mRNA_Ecto-sp13_S_contig11017.898.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11017.898.1
Unique NamemRNA_Ecto-sp13_S_contig11017.898.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11017.898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11017contigEcto-sp13_S_contig11017:972..2595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size287
Hectar predicted targeting categoryother localisation
Exons2
Cds size225
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462570.7908041-UTR-Ecto-sp13_S_contig11017:971..10241681462570.7908041-UTR-Ecto-sp13_S_contig11017:971..1024Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11017 972..1024 -
1681462570.8212311-UTR-Ecto-sp13_S_contig11017:2586..25951681462570.8212311-UTR-Ecto-sp13_S_contig11017:2586..2595Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11017 2587..2595 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462570.8012831-CDS-Ecto-sp13_S_contig11017:1024..11911681462570.8012831-CDS-Ecto-sp13_S_contig11017:1024..1191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11017 1025..1191 -
1681462570.8112483-CDS-Ecto-sp13_S_contig11017:2528..25861681462570.8112483-CDS-Ecto-sp13_S_contig11017:2528..2586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11017 2529..2586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11017.898.1prot_Ecto-sp13_S_contig11017.898.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11017 1025..2586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11017.898.1

>prot_Ecto-sp13_S_contig11017.898.1 ID=prot_Ecto-sp13_S_contig11017.898.1|Name=mRNA_Ecto-sp13_S_contig11017.898.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
MATGTQLRLGGVQVFAGCCGLPRTTAIGCVQAFPSARLAGATRAQGNGSY
AIFQDGPEVDPKAPNMRNYFDEGS*
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mRNA from alignment at Ecto-sp13_S_contig11017:972..2595-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11017.898.1 ID=mRNA_Ecto-sp13_S_contig11017.898.1|Name=mRNA_Ecto-sp13_S_contig11017.898.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11017:972..2595- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCATCCACATGGCGACGGGCACGCAGCTACGGCTTGGGGGTGTACAGGT
GTTTGCCGGGTGCTGCGGTGAGTGGTGAGCAAGGAGTGATGTTGGGTGGG
GGCTGGGAGCGGGCGTGTTGTTACTGTTATCCGTATCGGACTGAGTGTTG
GTGTGCGAGCGAGGCTTGTGTGACTTGTGGCAATTTTCGGAGATGCAAGT
GATCTGTTCACTCCTGTTGTTTGTTTGAGAGTTGGGGGGAGGCAGGGGGA
CAGAACTGCACGCCGTAGTCTTTTGTGTCTGTTTCTGGTCCTGTAAGGAA
CTTTGAGCGCTAGGTACAAACGAGTACTCGTACGTGCCTATTTGCTTGGC
CATCCGGCGAGAGTGTACGGGTGAGAGACGGCTATAAACCAAATAGCCTG
AAACGTGTTGTTTATTGTGTTGCGTTTATTCTACAATACAATGGTCTGGC
AATTTGGGGAAAGACAAAACGCACCTGTTGTTTACCAAAACATGAGCAAA
ATTTGCCAGGTGGTTGAGGGAGGTGGCAGTCGCTACGGCGTACAACACCG
CGCTTTCGGAGGGGGGCCTTTTGATCCGCGTCTCGTGCCTTCTTCTTTGA
CGGAGCTGTCTGTGTAGCTGACAAGAAGAGTCACAGGGAGAACGGGCAGA
CCTTAGGTTAGTGTTTCATGGGGCTATATGTAGACCCTGAAAAGCTGATG
AGTTCCAATGGGGCTACTTGTGGTTGAGCGAAATGATGATCGTGAAGTGT
TTACGGTGGTACGGAGTCTTTGTTGAGTTTTTTTTTGTATTGGCTGCCAA
GAGAAGAGGAGTGTCGGCTCGGTGGTGCTTTGTGTAAGATTGGACGGACA
GGAGCAGCTGTTATCGAGAGAGGGGATGATCGGGGACCGGCGTGGTGTTC
GTCATGTTGGGTGTGGCATAGCCAGTTGTTGAGTAGAATCTACGGAAAGG
GGGCGACTGGGTGGTTACGCGTAGGCGTCGCCAGAAAGCGTATGCGAGAA
TGTAGGGGAACGTTCGACTGGAGGGAGATGTATTCATGTTTAGGAGCATA
AAAAAGGGAGAGACGGGTCGATGTTCCACATATCGAAGGCGGGTTGTTGT
GGGTGTGTTTCGCTGCCGGATGGTAAGTTAGTGGATGAAGGGAGGGCGGA
GGCAATGTTGCTGGTTGGTTTGTTGGTGGAAGAACGAAGTGAAAGTGCAG
TCGGTTGCATGAACGAATGTTGAAGAGCAGAGAAAATACGTCAGACGAAG
AACGCCCAAACCAGAAGGATCCCGACCTCTCTTCCCCACTCACCATGTCT
TCTTCGTTTGGTATCAGAGAAGGGTCTAGCGACGAGTAGAGCGGCAGTTC
GACTACAAGCCACGATCTTTCAGCAGGACTGCTCGACGTGTCCGTTTCCT
TCAGGCCTCCCGCGGACGACCGCGATAGGTTGCGTGCAAGCGTTCCCGTC
AGCCCGACTGGCGGGAGCCACCAGAGCTCAGGGCAACGGTTCGTACGCAA
TCTTTCAGGACGGTCCGGAGGTAGACCCGAAGGCACCCAATATGCGAAAT
TATTTTGACGAAGGATCGTGACCAGTCGAATTGATGCGGCATTCTTCGCG
ACATCTCCGGCTGCCGAACGAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11017:972..2595-

>mRNA_Ecto-sp13_S_contig11017.898.1 ID=mRNA_Ecto-sp13_S_contig11017.898.1|Name=mRNA_Ecto-sp13_S_contig11017.898.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11017:972..2595- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACGGGCACGCAGCTACGGCTTGGGGGTGTACAGGTGTTTGCCGG
GTGCTGCGGCCTCCCGCGGACGACCGCGATAGGTTGCGTGCAAGCGTTCC
CGTCAGCCCGACTGGCGGGAGCCACCAGAGCTCAGGGCAACGGTTCGTAC
GCAATCTTTCAGGACGGTCCGGAGGTAGACCCGAAGGCACCCAATATGCG
AAATTATTTTGACGAAGGATCGTGA
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