKEFIERLLRKVKEEDVEARERARMQDERVVAQRESMRVK 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1102.903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG15_ECTSI1.230e-1694.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1102contigEcto-sp13_S_contig1102:10237..13258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1730
Hectar predicted targeting categoryother localisation
Exons4
Cds size873
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1102.903.1prot_Ecto-sp13_S_contig1102.903.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1102 10430..12594 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462571.137812-UTR-Ecto-sp13_S_contig1102:10236..104291681462571.137812-UTR-Ecto-sp13_S_contig1102:10236..10429Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1102 10237..10429 +
1681462571.1913788-UTR-Ecto-sp13_S_contig1102:12594..132581681462571.1913788-UTR-Ecto-sp13_S_contig1102:12594..13258Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1102 12595..13258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462571.147836-CDS-Ecto-sp13_S_contig1102:10429..104931681462571.147836-CDS-Ecto-sp13_S_contig1102:10429..10493Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1102 10430..10493 +
1681462571.1557543-CDS-Ecto-sp13_S_contig1102:11174..116171681462571.1557543-CDS-Ecto-sp13_S_contig1102:11174..11617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1102 11175..11617 +
1681462571.1636298-CDS-Ecto-sp13_S_contig1102:11903..121631681462571.1636298-CDS-Ecto-sp13_S_contig1102:11903..12163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1102 11904..12163 +
1681462571.1787143-CDS-Ecto-sp13_S_contig1102:12488..125941681462571.1787143-CDS-Ecto-sp13_S_contig1102:12488..12594Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1102 12489..12594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1102.903.1

>prot_Ecto-sp13_S_contig1102.903.1 ID=prot_Ecto-sp13_S_contig1102.903.1|Name=mRNA_Ecto-sp13_S_contig1102.903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=291bp
MSMKLRTVDVRSMAAAIRREAEHARVVEIRKREEDRRARHNLRRRAIKKR
QLMDAFQRRRAQNFLKEDEVTGCTRAAPPLPPPPPPSRRGRTHRHRYADA
PRDGYIWSDLRRTPKARLAMVVPPVAVEREKEFIERLVRKVKEEDMEARE
RARMQDERVVAQRQSMRVKVALNKVQRSLSMGALSKRPGTGNKQRVKEIV
QTKEHVQYIGAEVHGPVPFTEEEGGGNTRRRNLRRSVLSQRHEELARPRK
SHGIFRSFVKSGSTDLVGLLHSNPALKEILKWRFEDQPIC*
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mRNA from alignment at Ecto-sp13_S_contig1102:10237..13258+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1102.903.1 ID=mRNA_Ecto-sp13_S_contig1102.903.1|Name=mRNA_Ecto-sp13_S_contig1102.903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3022bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1102:10237..13258+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAAATTTTGAGGTCACGCGAGGATGCAGACGTCCGTACATAGCTTGAG
AAAGAGTATCAATACCTAGCAGTTTTATTTCAGAGAGGCGGAGTGCACCA
CACGCGGAGGGCGATCGAGAAGTCGAGACGTCAAGACGCCGAGCGACACA
TACATTCGTTCGTCGTGTTGTTTTTTGTTTGCAGGACAAGGTCATGAGCA
TGAAGCTCCGAACGGTAGACGTCAGAAGCATGGCGGCAGCGATCCGGAGG
GAGGCTGGTAAGAGGAGGGGAAACTGCTCGAGAGTTATGCTCAACCAAGA
CGCTCTACAAGTAAACATCCAATTCCACCCTGGTACATACAGCCGTTCGA
TTCTCTCGATGCGGGCTTCCCATACGTGGGTCACTGCCGCCTGCATAAAA
TGAACGTCCTTTCCTTTTTGTCCCCGAGACGTTTGGCGCGTCTCTCGCGG
GGGAAACCTCATGAAGGTGGTTGCGAAGTCTAATCAAACTAGTTGTCACA
CCCCCGCCGAACGGCGGCGCCGAACGGCGGATTAGTGCACACGAGTCATC
ACACAGCCTGAACTCATCGCGCTTTCAATTACAGGATGTTACTGTTCCCA
CACGCCCAACATACTGCCCACCGGGCGCGCTAGACTATACGTACACGAAA
AGTTTTGTTTGTTCTTGGCACCTACATTCATATCTACACAACTCAGGCAC
GCGGAATGGCTCAGCAAGACTATTTTGCGATGGAATGGAAGGGCATGGTC
TTGCAGCATCGTGCACAATGTGTGCAACACTTTATTCAAGACTCCACAAT
CATATGAGAATGCCCCACCCCTCCAACTCATCCTTTGGTACATAACGCGC
ATGCACGTCTATCGGCGTGTTTGAAAGGTCTTGACTGTGATGTATTGCCC
AAGTTTTGTGACCTGCTTTTTGTGGGTTTTATTGACAGAGCACGCCCGGG
TGGTGGAGATTCGAAAGAGGGAAGAGGATCGAAGAGCTCGCCATAACTTG
CGCCGTCGGGCAATCAAGAAGAGGCAGCTAATGGACGCGTTTCAGCGGCG
CCGGGCTCAAAACTTCCTCAAGGAGGACGAGGTTACGGGATGCACGCGTG
CGGCACCACCCCTACCACCGCCACCACCGCCGTCACGACGAGGTCGAACG
CATCGTCATCGCTACGCCGATGCCCCGAGAGACGGGTATATTTGGTCCGA
TCTCCGCCGTACACCAAAGGCACGCTTGGCGATGGTCGTGCCGCCTGTCG
CAGTGGAGCGGGAGAAGGAGTTTATCGAGCGGCTGGTGAGGAAGGTGAAA
GAGGAAGATATGGAGGCAAGGGAGCGAGCGAGGATGCAGGACGAGCGGGT
AGTGGCTCAGCGGCAAAGCATGCGGGTGAAAGTGAGGCTGGGAGTGCTTA
GACCGTCAAGTCTGCGTCTGGTTTACAACCTATGGCTTTCAACAAACGGT
ATCGCTGTACTATGGCTACACCACGTAGCCGGGAGGCAACAAGGCGGTGT
CTATGTTAAGCTGGCATACCATCTCGAAAAGCACAAGGCATGCACAATGG
ACATTTCTACCGCCAAAGTATGAGGTGTTGTCGTGTTCCCGAAGAGATTG
TCCCTGCTGATACAGGACATTTCCCAGATTCACGTGTGTATGTCTTGTTG
GTACTTCGTGTTGGCAGGTAGCACTCAACAAGGTACAGCGCTCGCTAAGC
ATGGGGGCACTATCGAAACGGCCAGGCACGGGGAATAAACAGCGGGTCAA
GGAGATTGTACAGACGAAAGAACATGTTCAATACATTGGCGCTGAAGTCC
ATGGTCCAGTCCCATTCACGGAGGAAGAAGGAGGAGGGAACACACGACGT
AGGAACTTACGGCGCAGTGTTCTTTCGCAGAGACACGAAGAGCTAGCTCG
CCCGAGGAAATCGCACGGAATATTCAGGTGCAAAGTCCATTTTTTCCACC
CGCAAACGACGATATTGTCGAGACACTTCACGCTTCATCGTTTCTGTGAT
GCTGCCAGTTATCCATGTTATTGTTACGTCACCGTCAGTAAAAGGGAGAG
ATATGGAATACCAACCCGTTATAAGGTGATGGCAAGTTCTCCTTGCCTGA
CGTTGACAATTAGTTTGCGGCTTTGAGGTCAATGTTTCATTTTTCAACCT
TGTCCGCAGCTCTCCTCCAAATAACGCTGTAGAGCAAGAGATGGAATTCT
CAACCACCCATTTCACCATCGACGCCCGATGCTTCTCAACATTGGGTCGC
AGGTCGTTCGTCAAGTCGGGAAGTACGGACTTGGTTGGCCTCCTTCACTC
TAACCCTGCGCTGAAGGAAATTCTAAAGTGGCGTTTCGAAGATCAGCCGA
TTTGCTGACATCGCGGGCCAGGGTGCCGAACCAGGCTGGATTCACGATGC
TTATCTCTGTGTGCCCGCGCCACAGCAGCGAACCCCGAGACAGGGTGATG
AAAGCTATACAGAGCGCTTCAGCCAAGCTACGCGCAGACAAAGGGGTGGA
GACGTCAAGAACATGCTTTGGTGCACCAGTTCATCGCGTGCGTGCGTGAT
GCTACGCGTGATGCGCTCGGAAGCGGTCTTCAAAACGTTGTTCGAAAAGT
CCCTGCCTGCTGTGTTGGGTATGCATGCTGGATCGGTGACGTTCGAGTGT
ATCGCGGAATCGACAAGTCCATGTTTGCACGCACGACAGCGGACTCAGAG
GAAAAGGAGGCGGCTGGCATCCTGTCCACAGGGCGCGGTGACCTGAAACA
AAGTTTATGGAATGGTATGGACGGGACGGAGATACCCAACAACGGCTTCG
GGAATCCATATACGTGTGGAAATCAGGATACGAGTGTCTTCTTAGAGGTA
GTGATGCACATGCGACCCGCAAAGATCGTCGGACGACATCAACAAAGTTC
TACGTCCGAAGACATTTGCCAGGAAAGATTCACAGAATACCGTGACAATT
CATGTGACTCTCGGAGATGGGGAGATGGCGGCGAAAGCGCCCGACACACC
TCACTCTCACCCCTTCCACCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1102:10237..13258+

>mRNA_Ecto-sp13_S_contig1102.903.1 ID=mRNA_Ecto-sp13_S_contig1102.903.1|Name=mRNA_Ecto-sp13_S_contig1102.903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1102:10237..13258+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCATGAAGCTCCGAACGGTAGACGTCAGAAGCATGGCGGCAGCGAT
CCGGAGGGAGGCTGAGCACGCCCGGGTGGTGGAGATTCGAAAGAGGGAAG
AGGATCGAAGAGCTCGCCATAACTTGCGCCGTCGGGCAATCAAGAAGAGG
CAGCTAATGGACGCGTTTCAGCGGCGCCGGGCTCAAAACTTCCTCAAGGA
GGACGAGGTTACGGGATGCACGCGTGCGGCACCACCCCTACCACCGCCAC
CACCGCCGTCACGACGAGGTCGAACGCATCGTCATCGCTACGCCGATGCC
CCGAGAGACGGGTATATTTGGTCCGATCTCCGCCGTACACCAAAGGCACG
CTTGGCGATGGTCGTGCCGCCTGTCGCAGTGGAGCGGGAGAAGGAGTTTA
TCGAGCGGCTGGTGAGGAAGGTGAAAGAGGAAGATATGGAGGCAAGGGAG
CGAGCGAGGATGCAGGACGAGCGGGTAGTGGCTCAGCGGCAAAGCATGCG
GGTGAAAGTAGCACTCAACAAGGTACAGCGCTCGCTAAGCATGGGGGCAC
TATCGAAACGGCCAGGCACGGGGAATAAACAGCGGGTCAAGGAGATTGTA
CAGACGAAAGAACATGTTCAATACATTGGCGCTGAAGTCCATGGTCCAGT
CCCATTCACGGAGGAAGAAGGAGGAGGGAACACACGACGTAGGAACTTAC
GGCGCAGTGTTCTTTCGCAGAGACACGAAGAGCTAGCTCGCCCGAGGAAA
TCGCACGGAATATTCAGGTCGTTCGTCAAGTCGGGAAGTACGGACTTGGT
TGGCCTCCTTCACTCTAACCCTGCGCTGAAGGAAATTCTAAAGTGGCGTT
TCGAAGATCAGCCGATTTGCTGA
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