mRNA_Ecto-sp13_S_contig10985.864.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: D8LQR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR6_ECTSI) HSP 1 Score: 290 bits (742), Expect = 3.700e-98 Identity = 148/160 (92.50%), Postives = 149/160 (93.12%), Query Frame = 1
Query: 1 MVVMIPVAAVVCLAVGVPYLWLGHQHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRSTHAKRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADAKARRAENLLAH 480
MVVMIPVAAVVCLAVGVPYL LG+QHY AFGGVNVA Q VLLFLCINVVICLWELCLCYKHALIRSTHAKRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLAD K LLAH
Sbjct: 1 MVVMIPVAAVVCLAVGVPYLSLGYQHYAAFGGVNVAAQLVLLFLCINVVICLWELCLCYKHALIRSTHAKRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADPKITGMVGLLAH 160
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A0L0FZ44_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FZ44_9EUKA) HSP 1 Score: 122 bits (306), Expect = 1.640e-31 Identity = 61/148 (41.22%), Postives = 90/148 (60.81%), Query Frame = 1
Query: 19 VAAVVCLAVGVPYLWLGHQHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRSTHAKRVKDG----QTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADAK 450
V ++CL +G P + G HY +G N + Q+++LFL +N +ICLWEL L YK+ I + H KR+KD Q +S + + + ++ P W+ IWIDY +D +Y + GFNIDVGNGH+TLLPSL + S++ P+ AK
Sbjct: 3 VIILLCLLMGPPVIVCGFLHYVTYGW-NSSAQALILFLLVNTLICLWELVLYYKYDRIHNKHTKRIKDNFYTTQPQSEDFIFVQDVPITKAFCPDLWSQIWIDYGYYDPSYADKTTFGFNIDVGNGHSTLLPSLLMAVSIISPIFSAK 149
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A7S4NL81_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NL81_9EUKA) HSP 1 Score: 107 bits (266), Expect = 2.470e-25 Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 1
Query: 100 NVATQSVLLFLCINVVICLWELCLCYKHALIRSTHAKRVKDGQTKSVT--IVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADAK 450
N SVL F IN++ICLWEL LCY + I TH R+K G K + IV+F+ + ++ FWA +WIDY R+D AY + G+NIDVGNGH++L+PS+ ++ DA+
Sbjct: 49 NPLALSVLFFFPINLLICLWELILCYNYEFIHKTHQDRIKSGFYKKMDAPIVLFKDISLGQLFCTDFWAYVWIDYCRYDSAYADKTTFGYNIDVGNGHSSLIPSILMITFCYYEYLDAR 167
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A7S2WL51_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL51_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 6.260e-19 Identity = 53/155 (34.19%), Postives = 82/155 (52.90%), Query Frame = 1
Query: 22 AAVVCLAVGVPYLWLGHQHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRSTHAKRVKD---GQTKSVTIVVFRW-MRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADAKARRAENLL 474
AA + +G+P W HY G VN ++ FL +N ++CLWE+ L + +LI H + KD G++ +V + F + + WA +W Y+ +D +Y S GF +DVGNG++TL+P+LF L SM +PL A+ LL
Sbjct: 17 AAYTAIGMGLPMWW----HYQTHGVVNAMQAALAFFLPLNAIVCLWEMSLGKEISLIEQKH-RLYKDKFKGRSLAVVLQFFTLDVHLGNLFDSRLWAEVWASYSVYDPSYADRRSFGFFVDVGNGYSTLVPTLFFLYSMTQPLCSARTTGIVGLL 166
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A7Z7HR61_9PROT (Uncharacterized protein n=1 Tax=Sterolibacterium denitrificans TaxID=157592 RepID=A0A7Z7HR61_9PROT) HSP 1 Score: 85.9 bits (211), Expect = 2.100e-17 Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 1
Query: 73 QHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALI---RSTHAKRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFL 414
H+ G +V V+ FL +N++ICLWE+CL + LI + KR + + + V V + S +LSP +W ++W Y+ FD +Y + GFN+DVGNG TL+P L L
Sbjct: 21 NHHQVTGNFSVVYLLVMFFLSLNMIICLWEMCLFARIDLIAQKNEAYRKRFPNDKNQPVLDFVTSKVTLSNVLSPDYWCDVWATYSLFDGSYADKRTLGFNLDVGNGFWTLIPCLIL 137
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A6B1G8G8_9ACTN (Uncharacterized protein n=4 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6B1G8G8_9ACTN) HSP 1 Score: 81.6 bits (200), Expect = 9.620e-16 Identity = 44/126 (34.92%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 58 LWLGHQHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRSTHA----KRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLAS 423
L +GH+ Y GGV++ LFL N+VIC WE+CL ++ I S A +R++ G++ ++ + + + SP+ WA++W Y+ +D +Y + GFN+DVGNG T +P+L L A+
Sbjct: 24 LGIGHRVYW-HGGVDLTYVVFALFLSTNLVICFWEICLFFRRDYIESRSAYWQQQRLRTGRSPALAFLATK-VPLRSAFSPTVWADVWAAYSVYDGSYADRRTYGFNVDVGNGFITAIPTLILYAA 147
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A250XGH0_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XGH0_9CHLO) HSP 1 Score: 77.0 bits (188), Expect = 4.530e-14 Identity = 44/130 (33.85%), Postives = 70/130 (53.85%), Query Frame = 1
Query: 70 HQHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRSTH---AKRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADAK 450
+ HY G ++ S+ LF INV+IC WE+ L LI++ + KR+K + S + +F + S+ +S +WA +W Y+ D +Y + GF +DVGNG TT++PS+ SM P A+
Sbjct: 21 YYHYELHG-ISYLQASLALFCSINVMICWWEMGLFLNRGLIKTQYNAFKKRLKKNELPS-PMFLFDHVTLSQAVSLEYWALVWSTYSLIDPSYADQTTFGFFVDVGNGFTTIIPSVIFAVSMTWPFMSAR 148
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A6L7VQC2_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7VQC2_9GAMM) HSP 1 Score: 77.0 bits (188), Expect = 4.690e-14 Identity = 43/121 (35.54%), Postives = 70/121 (57.85%), Query Frame = 1
Query: 64 LGHQHYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRST----HAKRVKDGQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFL 414
+G + Y FG V + + +FL IN++IC WE+CL + + + S H + G+T + R + +S++LSP+ WA++W YA++D A+ + FN+DVGNG T LP+L L
Sbjct: 20 IGTRFYL-FGDVTLVYAVLGVFLSINLLICYWEICLFLQRSYVTSRSEYWHQWHLATGKTPHAAFFLER-IPWSKVLSPTTWADVWATYAQYDPAFADRRTFSFNVDVGNGFVTPLPTLAL 138
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A6L7UDH5_9BACT (Uncharacterized protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L7UDH5_9BACT) HSP 1 Score: 77.4 bits (189), Expect = 6.090e-14 Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1
Query: 79 YTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALI-RSTHAKRVKDGQTKSVTIVVFRWMR--FSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLAS 423
+ A G +N+ + LF IN+++C WE+CL ++ I R T R + +T F R + +LSP+ WA+ W YA++D +Y + GFN+D+GNG T LP+L L A+
Sbjct: 62 FQAHGDLNLIHSVLSLFFSINLLVCYWEICLFFRRDYIERRTGYWRERQRETGRTPAGEFLASRVPLTRLLSPTVWADAWATYAQYDSSYADRRTFGFNVDIGNGFVTPLPTLILYAA 179
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Match: A0A5S9MVK7_9GAMM (Uncharacterized protein n=2 Tax=BD1-7 clade bacterium TaxID=2029982 RepID=A0A5S9MVK7_9GAMM) HSP 1 Score: 74.7 bits (182), Expect = 3.450e-13 Identity = 39/114 (34.21%), Postives = 60/114 (52.63%), Query Frame = 1
Query: 76 HYTAFGGVNVATQSVLLFLCINVVICLWELCLCYKHALIRSTHAKRVKD---GQTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSL 408
HY + + V FLC+N++IC WE+CL + I +A +D + V + R + S+ LSP+ W+ IW Y++FD +Y + GF D+GNG TL+P L
Sbjct: 22 HYLMHEKLTLTYTLVAFFLCLNLLICFWEICLFLRIDFIAERNAIYTRDHLDDKNTPVNDFMMRKVPISKALSPTVWSEIWATYSQFDGSYADRRTFGFAADIGNGFWTLIPGL 135 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10985.864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10985.864.1 >prot_Ecto-sp13_S_contig10985.864.1 ID=prot_Ecto-sp13_S_contig10985.864.1|Name=mRNA_Ecto-sp13_S_contig10985.864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp MPVGAVPVLQACPDSLDARQAGEGRPDEISHDSGIPLDALQRDTQPVLLGback to top mRNA from alignment at Ecto-sp13_S_contig10985:4187..5259+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10985.864.1 ID=mRNA_Ecto-sp13_S_contig10985.864.1|Name=mRNA_Ecto-sp13_S_contig10985.864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10985:4187..5259+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10985:4187..5259+ >mRNA_Ecto-sp13_S_contig10985.864.1 ID=mRNA_Ecto-sp13_S_contig10985.864.1|Name=mRNA_Ecto-sp13_S_contig10985.864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10985:4187..5259+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |