mRNA_Ecto-sp13_S_contig11010.895.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig11010.895.1
Unique Name	mRNA_Ecto-sp13_S_contig11010.895.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig11010.895.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 8.300e-99
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 1

Query:    1 LVYADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSSTMKARLQEEVRLGELAQSTRVKY 438
            LV ADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNS TMKARLQEEVRLGELAQSTRVKY
Sbjct:  132 LVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKY 277

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BLAST of mRNA_Ecto-sp13_S_contig11010.895.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 1.890e-96
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 1

Query:    1 LVYADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSSTMKARLQEEVRLGELAQSTRVKY 438
            LV ADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNS TMKARLQEEVRLGELAQSTRVKY
Sbjct:  306 LVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKY 451

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BLAST of mRNA_Ecto-sp13_S_contig11010.895.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 3.260e-96
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 1

Query:    1 LVYADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSSTMKARLQEEVRLGELAQSTRVKY 438
            LV ADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNS TMKARLQEEVRLGELAQSTRVKY
Sbjct:   23 LVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKY 168

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BLAST of mRNA_Ecto-sp13_S_contig11010.895.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 4.980e-81
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 1

Query:    1 LVYADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSSTMKARLQEE 396
            LV ADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNS TMKARLQEE
Sbjct: 1437 LVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 1568

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BLAST of mRNA_Ecto-sp13_S_contig11010.895.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 5.370e-62
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1

Query:  142 QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSSTMKARLQEEVRLGELAQSTRVKY 438
            +DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNS TMKARLQEEVRLGELAQSTRVKY
Sbjct:    8 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKY 106

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BLAST of mRNA_Ecto-sp13_S_contig11010.895.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 3.990e-61
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1

Query:  142 QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSSTMKARLQEEVRLGELAQSTRVKY 438
            +DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNS TMKARLQEEVRLGELAQSTRVKY
Sbjct:    6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKY 104

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BLAST of mRNA_Ecto-sp13_S_contig11010.895.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 4.120e-61
Identity = 100/117 (85.47%), Postives = 104/117 (88.89%), Query Frame = 1

Query:   88 SQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSSTMKARLQEEVRLGELAQSTRVKY 438
            S++  R+        T  +DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNS TMKARLQEEVRLGELAQSTRVKY
Sbjct:   54 SEKDCRQACGGDRWSTGRKDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKY 170

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BLAST of mRNA_Ecto-sp13_S_contig11010.895.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 6.640e-61
Identity = 95/100 (95.00%), Postives = 99/100 (99.00%), Query Frame = 1

Query:  139 WQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSSTMKARLQEEVRLGELAQSTRVKY 438
            WQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDL+VEPMSFDRIGNLGNSSTMK RLQEEVRLGELA++TRV+Y
Sbjct:    2 WQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRLGELARTTRVRY 101

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BLAST of mRNA_Ecto-sp13_S_contig11010.895.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.510e-59
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1

Query:  142 QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSSTMKARLQEEVRLGELAQSTRVKY 438
            +DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNS TMKARLQEEVRLGELAQSTRVKY
Sbjct:    6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKY 104

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BLAST of mRNA_Ecto-sp13_S_contig11010.895.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 2.320e-56
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1

Query:  145 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSSTMKARLQEEVRLGELAQSTRVKY 438
            DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNS TMKARLQEEVRLGELAQSTRVKY
Sbjct:  350 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKY 447

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig11010.895.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig11010.895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JUS2_9PHAE	8.300e-99	98.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFG8_9PHAE	1.890e-96	98.63	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K4U7_9PHAE	3.260e-96	98.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L976_9PHAE	4.980e-81	98.48	ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ...	[more]
A0A6H5KSF1_9PHAE	5.370e-62	97.98	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCP5_9PHAE	3.990e-61	97.98	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMH2_9PHAE	4.120e-61	85.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K214_9PHAE	6.640e-61	95.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KN08_9PHAE	1.510e-59	97.98	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5J8Y8_9PHAE	2.320e-56	98.98	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig11010	contig	Ecto-sp13_S_contig11010:3001..3438 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Metazoa
Stop	0
Start	0
Seed ortholog score	107.1
Seed ortholog evalue	7.2e-21
Seed eggNOG ortholog	400682.PAC_15726636
Model size	438
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	G-quadruplex DNA unwinding
EggNOG OGs	3A1N8@33154,3BR8V@33208,COG0507@1,KOG0987@2759
Cds size	438
COG Functional cat.	L
Best tax level	Metazoa
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462570.625048-CDS-Ecto-sp13_S_contig11010:3000..3438	1681462570.625048-CDS-Ecto-sp13_S_contig11010:3000..3438	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig11010 3001..3438 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig11010.895.1	prot_Ecto-sp13_S_contig11010.895.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig11010 3001..3438 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig11010:3001..3438-
coding sequence from alignment at Ecto-sp13_S_contig11010:3001..3438-

protein sequence of mRNA_Ecto-sp13_S_contig11010.895.1

>prot_Ecto-sp13_S_contig11010.895.1 ID=prot_Ecto-sp13_S_contig11010.895.1|Name=mRNA_Ecto-sp13_S_contig11010.895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
LVYADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDG
GTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRA
KRLVDLMVEPMSFDRIGNLGNSSTMKARLQEEVRLGELAQSTRVKY

mRNA from alignment at Ecto-sp13_S_contig11010:3001..3438-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig11010.895.1 ID=mRNA_Ecto-sp13_S_contig11010.895.1|Name=mRNA_Ecto-sp13_S_contig11010.895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11010:3001..3438- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGTGTACGCAGATGATGCGCCCCCGCCAAAGCTCCCCCTTTACGTTGT
CGTCAAGTTCGAAGGGTACTCGGGGGGGGAATGGTCGTCTCAGGAGAGGT
ATAGACGTTGTGTACCTATTTCTCCCGTCGACACCACGTGGCAGGACGGG
GGGACGCAGGTCAGGACGCAGCTGCCCCTTAGGCTCTGCTGGGCAATTAC
GATGCACAAGTCCCAGGGGCAGACTTTAGCCAAGGCCGTCATTGACTTGG
GGCCCAAGGAGGCCTGCACGGGGCTTACTTTCGTCTGTCTCAGTAGGGCG
AAGAGACTTGTGGACCTCATGGTAGAGCCCATGAGTTTCGACAGGATTGG
TAACCTTGGAAATTCGTCGACGATGAAGGCTAGGCTGCAGGAAGAGGTTA
GACTTGGGGAGTTAGCACAGAGTACGAGGGTCAAGTAC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11010:3001..3438-

>mRNA_Ecto-sp13_S_contig11010.895.1 ID=mRNA_Ecto-sp13_S_contig11010.895.1|Name=mRNA_Ecto-sp13_S_contig11010.895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11010:3001..3438- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGTGTACGCAGATGATGCGCCCCCGCCAAAGCTCCCCCTTTACGTTGT
CGTCAAGTTCGAAGGGTACTCGGGGGGGGAATGGTCGTCTCAGGAGAGGT
ATAGACGTTGTGTACCTATTTCTCCCGTCGACACCACGTGGCAGGACGGG
GGGACGCAGGTCAGGACGCAGCTGCCCCTTAGGCTCTGCTGGGCAATTAC
GATGCACAAGTCCCAGGGGCAGACTTTAGCCAAGGCCGTCATTGACTTGG
GGCCCAAGGAGGCCTGCACGGGGCTTACTTTCGTCTGTCTCAGTAGGGCG
AAGAGACTTGTGGACCTCATGGTAGAGCCCATGAGTTTCGACAGGATTGG
TAACCTTGGAAATTCGTCGACGATGAAGGCTAGGCTGCAGGAAGAGGTTA
GACTTGGGGAGTTAGCACAGAGTACGAGGGTCAAGTAC