mRNA_Ecto-sp13_S_contig10985.863.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10985.863.1
Unique NamemRNA_Ecto-sp13_S_contig10985.863.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10985.863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10985contigEcto-sp13_S_contig10985:259..3348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size815
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_002020.1
Cds size813
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462567.258088-CDS-Ecto-sp13_S_contig10985:260..6891681462567.258088-CDS-Ecto-sp13_S_contig10985:260..689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10985 261..689 -
1681462567.2728682-CDS-Ecto-sp13_S_contig10985:2964..33481681462567.2728682-CDS-Ecto-sp13_S_contig10985:2964..3348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10985 2965..3348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10985.863.1prot_Ecto-sp13_S_contig10985.863.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10985 261..3348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10985.863.1

>prot_Ecto-sp13_S_contig10985.863.1 ID=prot_Ecto-sp13_S_contig10985.863.1|Name=mRNA_Ecto-sp13_S_contig10985.863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp
TASGHLWVSGSSHQHVGKRRAEAAGAAAVPDTGGRPTRVPAQSPLLPVDW
WRRPPSPLVSHARPLWRSSSGTHGEITPTCAAWAAAEATTGLRKRARSSP
PAGAAASPPSEGEAAGGGSSLLRLESAQSIPSMMTPGSSVISQDSTFFTR
KPAAKPKSGGWSSSAIDAAPPPPMMSAPTPSSSGAVAAAMAAAAAAAEEA
AAKAETSRGSSTTGGASSGVSEGGTSTGRSPTAEAAAKYASYCSFSFSSS
SSSSSSSSGVEDLLRARKRGD
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mRNA from alignment at Ecto-sp13_S_contig10985:259..3348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10985.863.1 ID=mRNA_Ecto-sp13_S_contig10985.863.1|Name=mRNA_Ecto-sp13_S_contig10985.863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3090bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10985:259..3348- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTGCTTCTGGCCATCTCTGGGTCTCCGGGTCTTCTCACCAGCACGTGGG
CAAGCGGCGCGCAGAAGCAGCAGGGGCAGCAGCAGTCCCGGATACGGGAG
GGCGTCCCACTCGCGTGCCGGCGCAGTCGCCCCTCCTCCCCGTGGACTGG
TGGCGCCGCCCGCCCTCTCCCCTCGTGTCGCACGCGCGCCCTCTGTGGAG
GTCTAGCTCAGGCACCCACGGCGAGATCACTCCAACCTGTGCGGCATGGG
CAGCGGCAGAAGCAACCACGGGGCTTCGAAAGCGGGCGAGATCATCACCA
CCAGCGGGAGCCGCCGCTTCCCCGCCGAGCGAGGGAGAGGCAGCTGGCGG
CGGGAGCTCGCTCTTGAGGCTGGAATCGGCCCAGGTGTGTTTGTGTGTGT
GTCCCGCACTGCTGTTCGCTGCTGCTGGAGCATGAGCGCACGCTTGCTGC
TCCCCTGCCGCTGGTTAGTCGGTGGTTCCCCAACGAAAAATTAATTTGTC
CGTCCGCCTCCACCTTTTTCTCTGATTCTTGCCAACTACGTGTTTTGCTC
ATGTGTAGATAACTGTTGGTGTTGTCTCGTCGGTTGTTCCTTGTGGGTCC
CGGCTTAGTAACTACGAAGCAGCAGCTGGTGCGCGTATGTCGGCGTCGCC
CGCTCTGGTCGTGGCCTTGAAATGATAGATAGGGAAGGAGCGTGCGATAA
GTATGACGTGTAGTTCCCTCCCCCCAACAGCCGCCCTTTGGGAGGGCGCT
GCGCTGCTGGTATTTGGGCGTTGGTCTCTTGGTAATTGGTTTTACGGTTC
TTTACCCCCTGCCTGACACCGTCAATCAATCACAGCCGTTTCGCATCAAC
GACTATACATTCGCACCACGGGGCGTTAACTGCATGCAGCCACAAAAAGC
CAGATGGCCGGCGGCGACAAATGTCGGCTTTTTTGGCGGGGGGCGAAACC
AATGCAACATCGCGAGGAGGGTGAAGGATGACGCTGTTGTTGTTGTCTTG
CCCGAAGAAAATACTTGGTGGAAAACGGGGAAATAGTCTTGTACCTCCTC
GACCTTGAGAACTTGGCGACTTTTGTACCGGTAACCTGTATTCCGGACGA
CCTCTTTGGGAAGAGTAAGATTTTCGTAAGATTCTCACACGACATGAGCG
CATATGCACATTGTAGACGTCACCCCGAGCAAGGACAGCGGTTGTGTTGG
ATGTGCTGCGGCACCTTCTCTCCTGCGTGGATTCGTACAAAACCCGATCA
CAGCTACTAGCAGGTGTGCGAACGGGGCATGCAGCACAGCGCTGTGTGTC
TGTTGTTGACTTCCAGAGCCGCGCAACAGCAGTTGGTGCGTCCTCGTCGA
CACCCCTCGAATCTCGCGCGAAGGGAGTGCCTTCCTCTGTGTGCGCGAAT
GGAAAGGACGGCGCGCGAACAGCAGTTAAAGCCCAGCATTGTTGCTCGTT
TGTCACCACCTGCTGCAATTGTTTGCCTGCTCGAAACGAGTGGAGGTTGG
CGAGAACGCCTTAGGCGCGAATGCGCCACGTGTGGCCGCTCGGCCGTGGT
CTCTGGTTCGTAGCACTCCCCGATCACCGACCCTCTGGGCGGAATCGCCT
CTTCTTCTTCGAGCAAACAAGCTGCACCGCTCCGTTTTTTATGTAGGTGG
TTGGCAATCAATCAGCAGAGGGCGAGCTACTGCGCTCTGCTATAGGATAG
TGCTAGAGGGCCCGGTCGCCCTTTGGCTGTTTAGTTTGCGTTGATGTACA
AATAAGGTCGGTCAAGCGCCTCTGCCTGGAAGCACAGGTGGTCCTTCTGA
AAGTTTCGTGGCACGGTTTACGACAATTTTGCTACAATATAAACACAGGG
AGACTACCGTCAGATACAACCGCAGTCGAAGGGATTGCGTTAGAGGCTTT
GCAGTGAGCGGAGGGAAACTGACGGATAACTTCGCTGGGAGCAAGAAAAA
CTTTCGAAACAGGTCCAACTTGTTACCTTCCGCCGTACGCACACATGTGT
GAGTCCTCATTTTCTCAAAAACTACTATCTTCTCATGGTTTGAATTGTTT
TAGCCACAGAACCGTTTCAGGGAAGTGTTTGCGTGCCTATTGAACGTTAT
TTCTGGACAATTTTTGCTCCCCGTCCCTGACGCAAGCTGCCGACAGTCAT
GTTCGTAATAGTTTTTTCAACTACTCCGGCCGGCAAGAGACAGGTGGTCC
TCGCGGACCTATGCGTACCTGTCCGGACTGCAACTTAACCTTGTGATGAA
GTAGAACCGGGCGGGGGTACGCAGACCCTTTCCCTAAACCCTACAACCCT
AACCCAGCTTCCCCGATCGAACGCTTCATTCATGTTTTCCTGGACGGAAA
TCCCGCGAAGGCTACGGTCCTGAATATGCCAGCTCATTGCGACTTCACCA
CCCCCTCCTCGCTCTGTGGACCACGCGCCGTAGTCAAGCTCCCTCCCGCC
ACCCCTGCTGCCCCCTCTGCCGTTGTTCCCATGATCCCCTCTATCGCTCG
CTGCGTTATTTATCTCTCTCCCTCTCTCCCTGTGTCTCTCCCTTCCTCCC
CCCCGTCCCTCCCTCCCTCCCTACCCTCCCTCCCTCCCTCCCTCCTTCCT
TGTCTCCCTCTGTGTCTCTCTTTTCCTCCCCACCGTCCCTCCTCCCTCCC
TCCCTCCAGTCGATCCCCTCCATGATGACCCCAGGGTCTTCGGTAATCTC
CCAGGACTCCACCTTCTTCACCAGGAAGCCTGCAGCCAAGCCCAAGAGCG
GCGGCTGGTCGTCTTCCGCCATAGACGCCGCCCCGCCACCGCCGATGATG
TCGGCCCCGACCCCGTCCTCCTCTGGGGCGGTGGCGGCGGCGATGGCAGC
GGCGGCGGCGGCAGCGGAGGAGGCGGCGGCGAAGGCGGAGACCTCGAGGG
GGAGTTCCACTACCGGAGGCGCCAGCAGCGGCGTCAGCGAAGGAGGGACC
TCGACGGGACGGTCGCCGACGGCAGAGGCAGCCGCGAAGTACGCTTCTTA
TTGCTCGTTCTCGTTCTCTTCGTCTTCGTCTTCGTCTTCGTCGTCCTCTG
GCGTAGAAGACCTTCTTCGAGCTCGAAAAAGGGGTGACCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10985:259..3348-

>mRNA_Ecto-sp13_S_contig10985.863.1 ID=mRNA_Ecto-sp13_S_contig10985.863.1|Name=mRNA_Ecto-sp13_S_contig10985.863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10985:259..3348- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTGCTTCTGGCCATCTCTGGGTCTCCGGGTCTTCTCACCAGCACGTGGG
CAAGCGGCGCGCAGAAGCAGCAGGGGCAGCAGCAGTCCCGGATACGGGAG
GGCGTCCCACTCGCGTGCCGGCGCAGTCGCCCCTCCTCCCCGTGGACTGG
TGGCGCCGCCCGCCCTCTCCCCTCGTGTCGCACGCGCGCCCTCTGTGGAG
GTCTAGCTCAGGCACCCACGGCGAGATCACTCCAACCTGTGCGGCATGGG
CAGCGGCAGAAGCAACCACGGGGCTTCGAAAGCGGGCGAGATCATCACCA
CCAGCGGGAGCCGCCGCTTCCCCGCCGAGCGAGGGAGAGGCAGCTGGCGG
CGGGAGCTCGCTCTTGAGGCTGGAATCGGCCCAGTCGATCCCCTCCATGA
TGACCCCAGGGTCTTCGGTAATCTCCCAGGACTCCACCTTCTTCACCAGG
AAGCCTGCAGCCAAGCCCAAGAGCGGCGGCTGGTCGTCTTCCGCCATAGA
CGCCGCCCCGCCACCGCCGATGATGTCGGCCCCGACCCCGTCCTCCTCTG
GGGCGGTGGCGGCGGCGATGGCAGCGGCGGCGGCGGCAGCGGAGGAGGCG
GCGGCGAAGGCGGAGACCTCGAGGGGGAGTTCCACTACCGGAGGCGCCAG
CAGCGGCGTCAGCGAAGGAGGGACCTCGACGGGACGGTCGCCGACGGCAG
AGGCAGCCGCGAAGTACGCTTCTTATTGCTCGTTCTCGTTCTCTTCGTCT
TCGTCTTCGTCTTCGTCGTCCTCTGGCGTAGAAGACCTTCTTCGAGCTCG
AAAAAGGGGTGAC
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