mRNA_Ecto-sp13_S_contig110.885.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig110.885.1
Unique NamemRNA_Ecto-sp13_S_contig110.885.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig110.885.1 vs. uniprot
Match: D7FJH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH6_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 2.770e-50
Identity = 91/97 (93.81%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:  775 MSVPSTRKIQLVIAHTAEKTIEVPGFEAFMKMQHGKDALFRFLAADHALHSYYLLAKKHVQEIVMRGGKAKGACATAEPSSAPAAALKAPNDKTEDP 1065
            MSVP TRKIQLVIAHTAEKTIEVPGFEAFMKMQHG+DALFRFLAADHALHSYYLLAKKHVQEIVM+GGKAKGACA AEPSSAPAA LKAP+DKTEDP
Sbjct:    1 MSVPPTRKIQLVIAHTAEKTIEVPGFEAFMKMQHGRDALFRFLAADHALHSYYLLAKKHVQEIVMKGGKAKGACAAAEPSSAPAATLKAPSDKTEDP 97
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BLAST of mRNA_Ecto-sp13_S_contig110.885.1 vs. uniprot
Match: A0A6H5L358_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L358_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.740e-29
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:  418 LEGAMTSANERHARTLEAIQAQRASFAPTAFPPSTSVVEKNDGLPEAEPAPAPTPAXXXXXXXXXAAAAGDDVGSTTENVELESVAAFIASYAG 699
            L+ AM SAN+R+ART+EAIQAQRASFAPT  PPST VV+++DGLPEAE  PAPTP          AAAA DDVGSTTENV+LESVAAFIASYAG
Sbjct:   86 LDDAMASANKRYARTVEAIQAQRASFAPTVIPPSTLVVDEDDGLPEAESTPAPTPGAEESEKEEMAAAASDDVGSTTENVKLESVAAFIASYAG 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig110.885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJH6_ECTSI2.770e-5093.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L358_9PHAE6.740e-2972.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig110contigEcto-sp13_S_contig110:28052..31708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1654
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionSWAP/Surp
Ec32 orthologEc-04_006160.1
Cds size1311
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig110.885.1prot_Ecto-sp13_S_contig110.885.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig110 28052..31365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462569.514707-CDS-Ecto-sp13_S_contig110:28051..287481681462569.514707-CDS-Ecto-sp13_S_contig110:28051..28748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig110 28052..28748 +
1681462569.5232666-CDS-Ecto-sp13_S_contig110:29384..294701681462569.5232666-CDS-Ecto-sp13_S_contig110:29384..29470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig110 29385..29470 +
1681462569.5320034-CDS-Ecto-sp13_S_contig110:29904..299881681462569.5320034-CDS-Ecto-sp13_S_contig110:29904..29988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig110 29905..29988 +
1681462569.5427253-CDS-Ecto-sp13_S_contig110:30393..304521681462569.5427253-CDS-Ecto-sp13_S_contig110:30393..30452Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig110 30394..30452 +
1681462569.5524428-CDS-Ecto-sp13_S_contig110:30980..313651681462569.5524428-CDS-Ecto-sp13_S_contig110:30980..31365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig110 30981..31365 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462569.5623674-UTR-Ecto-sp13_S_contig110:31365..317081681462569.5623674-UTR-Ecto-sp13_S_contig110:31365..31708Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig110 31366..31708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig110.885.1

>prot_Ecto-sp13_S_contig110.885.1 ID=prot_Ecto-sp13_S_contig110.885.1|Name=mRNA_Ecto-sp13_S_contig110.885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=437bp
MDAVFEVSSGPREAVSALTGMSPFPAVAVSSSSSSEDKGPENACMSSSMS
PPAPPSSPPQPPLSPPPSSSPPPPSPPPSPLSLSPSSSSCSSSSSSSSSS
IASAASISAAAAAAAAAAAAAAASTEAAASRAASKAAAALEGAMTSANER
HARTLEAIQAQRASFAPTAFPPSTSVVEKNDGLPEAEPAPAPTPAAEESE
EEEMAAAAGDDVGSTTENVELESVAAFIASYAGEQDAAAKANRLPTKPSE
PPFLVPRGMSVPSTRKIQLVIAHTAEKTIEVPGFEAFMKMQHGKDALFRF
LAADHALHSYYLLAKKHVQEIVMRGGKAKGACATAEPSSAPAAALKAPND
KTEDPGERNGTETTEECVVNFLLQSSLLCWQVEGAPDTEVLLYNPNSVTT
TATDSSSRTWYSLVVFQPLSTRGCCRVSPMVDTIAM*
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mRNA from alignment at Ecto-sp13_S_contig110:28052..31708+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig110.885.1 ID=mRNA_Ecto-sp13_S_contig110.885.1|Name=mRNA_Ecto-sp13_S_contig110.885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig110:28052..31708+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCGGTATTCGAAGTCAGCTCCGGCCCACGAGAGGCAGTGTCAGC
GCTGACAGGCATGTCGCCTTTCCCGGCTGTAGCTGTCAGCAGCAGCAGCA
GCAGCGAGGACAAGGGCCCTGAAAACGCATGCATGTCTTCTTCAATGTCA
CCACCAGCGCCACCATCATCGCCACCACAACCACCATTATCTCCACCACC
GTCATCATCACCACCACCACCATCTCCACCACCATCACCGCTATCATTGT
CACCATCATCATCATCATGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCA
ATAGCCTCAGCAGCCTCAATATCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCTGCTGCTGCTGCCGCATCAACAGAAGCAGCAGCATCAAGGGCAGCAT
CAAAGGCAGCAGCAGCACTAGAAGGCGCAATGACGAGCGCCAACGAGAGG
CACGCCAGAACACTTGAAGCTATTCAGGCCCAAAGGGCGTCCTTTGCTCC
GACCGCTTTTCCTCCTTCGACATCGGTTGTTGAAAAAAATGATGGCCTGC
CCGAAGCAGAACCAGCACCAGCACCAACCCCAGCCGCAGAGGAATCTGAG
GAAGAAGAGATGGCTGCCGCTGCCGGTGACGACGTCGGTAGCACTACTGA
GAACGTGGAACTGGAGAGTGTCGCCGCGTTCATCGCAAGCTACGCAGGTG
TGTCCAGAACCGTTGATACTTGTCGGTATAGCCTGAAGTCGCAGCAGGAT
TACTGTGGGACAGCAGTTTGTCGGGTCGTTCCTTTTTCAGTTCATAACGT
TGACGGAGCCACAGTAGTTGCTGCTGCGGCACTGCTGGTGCCCTTGTACC
TGTTTCGTGCAGCTCGATGTTGAAGCCACATTTCTCGCTAGCTGCCATGC
AGGTGTCTAAGAACAAACCATTTCATCACAGCACCGTACTCATCTGGGGA
GGTGGCGAGCGACAAGGCCAACACCCCCATCTACAATCCTCGTAGTGAGG
AGCCACAGACGTGCCGTGCCGCCACATTATCCGGGCCGAACCTATGACTC
ATTCGAAGAGAAGCAACGAGTTTCGGGACTGGTCTACACGCCTTTACGTG
CCCACTTCCGTTGGAGAGGGAGAAAGCACACCGATACACAACATGCTGAC
GGCTGTTTAATTTGTCCCCCCCTTGTACTCCTCTCACTCCAAAACCCGAG
TTGATTCTTACTTATACCGATTACGCATGTACGCAGTGTGTTGTAGGTTA
CTAGGGGTGCAGAGGGGATAATATGGTCTTGCGGCACTCACTGTTCGTTT
CCCCTCGGAAATGGCTTCGGATGGCGTTGGCAGGAGAGCAAGACGCAGCG
GCGAAGGCAAACCGTCTTCCCACCAAGCCCTCAGAGCCCCCGTTCTTGGT
CCCGCGAGGGATGTCTGTGGTGAGTATGTCATGATGGATTGCTGTACAAC
TTTTGTTGCTGTGCCAAACGAACGCGTTGTGCCACATGGAGGGATCGAAT
TTTTTCGATCAAGACAGTAGTGATTTGTATGGTCGCTGGCGGCGCAATTT
CTCTTTCTCTAAATCTTGTAGCTCTATTGTTGATGCCCTTCGCCTGAAAT
TTGTCTCACGTACAGATAGTGATTCTACGCATAGCTTGTCCGTTTCGTGG
CTCTCTTATTGACACTTCGGAGATCTGCTTCCTTACCGTGATTTAGAAAC
GTCTTTGTTTGTAGAAAGTGCTGTCGTGAGTAGGTACGCTGCTTCGAAAG
CAACCGATGGCCGTCTCAAATAGGCGGCTCTTTCGTAAACTAATAATACA
AATGGCAATTATTTATGTGAAAACATACATTGCCCTACGTATTTGATTTG
CAGCCGTCCACGAGGAAGATTCAGCTGGTGATTGCCCACACGGCGGAAAA
GACGATAGAAGTCCCGGGATTCGAAGCATTCATGAAGGCGAGTGTCCCAC
CAAGCGAAACATATTCATGCTCACGACTCTGTTGGGCTGCTAGCTGGTAG
ACGAATCATACACCGAAACCTACGTTAGACATTGAGTGGATGAACCCAAG
TGGATGTGAGCCTGTTGTTTCGATTTTCTGAGACGGTTTCCCTATCGCCA
CCACCTTTTGGCGCTTGTGGCGGTTGAATCGGTTCTCTCCGGGCCACTTG
AGTGTTGAGTGCATTACATACATATCCCATCAATGGCGTCGTCGCGAAAG
TGTGATTGCACAGCACGCCAGCTGCGACCGCACCCAGAGTGGTTGGACTG
CCGTAATCCCCCGAAACCAACTCTGCCTTGCCTGTGCACGACTGCTGCTT
CGACATTTGGTTTCCTTTTGATGGCATATGGAACGCTTTCAGATGCAGCA
TGGGAAGGACGCTCTCTTCCGTTTCCTCGCGGCGGATCATGCCTTGCACA
GGTACATATATGTGTTTTGGGCTAAGACAGCAGCAGTTTCACCATCTCCA
TGATAGACTGGGCAGCGCGAACTCTCGCGACAGCATGGTATCTAAAGTGT
CGGTCTGGTGCGATAAGACGTTGTTGGGATTGTTGCACGGCGGCACACCA
TTATGCCGCCTGTTCCCCAAGAGCTGCGAGAGGCCCACGCAGGTCATTCA
ACGGTGGTTCGCCCTTGTGTCCGGTTTGTTTCAGAGCAGGAGTTGGTTGA
TCGGCGGCCACGGCTGTGGACAGCGAACTTGTACGCCGAAGTAGCGTCCA
ACAGGTGGTGATTTGTGAGTCACGCCCAATCGATCTTCAAGCGATCCAAA
GGTCCAAACGAAGTCAAAGTGTCGTTTTTGAACCGTGTTTTGAGCGAAGA
GGAGCGGCCCACCCTAGGCCGCCGTCAAGAGCATCCCGTGTGTGTGCCCC
CTTTGGAAACGAACAACGACGACGGAAAGAAACTCCCACCCCTATCGACT
TTGCAACGTCTCCATTTTTGCGTCGGCAGCTACTACCTCTTGGCAAAGAA
GCACGTTCAGGAAATCGTGATGAGGGGGGGGAAAGCAAAAGGCGCTTGCG
CGACCGCCGAGCCCTCCTCAGCTCCCGCGGCGGCATTGAAAGCCCCCAAT
GACAAGACAGAGGACCCCGGTGAGAGAAATGGGACAGAAACCACAGAAGA
ATGCGTTGTTAATTTTCTCCTACAATCAAGTTTGCTTTGTTGGCAGGTTG
AAGGTGCGCCCGATACAGAAGTACTGCTGTACAATCCCAATAGTGTCACA
ACTACAGCAACGGATTCTTCCTCGAGGACTTGGTATTCTCTGGTCGTTTT
CCAGCCTCTCAGTACGCGCGGATGTTGTCGTGTGTCGCCTATGGTAGATA
CTATTGCGATGTGAAGGCGTATAAAGGTCGAGTGCACTGCTACTGCTGCT
GCTGCAGCAGACGCGAGCGTTTTACAGCAGATATGGAGAAGGTGAAAATC
CCACGAGATATAATATGAACTCTACGCTTAAGGCTCGATCGATTTCAAGT
ACCCCGCGCCGAGATAACCGTCTTTGTTCCCTCACCCGTACTCTCCGGAA
TTGTCGTTTACCTAGCTCGCTTGGTATGAACGTCGACAAGTGTACTGTAG
CCAATTGCGATCCTACTACTGCAGTGGCATTTTTTTGCTGACACATGGGG
TACGAGACCAGCTCGCTGGAAGGGCCCTCTTTCACCATCCCACCCTCGAG
GTGACGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig110:28052..31708+

>mRNA_Ecto-sp13_S_contig110.885.1 ID=mRNA_Ecto-sp13_S_contig110.885.1|Name=mRNA_Ecto-sp13_S_contig110.885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig110:28052..31708+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCGGTATTCGAAGTCAGCTCCGGCCCACGAGAGGCAGTGTCAGC
GCTGACAGGCATGTCGCCTTTCCCGGCTGTAGCTGTCAGCAGCAGCAGCA
GCAGCGAGGACAAGGGCCCTGAAAACGCATGCATGTCTTCTTCAATGTCA
CCACCAGCGCCACCATCATCGCCACCACAACCACCATTATCTCCACCACC
GTCATCATCACCACCACCACCATCTCCACCACCATCACCGCTATCATTGT
CACCATCATCATCATCATGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCA
ATAGCCTCAGCAGCCTCAATATCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCTGCTGCTGCTGCCGCATCAACAGAAGCAGCAGCATCAAGGGCAGCAT
CAAAGGCAGCAGCAGCACTAGAAGGCGCAATGACGAGCGCCAACGAGAGG
CACGCCAGAACACTTGAAGCTATTCAGGCCCAAAGGGCGTCCTTTGCTCC
GACCGCTTTTCCTCCTTCGACATCGGTTGTTGAAAAAAATGATGGCCTGC
CCGAAGCAGAACCAGCACCAGCACCAACCCCAGCCGCAGAGGAATCTGAG
GAAGAAGAGATGGCTGCCGCTGCCGGTGACGACGTCGGTAGCACTACTGA
GAACGTGGAACTGGAGAGTGTCGCCGCGTTCATCGCAAGCTACGCAGGAG
AGCAAGACGCAGCGGCGAAGGCAAACCGTCTTCCCACCAAGCCCTCAGAG
CCCCCGTTCTTGGTCCCGCGAGGGATGTCTGTGCCGTCCACGAGGAAGAT
TCAGCTGGTGATTGCCCACACGGCGGAAAAGACGATAGAAGTCCCGGGAT
TCGAAGCATTCATGAAGATGCAGCATGGGAAGGACGCTCTCTTCCGTTTC
CTCGCGGCGGATCATGCCTTGCACAGCTACTACCTCTTGGCAAAGAAGCA
CGTTCAGGAAATCGTGATGAGGGGGGGGAAAGCAAAAGGCGCTTGCGCGA
CCGCCGAGCCCTCCTCAGCTCCCGCGGCGGCATTGAAAGCCCCCAATGAC
AAGACAGAGGACCCCGGTGAGAGAAATGGGACAGAAACCACAGAAGAATG
CGTTGTTAATTTTCTCCTACAATCAAGTTTGCTTTGTTGGCAGGTTGAAG
GTGCGCCCGATACAGAAGTACTGCTGTACAATCCCAATAGTGTCACAACT
ACAGCAACGGATTCTTCCTCGAGGACTTGGTATTCTCTGGTCGTTTTCCA
GCCTCTCAGTACGCGCGGATGTTGTCGTGTGTCGCCTATGGTAGATACTA
TTGCGATGTGA
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