mRNA_Ecto-sp13_S_contig11012.897.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11012.897.1
Unique NamemRNA_Ecto-sp13_S_contig11012.897.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11012.897.1 vs. uniprot
Match: D7FSU7_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU7_ECTSI)

HSP 1 Score: 598 bits (1541), Expect = 1.790e-200
Identity = 449/632 (71.04%), Postives = 458/632 (72.47%), Query Frame = 1 
Query:    1 SLPSCTSAVIPGGTHALIYDKGSMEEVFTAAQKGVQEAR---------STARFXXXXXXXXXXXXXXXXXXPRDDXXXXXXXXXXXXXXXXXXMMSPRSTKKADQATLTEATAVQEGQPAGKKEDPLDLRKMVAKAISRNASGTPDSSVHSLASAANNSRXXXXXXXXXXXXXXXXXXXXXXX------VVGMGSGHGSSGHSLSWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRHGSESAPPPIPENGELVGALDGSGGSGSSSPAGLLGEIGKQFSLALNGSFGHEGSDSGEASMRRPPPPPVSKPREAGTTAEKGLQDTASHSEKSGVGRMAEGLLKQLDRAVSSISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGSVVGGGSRRPGGLVLPWSQQDMDQGRDSGGGRGEDEATNLDADASGDNRFGRAFTGAGAGGGTPHANDSGRDESMGPAERAFAAAFGSGGGRGGAVCSTPRATSHAKLSFGTPVTERVVSTSTSASVYGTPSRVTPXXXXXXXXPRGFAVDTARPSAGSSVGGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAAMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW 1851
            SLPSCTSAVIPGGTHAL+YDKGSMEEVFTAAQKGVQEAR         STARF                  PRDD       XXXXXXXX   MMSPRSTKK DQAT +E TAVQEGQ AGKKEDPL+LRKMVAKAISRNASGTPDSS HSLASAA    XXXXXXXXXXXXXXXXXXXXXXX      VVGMGS           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     SESAPPPIPENGELVG LD SGGSGSSSPAGLLGEIGKQFSLALNGSFGHEGSD+GEASM       V+KPR+AG TAEKGLQDT+SHSEK+G                                                                             DMDQGRD G    EDEATNLDADASGDNRFGRAFTGAGAGGGTPH ND GRDESMGPAERAFAAAFG GG    AVCSTPR TSH KLSFGTPVTERVVSTSTSASVYGTPSRVTP XXXXXXX RGFA DTA PSAGS+ GGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAAMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW
Sbjct:  453 SLPSCTSAVIPGGTHALVYDKGSMEEVFTAAQKGVQEARVSKEQWKRKSTARFTARRLGSQLSYVASNVFSPRDDTSPSAAAXXXXXXXXTAGMMSPRSTKKVDQATPSEVTAVQEGQAAGKKEDPLNLRKMVAKAISRNASGTPDSSAHSLASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVGMGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSESAPPPIPENGELVGTLDSSGGSGSSSPAGLLGEIGKQFSLALNGSFGHEGSDTGEASMPPXXXXXVAKPRDAGATAEKGLQDTSSHSEKTG-----------------------------------------------------------------------------DMDQGRDGGXXXXEDEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGGRDESMGPAERAFAAAFGGGG----AVCSTPRVTSHPKLSFGTPVTERVVSTSTSASVYGTPSRVTPSXXXXXXXLRGFAADTAGPSAGSTAGGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAAMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW 1003
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BLAST of mRNA_Ecto-sp13_S_contig11012.897.1 vs. uniprot
Match: D7G440_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G440_ECTSI)

HSP 1 Score: 565 bits (1456), Expect = 9.620e-194
Identity = 339/392 (86.48%), Postives = 347/392 (88.52%), Query Frame = 1 
Query:  682 SSRHGSESAPPPIPENGELVGALDGSGGSGSSSPAGLLGEIGKQFSLALNGSFGHEGSDSGEASMRRPPPPPVSKPREAGTTAEKGLQDTASHSEKSGVGRMAEGLLKQLDRAVSSISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGSVVGGGSRRPGGLVLPWSQQDMDQGRDSGGGRGEDEATNLDADASGDNRFGRAFTGAGAGGGTPHANDSGRDESMGPAERAFAAAFGSGGGRGG--AVCSTPRATSHAKLSFGTPVTERVVSTSTSASVYGTPSRVTPXXXXXXXXPRGFAVDTARPSAGSSVGGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAAMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW 1851
            SSRHGSESAPPPIPENGELVGALDGSGGSGSSSPAGLLGEIGKQFSLALN SF  EGSD+GEAS    PPPPVSKPR+  TTAEKGL+DT+SHSEK+GVGRMAEGLLKQ+DRAV SISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGS VGGGSRRP GLVLPWSQQDMDQGRD G     DEATNLDADASGDNRFGRAFTGAGAGGGTPH ND G DESMGPAERAFAAAFG         AVCSTPR TSH KLSFGTPVTERVVSTSTSAS+YGTPSRVTP         RGFA DTA PSAGS+ GGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEA MANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW
Sbjct:  172 SSRHGSESAPPPIPENGELVGALDGSGGSGSSSPAGLLGEIGKQFSLALNRSFNLEGSDTGEASK---PPPPVSKPRDPRTTAEKGLEDTSSHSEKTGVGRMAEGLLKQVDRAVPSISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGSGVGGGSRRPSGLVLPWSQQDMDQGRDGGXXXXXDEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGGHDESMGPAERAFAAAFGXXXXXXXXXAVCSTPRVTSHPKLSFGTPVTERVVSTSTSASIYGTPSRVTPSASVFGTTLRGFAADTAGPSAGSTAGGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAGMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW 560
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11012.897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSU7_ECTSI1.790e-20071.04FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
D7G440_ECTSI9.620e-19486.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11012contigEcto-sp13_S_contig11012:2923..5597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score607.4
Seed ortholog evalue7.2e-171
Seed eggNOG ortholog2880.D7FSU7
Model size1854
KEGG koko:K12492
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
Cds size1854
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462570.7358665-CDS-Ecto-sp13_S_contig11012:2922..44881681462570.7358665-CDS-Ecto-sp13_S_contig11012:2922..4488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11012 2923..4488 -
1681462570.7479267-CDS-Ecto-sp13_S_contig11012:4762..49331681462570.7479267-CDS-Ecto-sp13_S_contig11012:4762..4933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11012 4763..4933 -
1681462570.7603216-CDS-Ecto-sp13_S_contig11012:5480..55971681462570.7603216-CDS-Ecto-sp13_S_contig11012:5480..5597Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11012 5481..5597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11012.897.1prot_Ecto-sp13_S_contig11012.897.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11012 2923..5597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11012.897.1

>prot_Ecto-sp13_S_contig11012.897.1 ID=prot_Ecto-sp13_S_contig11012.897.1|Name=mRNA_Ecto-sp13_S_contig11012.897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=618bp
SLPSCTSAVIPGGTHALIYDKGSMEEVFTAAQKGVQEARSTARFAARRLS
SQLSYVASNVFSPRDDTSPTAAATAAAAAGATAGMMSPRSTKKADQATLT
EATAVQEGQPAGKKEDPLDLRKMVAKAISRNASGTPDSSVHSLASAANNS
RHNAGTNGGSSGHGSGSGHGSGHGVVGMGSGHGSSGHSLSWHSNGAGGGG
SGSGHGTAGRRLSALSSSSTGSRHGPGSSRHGSESAPPPIPENGELVGAL
DGSGGSGSSSPAGLLGEIGKQFSLALNGSFGHEGSDSGEASMRRPPPPPV
SKPREAGTTAEKGLQDTASHSEKSGVGRMAEGLLKQLDRAVSSISVGDGS
GHGSGWGGSVNGAGGSAQGSAHGSVASVGALGSVVGGGSRRPGGLVLPWS
QQDMDQGRDSGGGRGEDEATNLDADASGDNRFGRAFTGAGAGGGTPHAND
SGRDESMGPAERAFAAAFGSGGGRGGAVCSTPRATSHAKLSFGTPVTERV
VSTSTSASVYGTPSRVTPSASVFGTPPRGFAVDTARPSAGSSVGGSGHGS
AGPVRKSSFAIEGVVAVDKVAGYEAAMANWPAGKVEGNPAWEEWSSAKKL
VCHLVTAGCLAVIVLTW*
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mRNA from alignment at Ecto-sp13_S_contig11012:2923..5597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11012.897.1 ID=mRNA_Ecto-sp13_S_contig11012.897.1|Name=mRNA_Ecto-sp13_S_contig11012.897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11012:2923..5597- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCTACCGTCCTGCACGAGCGCGGTCATACCTGGGGGTACCCACGCGCT
CATTTACGACAAGGGGAGCATGGAGGAGGTCTTCACGGCCGCGCAGAAGG
GAGTTCAGGAGGCCCGGGTGAGCAAGAAGCAGTAAAAGCATTAGGTTTAG
GTTTCAATTTGGTGGGCATGGGTGTTTCAGAAGGGTGTGCCCTTTCTTGG
GTAGTTGGCCTGTGACCGTGGAAGGCGTCCGCGTTACTTAGACCGATTCG
GACGTGGAGAGGTAAACTTGGCAAAACCCGGGACCGTTTTTTATACGGAA
AGAGAACAGCATCAACAATAGGACATGTGCGGAACGTCCCACGACCGATT
GAGAGAGAGACAAAGAGCGCTGGAATTGGTATAGAACACCTTGTTCTCGT
ATTTGATACATTTCTCATGGGTCTGCAGAGGAGCGTTTGATCCGGTCTTT
TTCGTGCCCGTGCTGTTCTGGCAACAACTTGTTTCCGAAACCGACCGATT
ATTGCGTCGTGTTCGACCATTCCAATAGTGACTCATTGTGCTTTTTGTGG
CTCAAGGATCAATGAGGGGGGAACGTCAACGCTTCGCCATTCGCCCCGAG
CCCGGCACCTCTCCTAAACTCTTTCCTCTCCTCTTTCTGTAACCACGTTC
CCCTGCCTGTTTAGTCTACCGCCCGTTTCGCGGCCCGGCGTCTAAGCAGC
CAGCTCTCGTACGTGGCTTCGAACGTTTTCTCGCCGCGGGATGACACGTC
CCCTACGGCGGCGGCTACGGCGGCGGCGGCCGCGGGCGCGACGGCGGGCA
TGATGAGCCCTCGCTCCACCAAGAAGGCGGATCAGGTACGGCAGGGGATT
GATGTACCCCCCACCTTTTGGTGGTCGAGCAGGTTGTGTTGTGCGGGGTC
GACAACCCTCACTCCGCGCAAAGGGGATGATCGCATCACGTTGTGTTAAA
TAGTCAAGCAACCTCGAGGCAGTTGGTGTCGACGGACCTGATCGTGGTCA
GGCATGGACTGTGGGCGAACGCGGTTACCGCAGATGAGAGGCCACCAGAA
AAAAAAATGTGCTCCCGTCTCATCTGGCTGACCGCCCCTCGTAAATCGTG
TTGACGCAGGCGACGCTGACCGAAGCGACGGCGGTGCAGGAAGGGCAACC
TGCTGGCAAGAAGGAAGACCCGTTAGACCTCCGAAAAATGGTCGCGAAGG
CTATCTCGAGGAATGCCAGCGGCACCCCTGATTCCTCCGTGCACTCGCTC
GCGTCCGCAGCCAACAACAGCCGCCACAACGCGGGGACGAACGGCGGCAG
CAGCGGGCATGGCAGCGGCAGCGGGCATGGTAGCGGACACGGCGTCGTGG
GAATGGGGAGCGGCCACGGAAGCAGTGGGCACAGCCTCAGCTGGCACAGC
AACGGCGCGGGCGGGGGGGGCAGCGGCAGCGGCCACGGAACCGCGGGTCG
GCGCCTGTCCGCCCTGTCCTCGTCCAGCACCGGTAGCCGGCACGGTCCCG
GTAGCAGCCGTCATGGGTCGGAGTCGGCGCCGCCGCCTATCCCCGAGAAC
GGGGAGCTTGTCGGCGCCCTGGATGGTTCCGGGGGGAGTGGCAGCAGCAG
CCCCGCGGGACTGCTCGGCGAAATCGGGAAGCAGTTCAGCCTTGCTCTCA
ACGGGTCTTTCGGCCACGAGGGGAGCGATAGCGGGGAGGCTTCGATGCGG
CGGCCGCCGCCGCCGCCGGTGTCAAAACCGAGAGAGGCGGGGACGACGGC
GGAGAAAGGCCTTCAGGACACTGCGTCTCATTCGGAGAAGAGCGGTGTGG
GTCGAATGGCAGAGGGGTTGTTGAAGCAGCTCGACCGAGCGGTGTCCAGC
ATATCTGTTGGGGACGGCAGCGGCCACGGATCAGGATGGGGTGGGAGCGT
CAACGGTGCCGGTGGAAGCGCCCAAGGGAGCGCGCACGGTAGCGTTGCGA
GCGTTGGGGCGCTGGGCAGCGTCGTCGGTGGCGGCTCGCGGAGACCTGGT
GGACTCGTTTTGCCCTGGTCTCAGCAGGACATGGATCAGGGGCGAGATAG
CGGTGGTGGCCGCGGGGAAGACGAAGCTACCAATCTCGACGCCGACGCGA
GTGGCGACAACCGCTTTGGGCGTGCCTTCACCGGTGCCGGTGCCGGCGGT
GGCACGCCGCACGCGAACGACAGCGGGCGCGACGAATCGATGGGGCCGGC
GGAACGCGCGTTTGCGGCCGCCTTTGGCAGCGGCGGCGGCAGGGGCGGTG
CGGTCTGCAGCACTCCCCGCGCGACCTCACACGCGAAGCTGTCGTTCGGC
ACGCCCGTGACGGAACGCGTTGTCTCCACTTCAACCAGCGCTTCCGTCTA
CGGGACGCCGAGTCGGGTCACGCCGAGCGCGTCCGTCTTCGGCACGCCTC
CCAGGGGTTTCGCCGTGGACACTGCCAGGCCCAGCGCCGGCAGCAGCGTC
GGCGGTAGCGGGCACGGCTCCGCAGGCCCCGTCCGCAAGAGCTCGTTCGC
GATCGAGGGTGTGGTGGCGGTGGACAAGGTGGCGGGGTACGAGGCGGCGA
TGGCGAATTGGCCTGCGGGGAAGGTGGAGGGGAACCCCGCGTGGGAGGAG
TGGAGCTCGGCGAAGAAGTTGGTGTGCCACCTTGTCACCGCGGGCTGTTT
AGCCGTGATCGTTCTCACATGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11012:2923..5597-

>mRNA_Ecto-sp13_S_contig11012.897.1 ID=mRNA_Ecto-sp13_S_contig11012.897.1|Name=mRNA_Ecto-sp13_S_contig11012.897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1854bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11012:2923..5597- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCTACCGTCCTGCACGAGCGCGGTCATACCTGGGGGTACCCACGCGCT
CATTTACGACAAGGGGAGCATGGAGGAGGTCTTCACGGCCGCGCAGAAGG
GAGTTCAGGAGGCCCGGTCTACCGCCCGTTTCGCGGCCCGGCGTCTAAGC
AGCCAGCTCTCGTACGTGGCTTCGAACGTTTTCTCGCCGCGGGATGACAC
GTCCCCTACGGCGGCGGCTACGGCGGCGGCGGCCGCGGGCGCGACGGCGG
GCATGATGAGCCCTCGCTCCACCAAGAAGGCGGATCAGGCGACGCTGACC
GAAGCGACGGCGGTGCAGGAAGGGCAACCTGCTGGCAAGAAGGAAGACCC
GTTAGACCTCCGAAAAATGGTCGCGAAGGCTATCTCGAGGAATGCCAGCG
GCACCCCTGATTCCTCCGTGCACTCGCTCGCGTCCGCAGCCAACAACAGC
CGCCACAACGCGGGGACGAACGGCGGCAGCAGCGGGCATGGCAGCGGCAG
CGGGCATGGTAGCGGACACGGCGTCGTGGGAATGGGGAGCGGCCACGGAA
GCAGTGGGCACAGCCTCAGCTGGCACAGCAACGGCGCGGGCGGGGGGGGC
AGCGGCAGCGGCCACGGAACCGCGGGTCGGCGCCTGTCCGCCCTGTCCTC
GTCCAGCACCGGTAGCCGGCACGGTCCCGGTAGCAGCCGTCATGGGTCGG
AGTCGGCGCCGCCGCCTATCCCCGAGAACGGGGAGCTTGTCGGCGCCCTG
GATGGTTCCGGGGGGAGTGGCAGCAGCAGCCCCGCGGGACTGCTCGGCGA
AATCGGGAAGCAGTTCAGCCTTGCTCTCAACGGGTCTTTCGGCCACGAGG
GGAGCGATAGCGGGGAGGCTTCGATGCGGCGGCCGCCGCCGCCGCCGGTG
TCAAAACCGAGAGAGGCGGGGACGACGGCGGAGAAAGGCCTTCAGGACAC
TGCGTCTCATTCGGAGAAGAGCGGTGTGGGTCGAATGGCAGAGGGGTTGT
TGAAGCAGCTCGACCGAGCGGTGTCCAGCATATCTGTTGGGGACGGCAGC
GGCCACGGATCAGGATGGGGTGGGAGCGTCAACGGTGCCGGTGGAAGCGC
CCAAGGGAGCGCGCACGGTAGCGTTGCGAGCGTTGGGGCGCTGGGCAGCG
TCGTCGGTGGCGGCTCGCGGAGACCTGGTGGACTCGTTTTGCCCTGGTCT
CAGCAGGACATGGATCAGGGGCGAGATAGCGGTGGTGGCCGCGGGGAAGA
CGAAGCTACCAATCTCGACGCCGACGCGAGTGGCGACAACCGCTTTGGGC
GTGCCTTCACCGGTGCCGGTGCCGGCGGTGGCACGCCGCACGCGAACGAC
AGCGGGCGCGACGAATCGATGGGGCCGGCGGAACGCGCGTTTGCGGCCGC
CTTTGGCAGCGGCGGCGGCAGGGGCGGTGCGGTCTGCAGCACTCCCCGCG
CGACCTCACACGCGAAGCTGTCGTTCGGCACGCCCGTGACGGAACGCGTT
GTCTCCACTTCAACCAGCGCTTCCGTCTACGGGACGCCGAGTCGGGTCAC
GCCGAGCGCGTCCGTCTTCGGCACGCCTCCCAGGGGTTTCGCCGTGGACA
CTGCCAGGCCCAGCGCCGGCAGCAGCGTCGGCGGTAGCGGGCACGGCTCC
GCAGGCCCCGTCCGCAAGAGCTCGTTCGCGATCGAGGGTGTGGTGGCGGT
GGACAAGGTGGCGGGGTACGAGGCGGCGATGGCGAATTGGCCTGCGGGGA
AGGTGGAGGGGAACCCCGCGTGGGAGGAGTGGAGCTCGGCGAAGAAGTTG
GTGTGCCACCTTGTCACCGCGGGCTGTTTAGCCGTGATCGTTCTCACATG
GTGA
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