mRNA_Ecto-sp13_S_contig10985.864.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10985.864.1
Unique NamemRNA_Ecto-sp13_S_contig10985.864.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: D8LQR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR6_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 3.700e-98
Identity = 148/160 (92.50%), Postives = 149/160 (93.12%), Query Frame = 1
Query:    1 MVVMIPVAAVVCLAVGVPYLWLGHQHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRSTHAKRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADAKARRAENLLAH 480
            MVVMIPVAAVVCLAVGVPYL LG+QHY AFGGVNVA Q VLLFLCINVVICLWELCLCYKHALIRSTHAKRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLAD K      LLAH
Sbjct:    1 MVVMIPVAAVVCLAVGVPYLSLGYQHYAAFGGVNVAAQLVLLFLCINVVICLWELCLCYKHALIRSTHAKRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADPKITGMVGLLAH 160          
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A0L0FZ44_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FZ44_9EUKA)

HSP 1 Score: 122 bits (306), Expect = 1.640e-31
Identity = 61/148 (41.22%), Postives = 90/148 (60.81%), Query Frame = 1
Query:   19 VAAVVCLAVGVPYLWLGHQHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRSTHAKRVKDG----QTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADAK 450
            V  ++CL +G P +  G  HY  +G  N + Q+++LFL +N +ICLWEL L YK+  I + H KR+KD     Q +S   +  + +  ++   P  W+ IWIDY  +D +Y    + GFNIDVGNGH+TLLPSL +  S++ P+  AK
Sbjct:    3 VIILLCLLMGPPVIVCGFLHYVTYGW-NSSAQALILFLLVNTLICLWELVLYYKYDRIHNKHTKRIKDNFYTTQPQSEDFIFVQDVPITKAFCPDLWSQIWIDYGYYDPSYADKTTFGFNIDVGNGHSTLLPSLLMAVSIISPIFSAK 149          
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A7S4NL81_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NL81_9EUKA)

HSP 1 Score: 107 bits (266), Expect = 2.470e-25
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  100 NVATQSVLLFLCINVVICLWELCLCYKHALIRSTHAKRVKDGQTKSVT--IVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADAK 450
            N    SVL F  IN++ICLWEL LCY +  I  TH  R+K G  K +   IV+F+ +   ++    FWA +WIDY R+D AY    + G+NIDVGNGH++L+PS+ ++        DA+
Sbjct:   49 NPLALSVLFFFPINLLICLWELILCYNYEFIHKTHQDRIKSGFYKKMDAPIVLFKDISLGQLFCTDFWAYVWIDYCRYDSAYADKTTFGYNIDVGNGHSSLIPSILMITFCYYEYLDAR 167          
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A7S2WL51_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL51_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.260e-19
Identity = 53/155 (34.19%), Postives = 82/155 (52.90%), Query Frame = 1
Query:   22 AAVVCLAVGVPYLWLGHQHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRSTHAKRVKD---GQTKSVTIVVFRW-MRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADAKARRAENLL 474
            AA   + +G+P  W    HY   G VN    ++  FL +N ++CLWE+ L  + +LI   H +  KD   G++ +V +  F   +    +     WA +W  Y+ +D +Y    S GF +DVGNG++TL+P+LF L SM +PL  A+      LL
Sbjct:   17 AAYTAIGMGLPMWW----HYQTHGVVNAMQAALAFFLPLNAIVCLWEMSLGKEISLIEQKH-RLYKDKFKGRSLAVVLQFFTLDVHLGNLFDSRLWAEVWASYSVYDPSYADRRSFGFFVDVGNGYSTLVPTLFFLYSMTQPLCSARTTGIVGLL 166          
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A7Z7HR61_9PROT (Uncharacterized protein n=1 Tax=Sterolibacterium denitrificans TaxID=157592 RepID=A0A7Z7HR61_9PROT)

HSP 1 Score: 85.9 bits (211), Expect = 2.100e-17
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   73 QHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALI---RSTHAKRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFL 414
             H+   G  +V    V+ FL +N++ICLWE+CL  +  LI      + KR  + + + V   V   +  S +LSP +W ++W  Y+ FD +Y    + GFN+DVGNG  TL+P L L
Sbjct:   21 NHHQVTGNFSVVYLLVMFFLSLNMIICLWEMCLFARIDLIAQKNEAYRKRFPNDKNQPVLDFVTSKVTLSNVLSPDYWCDVWATYSLFDGSYADKRTLGFNLDVGNGFWTLIPCLIL 137          
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A6B1G8G8_9ACTN (Uncharacterized protein n=4 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6B1G8G8_9ACTN)

HSP 1 Score: 81.6 bits (200), Expect = 9.620e-16
Identity = 44/126 (34.92%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   58 LWLGHQHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRSTHA----KRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLAS 423
            L +GH+ Y   GGV++      LFL  N+VIC WE+CL ++   I S  A    +R++ G++ ++  +  + +      SP+ WA++W  Y+ +D +Y    + GFN+DVGNG  T +P+L L A+
Sbjct:   24 LGIGHRVYW-HGGVDLTYVVFALFLSTNLVICFWEICLFFRRDYIESRSAYWQQQRLRTGRSPALAFLATK-VPLRSAFSPTVWADVWAAYSVYDGSYADRRTYGFNVDVGNGFITAIPTLILYAA 147          
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A250XGH0_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XGH0_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 4.530e-14
Identity = 44/130 (33.85%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   70 HQHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRSTH---AKRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADAK 450
            + HY   G ++    S+ LF  INV+IC WE+ L     LI++ +    KR+K  +  S  + +F  +  S+ +S  +WA +W  Y+  D +Y    + GF +DVGNG TT++PS+    SM  P   A+
Sbjct:   21 YYHYELHG-ISYLQASLALFCSINVMICWWEMGLFLNRGLIKTQYNAFKKRLKKNELPS-PMFLFDHVTLSQAVSLEYWALVWSTYSLIDPSYADQTTFGFFVDVGNGFTTIIPSVIFAVSMTWPFMSAR 148          
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A6L7VQC2_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7VQC2_9GAMM)

HSP 1 Score: 77.0 bits (188), Expect = 4.690e-14
Identity = 43/121 (35.54%), Postives = 70/121 (57.85%), Query Frame = 1
Query:   64 LGHQHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRST----HAKRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFL 414
            +G + Y  FG V +    + +FL IN++IC WE+CL  + + + S     H   +  G+T      + R + +S++LSP+ WA++W  YA++D A+    +  FN+DVGNG  T LP+L L
Sbjct:   20 IGTRFYL-FGDVTLVYAVLGVFLSINLLICYWEICLFLQRSYVTSRSEYWHQWHLATGKTPHAAFFLER-IPWSKVLSPTTWADVWATYAQYDPAFADRRTFSFNVDVGNGFVTPLPTLAL 138          
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A6L7UDH5_9BACT (Uncharacterized protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L7UDH5_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 6.090e-14
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   79 YTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALI-RSTHAKRVKDGQTKSVTIVVFRWMR--FSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLAS 423
            + A G +N+    + LF  IN+++C WE+CL ++   I R T   R +  +T       F   R   + +LSP+ WA+ W  YA++D +Y    + GFN+D+GNG  T LP+L L A+
Sbjct:   62 FQAHGDLNLIHSVLSLFFSINLLVCYWEICLFFRRDYIERRTGYWRERQRETGRTPAGEFLASRVPLTRLLSPTVWADAWATYAQYDSSYADRRTFGFNVDIGNGFVTPLPTLILYAA 179          
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A5S9MVK7_9GAMM (Uncharacterized protein n=2 Tax=BD1-7 clade bacterium TaxID=2029982 RepID=A0A5S9MVK7_9GAMM)

HSP 1 Score: 74.7 bits (182), Expect = 3.450e-13
Identity = 39/114 (34.21%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   76 HYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRSTHAKRVKD---GQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSL 408
            HY     + +    V  FLC+N++IC WE+CL  +   I   +A   +D    +   V   + R +  S+ LSP+ W+ IW  Y++FD +Y    + GF  D+GNG  TL+P L
Sbjct:   22 HYLMHEKLTLTYTLVAFFLCLNLLICFWEICLFLRIDFIAERNAIYTRDHLDDKNTPVNDFMMRKVPISKALSPTVWSEIWATYSQFDGSYADRRTFGFAADIGNGFWTLIPGL 135          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQR6_ECTSI3.700e-9892.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0L0FZ44_9EUKA1.640e-3141.22Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S4NL81_9EUKA2.470e-2542.86Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A7S2WL51_9STRA6.260e-1934.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7Z7HR61_9PROT2.100e-1736.75Uncharacterized protein n=1 Tax=Sterolibacterium d... [more]
A0A6B1G8G8_9ACTN9.620e-1634.92Uncharacterized protein n=4 Tax=Acidimicrobiales b... [more]
A0A250XGH0_9CHLO4.530e-1433.85Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A6L7VQC2_9GAMM4.690e-1435.54Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A6L7UDH5_9BACT6.090e-1435.59Uncharacterized protein n=2 Tax=Acidobacteria bact... [more]
A0A5S9MVK7_9GAMM3.450e-1334.21Uncharacterized protein n=2 Tax=BD1-7 clade bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10985contigEcto-sp13_S_contig10985:4187..5259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size537
Hectar predicted targeting categoryother localisation
Exons2
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462567.2967074-UTR-Ecto-sp13_S_contig10985:4186..43351681462567.2967074-UTR-Ecto-sp13_S_contig10985:4186..4335Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10985 4187..4335 +
1681462567.32444-UTR-Ecto-sp13_S_contig10985:5237..52591681462567.32444-UTR-Ecto-sp13_S_contig10985:5237..5259Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10985 5238..5259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462567.3066413-CDS-Ecto-sp13_S_contig10985:4335..44141681462567.3066413-CDS-Ecto-sp13_S_contig10985:4335..4414Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10985 4336..4414 +
1681462567.3157218-CDS-Ecto-sp13_S_contig10985:4950..52371681462567.3157218-CDS-Ecto-sp13_S_contig10985:4950..5237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10985 4951..5237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10985.864.1prot_Ecto-sp13_S_contig10985.864.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10985 4336..5237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10985.864.1

>prot_Ecto-sp13_S_contig10985.864.1 ID=prot_Ecto-sp13_S_contig10985.864.1|Name=mRNA_Ecto-sp13_S_contig10985.864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MPVGAVPVLQACPDSLDARQAGEGRPDEISHDSGIPLDALQRDTQPVLLG
QHLDRLRPLRRRLRATRLCRLQHRRWQRPHHPLAEPVPAGVDGSAAGGRQ
GEKSGKSLGTCGGSSPVLRTV*
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mRNA from alignment at Ecto-sp13_S_contig10985:4187..5259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10985.864.1 ID=mRNA_Ecto-sp13_S_contig10985.864.1|Name=mRNA_Ecto-sp13_S_contig10985.864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10985:4187..5259+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGTGATGATCCCTGTGGCGGCTGTGGTTTGCCTCGCCGTCGGGGT TCCGTACCTGTGGCTCGGCCATCAGCACTACACGGCCTTCGGTGGGGTGA ACGTTGCGACGCAGTCGGTCCTCTTGTTCCTGTGCATCAACGTGGTGATA TGCCTGTGGGAGCTGTGCCTGTGCTACAAGCATGCCCTGATTCGCTCGAC GCACGCCAAGCGGGTGAAGGACGGCCAGGTGAAACTTGACAACTGCTTGC AGCTCGTCGGGATGGGTTGAAAGCTGGTCGCGGGTACAAGGTGTGCACTG CCTACAGCAGCGTATCATGAATATTGCAAAATATTGTCGGCCAAGAACAA AATGTTGGTCTGCGGTAACAGCCGCGGTTTACCACTGTGGTACACAGCAG CCGTCAAACATGCGTGCTGCTGTGCTGCATGAATTCCCTTGCATAACCTT CCACGGGGAGCCTTATAGGCAGGTCAACCTCAGCATGAACCACCAAAGTA CACCATACTGCTGTGCATGGATAAGACTAGAGGAGTGCACAGAGGCGGTC TACCATGAACCACCATACGGAAAAACAAGGCATGTGGTCCCTTCAACCTA CTCTCATACTTGCCCTCCTTATCCCGCCTAACTAATGTCGTCTCCCCCTG TACGCATCTTGCGTGGAATTAGTGCTACTACCGCGTGAAATCCGTTGGAT TCAGCTAATGCCCGAGGTGGATGTACTGCTGCAAACATGTGTGCATTCAT CCCTGTTTTGTCAGACGAAATCAGTCACGATAGTGGTATTCCGCTGGATG CGCTTCAGCGAGATACTCAGCCCGTCCTTCTGGGCCAACATCTGGATAGA CTACGCCCGCTTCGACGACGCCTACGTGCAACCCGTCTCTGCCGGCTTCA ACATCGACGTTGGCAACGGCCACACCACCCTCTTGCCGAGCCTGTTCCTG CTGGCGTCGATGGTTCGGCCGCTGGCGGACGCCAAGGCGAGAAGAGCGGA AAATCTCTTGGCACATGCGGCGGTAGTAGTCCTGTGCTTCGTACCGTGTA ATTTGTTTTACCTACAAGCCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10985:4187..5259+

>mRNA_Ecto-sp13_S_contig10985.864.1 ID=mRNA_Ecto-sp13_S_contig10985.864.1|Name=mRNA_Ecto-sp13_S_contig10985.864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10985:4187..5259+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGTGGGAGCTGTGCCTGTGCTACAAGCATGCCCTGATTCGCTCGA
CGCACGCCAAGCGGGTGAAGGACGGCCAGACGAAATCAGTCACGATAGTG
GTATTCCGCTGGATGCGCTTCAGCGAGATACTCAGCCCGTCCTTCTGGGC
CAACATCTGGATAGACTACGCCCGCTTCGACGACGCCTACGTGCAACCCG
TCTCTGCCGGCTTCAACATCGACGTTGGCAACGGCCACACCACCCTCTTG
CCGAGCCTGTTCCTGCTGGCGTCGATGGTTCGGCCGCTGGCGGACGCCAA
GGCGAGAAGAGCGGAAAATCTCTTGGCACATGCGGCGGTAGTAGTCCTGT
GCTTCGTACCGTGTAA
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