mRNA_Ecto-sp13_S_contig10980.860.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10980.860.1
Unique NamemRNA_Ecto-sp13_S_contig10980.860.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10980.860.1 vs. uniprot
Match: D7FXB0_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB0_ECTSI)

HSP 1 Score: 455 bits (1171), Expect = 8.290e-160
Identity = 235/260 (90.38%), Postives = 247/260 (95.00%), Query Frame = 1
Query:    1 MAACMLFTSITTLVSCVFYIVGTYTASQYHYMVIAGEAVFAVVFFMDYVLSVTAEAMWLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKVARVIRNHRMLEKIGTFTDVTVTACLLGLKILGLILMTTAIIYGTEEAFKENDEGKAFEDGGTIXXSGTMRWHDSLYFTIVTLSTVGYGDVLPVMAISRMLMIAVILAALTYVPFEVGNLIDIIGSRPKNRVGYSRHLVGNRLHVVLAMVPGKDDGEGEAGF 780
            MAACMLFTSITTLVSCVFYIVGTYTA+Q+H +VIAGEAVFA+VFFMDYVLSVTAEA+WLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKV RVIRNHRMLEKIGTFTDVTV ACLLGLKILGLILMTTAIIYGTE+AFK+  +GKAF+D GTI  SGTM+WHD LYFTIVTLSTVGYGDVLPV AISRMLMI VI+ ALTYVP EVGNLIDIIGSRPKNRVGYSRHLVGN+LHVVLAMVPGKDDGEGEAGF
Sbjct:    1 MAACMLFTSITTLVSCVFYIVGTYTANQHHSIVIAGEAVFALVFFMDYVLSVTAEAVWLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKVTRVIRNHRMLEKIGTFTDVTVNACLLGLKILGLILMTTAIIYGTEQAFKDETDGKAFDDSGTIEDSGTMQWHDCLYFTIVTLSTVGYGDVLPVTAISRMLMIVVIVVALTYVPLEVGNLIDIIGSRPKNRVGYSRHLVGNKLHVVLAMVPGKDDGEGEAGF 260          
BLAST of mRNA_Ecto-sp13_S_contig10980.860.1 vs. uniprot
Match: A0A6H5K4I5_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I5_9PHAE)

HSP 1 Score: 429 bits (1103), Expect = 6.730e-138
Identity = 227/258 (87.98%), Postives = 241/258 (93.41%), Query Frame = 1
Query:    7 ACMLFTSITTLVSCVFYIVGTYTASQYHYMVIAGEAVFAVVFFMDYVLSVTAEAMWLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKVARVIRNHRMLEKIGTFTDVTVTACLLGLKILGLILMTTAIIYGTEEAFKENDEGKAFEDGGTIXXSGTMRWHDSLYFTIVTLSTVGYGDVLPVMAISRMLMIAVILAALTYVPFEVGNLIDIIGSRPKNRVGYSRHLVGNRLHVVLAMVPGKDDGEGEAGF 780
            +CMLFTSITTLVSCVF+IVGTYTA QY Y+VIAGEAVFA+VFF+DYVLSVTAEA+ LTYVLSFEGIVDLCSIFPVFGAFY WLYSLSFVRYLRLGKV RVIRNHR LEKIGTFTDVTV ACLLGLKILGLILMTTAIIYGTE+AFK +++GKAF      XX   M+WHDSLYFTIVTLSTVGYGDVLPVMAISRMLMIAVILAALTYVPFEVGNL++IIGSRPKNRVGYSRHL+GNRLHVVLAMVPGKDDGEGEAGF
Sbjct:   44 SCMLFTSITTLVSCVFFIVGTYTAHQYDYIVIAGEAVFALVFFVDYVLSVTAEAVRLTYVLSFEGIVDLCSIFPVFGAFYSWLYSLSFVRYLRLGKVTRVIRNHRTLEKIGTFTDVTVNACLLGLKILGLILMTTAIIYGTEQAFKGDEDGKAFXXXXXXXXXXXMQWHDSLYFTIVTLSTVGYGDVLPVMAISRMLMIAVILAALTYVPFEVGNLMEIIGSRPKNRVGYSRHLLGNRLHVVLAMVPGKDDGEGEAGF 301          
BLAST of mRNA_Ecto-sp13_S_contig10980.860.1 vs. uniprot
Match: A0A6H5JQ48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ48_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 8.380e-62
Identity = 123/254 (48.43%), Postives = 166/254 (65.35%), Query Frame = 1
Query:   10 CMLFTSITTLVSCVFYIVGTYTASQYHYMVIAGEAVFAVVFFMDYVLSVTAEAMWLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKVARVIRNHRMLEKIGTFTDVTVTACLLGLKILGLILMTTAIIYGTEEAFKENDEGKAFEDGGTIXXSGTMRWHDSLYFTIVTLSTVGYGDVLPVMAISRMLMIAVILAALTYVPFEVGNLIDIIGSRPKNRVGYSRHLVGNRLHVVLAMVPGKDDGEGE 771
            CML  S+ TL SC+FYI+ TY   +     I  E  F ++F +DY L+  A  + L Y L   G++DL S  P FG+F  W+ SLSFVRYLR+GK  RV+RNH++L  I    DVT+ A LL +K++G+++MT+AI+YG E    + +   AF + G        +WHD+ YFTIVTLSTVGYGDVLP+  +SR+LM+ VI+ ALTY+P EVG L+D + +RPK R G+   LVG  LHVVLAM  G+D  + E
Sbjct:   62 CMLLLSLATLSSCLFYILATYVHDRPWVGHI--ETSFGILFLVDYSLTAAAAPVPLAYALGKGGLIDLVSCLPAFGSFQPWMASLSFVRYLRVGKAIRVMRNHKLLASIFPNDDVTIKATLLIVKVIGVVMMTSAILYGVERGPTDAEGTGAFNEPG-------WQWHDAFYFTIVTLSTVGYGDVLPISVVSRLLMVCVIIFALTYIPLEVGELVDAVNARPKFRAGFPHSLVGKHLHVVLAM-SGEDSADSE 305          
BLAST of mRNA_Ecto-sp13_S_contig10980.860.1 vs. uniprot
Match: A0A836CM81_9STRA (Ion_trans domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM81_9STRA)

HSP 1 Score: 145 bits (366), Expect = 3.370e-38
Identity = 94/272 (34.56%), Postives = 145/272 (53.31%), Query Frame = 1
Query:   34 TLVSCVFYIVGTY--TASQYHYMVIAGEAV--------------------FAVVFFMDYVLSVTAEAMWLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKVARVIRNHRMLEKI--GTFTDVTVTACLLGLKILGLILMTTAIIYGTEEAFKENDEGKAFEDGGTIXXSGTMRWHDSLYFTIVTLSTVGYGDVLPVMAISRMLMIAVILAALTYVPFEVGNLIDIIGSRPKNRVGYSRHLVGNRLHVVLAMVPGKDDGEGEAG 777
            T++SC+ Y++ TY  T++   Y  + G  +                      + F +D+ LS+      L YV S+ G+VD+ SI P+     + +Y LSF R+LRL K   ++R HR+ + +  G   D++    LLG+K+ GLI + T+I+Y   EA   N +G ++    T+     + WHD+ YFTIVTLSTVGYGD+ P   ++RM+M+ +I+A+   +P EV  L D   S P+ RV Y   + G  LHV++A   G   G   AG
Sbjct:   54 TVLSCILYVIFTYFRTSTSTEYSDVNGNPLPGHVDDPYHMDNIATWIQESITITFVVDFALSLVIAPSALRYVFSWPGLVDILSIIPILEPLKQGIYVLSFTRFLRLTKAFTILRQHRLRKGVLAGEAADLSFNVFLLGVKLAGLIFIATSIVYALAEA--PNIKGFSYMVDDTVVHQ-IVEWHDAFYFTIVTLSTVGYGDITPKTWLARMVMVFIIMASFIIIPLEVARLADAYSSVPRFRVAYK--MAGKALHVIIATSSGGGYGGAAAG 320          
BLAST of mRNA_Ecto-sp13_S_contig10980.860.1 vs. uniprot
Match: D8LEK1_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK1_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 4.750e-38
Identity = 82/181 (45.30%), Postives = 116/181 (64.09%), Query Frame = 1
Query:   13 MLFTSITTLVSCVFYIVGTYTASQYHYMVIAGEAVFAVVFFMDYVLSVTAEAMWLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKVARVIRNHRMLEKIGTFTDVTVTACLLGLKILGLILMTTAIIYGTEEAFKENDEGKAFEDGGTIXXSGTMRWHDSLYFTIVTLSTVG 555
            MLF S+ TL SC+FYI+ TY   ++    +  E  + ++F +DY L+V A  + L Y L   G++DL S  P FG+F  W+ SLSFVRYLR+GK  RV+RNH++L  I    DVT+ A LL +K++G+++MT+AI+YG E    + +   AF + G        +WHD+ YFTIVTLSTVG
Sbjct:    1 MLFLSLATLSSCLFYILATYLHDRHWVRHV--ETGYGILFLVDYSLTVVAAPIPLAYALGKGGLIDLVSCLPAFGSFQPWMASLSFVRYLRVGKAIRVMRNHKLLASIFPNDDVTIKATLLIVKVIGVVMMTSAILYGVERGLTDGEGTGAFNEPG-------WQWHDAFYFTIVTLSTVG 172          
BLAST of mRNA_Ecto-sp13_S_contig10980.860.1 vs. uniprot
Match: A0A2R6XTC0_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XTC0_MARPO)

HSP 1 Score: 91.7 bits (226), Expect = 2.840e-17
Identity = 67/237 (28.27%), Postives = 118/237 (49.79%), Query Frame = 1
Query:   37 LVSCVFYIVGTYTASQYHYMVIAGEAVFAVVFFMDYVLSVTAEAMWLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKVARVIRNHRMLEKIGTF-TDVTVTACLLGLKILGLILMTTAIIYGTEEAFKENDEGKAFEDGGTIXXSGTMRWHDSLYFTIVTLSTVGYGDVLPVMAISRMLMIAVILAALTYVPFEVGNLIDIIGSRPKNRVGYSRHLVGNRLHVVLAMV 744
            L+S V Y+  TY     +  V   + V +V F  DY++ V  E + L Y++SF G++D  S+ PV   F  +    S +R L+     R++R   +  ++G F + V     LL +   G+I +   I++     + E D   +     T    G + + ++ YF IVT+STVGYGD+ P   + +++ I  I+ ALT +P ++G +  +   RP      +R +VG+R  ++   +
Sbjct:  181 LMSGVLYVYSTYRREAQNNWVSQTQNVISVAFLADYIMRVYCEPVRLYYLVSFWGVIDFLSVVPVILVFRSFPTVDSVIRLLQF---VRILRLFALSYRVGLFGSSVMQQIILLTIATFGVIFLDAGILH-----WVEYDVAPSVRKD-TCPEQGCITFWEAFYFLIVTVSTVGYGDITPKTVLGQLVTIVTIVVALTILPLQIGRITTLAYRRPYGGSYSARKIVGSRFLIISGSI 408          
BLAST of mRNA_Ecto-sp13_S_contig10980.860.1 vs. uniprot
Match: A0A2I8AAN7_9NOSO (Ion transporter n=3 Tax=Nostocaceae TaxID=1162 RepID=A0A2I8AAN7_9NOSO)

HSP 1 Score: 80.5 bits (197), Expect = 2.640e-14
Identity = 52/187 (27.81%), Postives = 101/187 (54.01%), Query Frame = 1
Query:  109 EAVFAVVFFMDYVLSVTAEAMWLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKVARVIRNHRMLEKIGTFTDVTVTACLLGLKIL----GLILMTTAIIYGTEEAFKENDEGKAFEDGGTIXXSGTMRWHDSLYFTIVTLSTVGYGDVLPVMAISRMLMIAVILAALTYVPFEVGNLI 657
            + +  ++F ++Y+L + +    + Y+ SF  I+DL +I P    F+  L  +SF+R LR  ++ R+IR    ++K   F++++    ++ ++IL     +I + + +IY  E        G                  D+ YF++VT++TVG+GDV P+  + R+L + +IL  +T +P++VG+LI
Sbjct:   57 DKIILIIFAVEYILRLWSAENKINYIFSFYAIIDLLAILP----FFIGLVDISFIRLLRWFRILRLIR---FIDKKFLFSNLSTADSIISIRILFTLFAIIFVYSGLIYQVEHPVNPQVYGTFL---------------DAFYFSVVTMTTVGFGDVTPISELGRLLTVLMILTGVTLIPWQVGDLI 221          
BLAST of mRNA_Ecto-sp13_S_contig10980.860.1 vs. uniprot
Match: A0A176WRD8_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WRD8_MARPO)

HSP 1 Score: 82.8 bits (203), Expect = 2.940e-14
Identity = 69/237 (29.11%), Postives = 114/237 (48.10%), Query Frame = 1
Query:   28 ITTLVSCVFYIVGTYTASQYHYMVIAGEAVFAVVFFMDYVLSVTAEAMWLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKVARVIRNHRMLEKIGTFTDVTVTACLLGLKI--LGLILMTTAIIYGTEEAFKENDEGKAFEDGGTIXXSGTMRWHDSLYFTIVTLSTVGYGDVLPVMAISRMLMIAVILAALTYVPFEVGNLIDIIGSRPKNRVGYSRHLVGNRLHVV 732
            I  L S + Y+  TY      Y++I  E V  V F +DYV+++ +  + L Y++S  G+VDL S+ P+    + W    +F   + L    RV+R   +L  IG  +  T+T  +  L +   G+I +   ++   E           + +       G + +  + YF IVT+STVGYGD+ P     R + I  ILAAL  +P +V N++ +   RP       + +VG+R  +V
Sbjct:  185 IAALTSVIVYVRSTYNYETPPYVIIV-ETVCGVFFLIDYVINLFSAPVRLYYIISATGLVDLLSVLPIA---FLWSKKKNFGVEILL--FLRVLRIMPVLTSIG-LSGATITQQIFRLVVYAFGVIFIAAGLLQWVEYRASTTQ----YREDNNCSPKGCLTFFGAFYFMIVTISTVGYGDITPKSDWGRAVAILAILAALIILPAQVNNIMQLASRRPYGGYFAVKKVVGSRFIIV 410          
BLAST of mRNA_Ecto-sp13_S_contig10980.860.1 vs. uniprot
Match: A0A4P9WVJ2_9FUNG (Uncharacterized protein n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9WVJ2_9FUNG)

HSP 1 Score: 82.4 bits (202), Expect = 3.990e-14
Identity = 70/233 (30.04%), Postives = 116/233 (49.79%), Query Frame = 1
Query:   55 YIVGTYT---ASQYHYMVIAGEAVFAVVFFMDYVLSVTAEAMWLTYVLSFEGIVDLCSIFP--VFGAFYRWLYSLSFVRYLRLGKVARVIRNHRMLEKIGTFTDVTVTACLLGLKILGLILMTTAIIYGTEEAFKENDEGKAFEDGGTIXXSGTMRWHDSLYFTIVTLSTVGYGDVLPVMAISRMLMIAVILAALTYVPFEVGNLIDII-GSRPKNRVGYSRHLVGNRLHVVL 735
            YIV TYT   A + H   +  +AV A+ F  DYVL +      L +  S   +VDL S  P  ++      L  + F+  LR+ + +R++R +R+L    +     +T  +L L  +  + ++ +I+   E   +E+           +  S T RWHDSLY+ +VT ST+G+GD+ P  + SR++++      + +VP + G L DI   S P  R  Y  H+  +  HV+L
Sbjct:  191 YIVLTYTIGNADRSHIEYL--DAVIAICFLADYVLGIYVAQDRLAFYFSLGAMVDLVSSVPPLIYILISDALPYIWFLGLLRILRASRILRTYRLLSFSESEERRELT--ILALSFINFVFLSASIVNALETLHEES-----------VPPSLT-RWHDSLYYIMVTFSTIGFGDLTPSSSTSRLVVMVXXXXXIIWVPIQTGRLADIYKSSSPFQRAAY--HVSSSNSHVIL 405          
BLAST of mRNA_Ecto-sp13_S_contig10980.860.1 vs. uniprot
Match: UPI000D1C4E20 (calcium-activated potassium channel subunit alpha-1-like n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C4E20)

HSP 1 Score: 81.3 bits (199), Expect = 9.350e-14
Identity = 60/205 (29.27%), Postives = 98/205 (47.80%), Query Frame = 1
Query:  121 AVVFFMDYVLSVTAEAMWLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKVARVIRNHRMLEKIGTF-TDVTVTACLLGLKILGLILMTTAIIYGTEEAFKENDEGKAFEDGGTIXXSGTMRWHDSLYFTIVTLSTVGYGDVLPVMAISRMLMIAVILAALTYVPFEVGNLIDIIGSRPKNRVGYSRHLVGNRLHVV 732
            +V F  DYVL + +E   L Y+ S  G+VDL S  P+F  F    Y  +      L +  R++R    + K+G   + +T    LL     G +++   II   E        G + +        G M + D+ YF IVT++TVGYGDV+PV    +  +I  I+ A+  +P +V  +  +  +RP      SR ++G+R  ++
Sbjct:   19 SVAFLADYVLRIYSEPARLFYIFSLSGLVDLLSAIPIFNVF---RYRKAGGDVYNLLQFLRIVRISSCITKLGMAGSTLTQQIILLIFSTAGAVVLVAGIIQWLEY------HGASEKTKRMCPLEGCMSFWDAFYFVIVTIATVGYGDVVPVTIQGQAAIIITIMIAVAILPIQVSRISTLAYNRPYGGTFNSRKVLGSRFLII 214          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10980.860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXB0_ECTSI8.290e-16090.38Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4I5_9PHAE6.730e-13887.98Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQ48_9PHAE8.380e-6248.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CM81_9STRA3.370e-3834.56Ion_trans domain-containing protein n=1 Tax=Tribon... [more]
D8LEK1_ECTSI4.750e-3845.30Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A2R6XTC0_MARPO2.840e-1728.27Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A2I8AAN7_9NOSO2.640e-1427.81Ion transporter n=3 Tax=Nostocaceae TaxID=1162 Rep... [more]
A0A176WRD8_MARPO2.940e-1429.11Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A4P9WVJ2_9FUNG3.990e-1430.04Uncharacterized protein n=1 Tax=Caulochytrium prot... [more]
UPI000D1C4E209.350e-1429.27calcium-activated potassium channel subunit alpha-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10980contigEcto-sp13_S_contig10980:3..4613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score456.4
Seed ortholog evalue8.6e-126
Seed eggNOG ortholog2880.D7FXB0
Model size780
KEGG koko:K04936
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG free text desc.large conductance calcium-activated potassium channel activity
EggNOG OGsKOG1420@1,KOG1420@2759
Cds size780
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10980.860.1prot_Ecto-sp13_S_contig10980.860.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10980 3..4613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462566.9153736-CDS-Ecto-sp13_S_contig10980:2..1401681462566.9153736-CDS-Ecto-sp13_S_contig10980:2..140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10980 3..140 -
1681462566.9275415-CDS-Ecto-sp13_S_contig10980:913..9551681462566.9275415-CDS-Ecto-sp13_S_contig10980:913..955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10980 914..955 -
1681462566.9374409-CDS-Ecto-sp13_S_contig10980:1319..13651681462566.9374409-CDS-Ecto-sp13_S_contig10980:1319..1365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10980 1320..1365 -
1681462566.9466906-CDS-Ecto-sp13_S_contig10980:1917..20871681462566.9466906-CDS-Ecto-sp13_S_contig10980:1917..2087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10980 1918..2087 -
1681462566.9560115-CDS-Ecto-sp13_S_contig10980:2536..26451681462566.9560115-CDS-Ecto-sp13_S_contig10980:2536..2645Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10980 2537..2645 -
1681462566.9657035-CDS-Ecto-sp13_S_contig10980:3488..35951681462566.9657035-CDS-Ecto-sp13_S_contig10980:3488..3595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10980 3489..3595 -
1681462566.975185-CDS-Ecto-sp13_S_contig10980:4445..46131681462566.975185-CDS-Ecto-sp13_S_contig10980:4445..4613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10980 4446..4613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10980.860.1

>prot_Ecto-sp13_S_contig10980.860.1 ID=prot_Ecto-sp13_S_contig10980.860.1|Name=mRNA_Ecto-sp13_S_contig10980.860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
MAACMLFTSITTLVSCVFYIVGTYTASQYHYMVIAGEAVFAVVFFMDYVL
SVTAEAMWLTYVLSFEGIVDLCSIFPVFGAFYRWLYSLSFVRYLRLGKVA
RVIRNHRMLEKIGTFTDVTVTACLLGLKILGLILMTTAIIYGTEEAFKEN
DEGKAFEDGGTIEDSGTMRWHDSLYFTIVTLSTVGYGDVLPVMAISRMLM
IAVILAALTYVPFEVGNLIDIIGSRPKNRVGYSRHLVGNRLHVVLAMVPG
KDDGEGEAGF
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mRNA from alignment at Ecto-sp13_S_contig10980:3..4613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10980.860.1 ID=mRNA_Ecto-sp13_S_contig10980.860.1|Name=mRNA_Ecto-sp13_S_contig10980.860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4611bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10980:3..4613- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCGTGCATGCTCTTCACCTCCATCACGACGTTAGTGTCGTGCGT ATTCTACATCGTGGGCACCTACACGGCGTCCCAGTACCACTACATGGTGA TCGCGGGTGAGGCTGTCTTCGCCGTCGTCTTTTTCATGGACTACGTCCTG TCGGTCACCGCCGAAGCGGTAAGTGGTTCACCGCGGCCGTGATTTTGGCG TACCATGTGGTACCGCCCCTCTCTACCCCCCCTTCCCATCTTGATTTTGC TCTCGGCACCTTTCCCGCGGGACAAATTTGCAACCACCACCACCTCGCAC CCGTTGTTTGATTTTTCCCGCCCAACTTGTCTTGGACGCCTGAAGCCACC CCTTTCCGTAGACTCCTGTGTGTACCACCCGGGTGCCTTACGGGAGAGTG CTCCTCCTTAGCGGCGCTTGCCTGTGTTGTGTTGTCGTCGCGAGACAGAG TGTCCAGTTCGGCAATCTCTTCTTCCTCCGCAAACGTTTTTGTGGGGATT GATCTTTCTATCGACCACCGAGCGCCTCTCAATCATTATGTACTTGTGAC CTTGACTTACAACCCGAATCGTTACGTAACGCCCCTGATGAACACGTAGA TACCTGTCGCGTTTGCGCATTAACGGAGTCTTACCATCTGGGCATTTCTA CACAACGTCGCAAACCTTCTGCGTAGAGTATCACACGTCGGAGAGCTACA CATCTGTACGTGGTTGTATTCTTCGTTGTGGCTTGCACAGGTCTTGTGAG CACCAAAACATGTGACTTCTGCACGGACATACGTTGGGCCTACACGGCAC CATACGCTTGTAGGTACCCCAACAGCCAAGTTCGATACGTGCTTCACGAT GCCCGTCGTTTAGAGGTTGTTCACGACCCTCCTTACATATTTTTTCATTT TTGGCACGTGCTGCTGCCCCCTCTGTCGCGCGCAGCGTCTCAGTCGATTG GTCGCGCCTTGCTTACATTTTCTTTGTTACCCGAACAACTCCGCGAAAAC GGCAACCACGGCAACAAGATGTGGTTAACATACGTCCTGAGCTTCGAGGG CATCGTAGACCTCTGCAGCATCTTTCCTGTCTTCGGCGCGTTCTACAGGT GGCTCTACAGCCTTTCTTTCGTCAGGTGAGAAAACGAAGTTGTAGGTTTC GCTTTTTCAGGCAACAGCAAAACGAGGTATACCCCCCCGCCCCCAAGCTA GAAGTCTTCTGTAGAACACCTGCCCCTTGCTGCTGTTTGCACGGGCGATT GCGTGGACTCGCGAACGAAGCAGACGTAGCTCTGCGTAAGGGTGAAGACC GCGCAAAGAGTAATCGACGCGACGAAGGCGCCCGACCTTGTCGTGGATGG GAAATCATCCCTGCCGCGCTTGGTGTTGAAACGCCGCTCTCGAGGTGCGG TGCTGCTTTGCTTCTCCAACTCGACCTCGGCTTCCGTCGAGCACAAAACA ACAATAAAACTGGAATGGAATACGTGTTCATTGCCTACCTCCGCCGGAAT ACGATCGTCGTCCGTGACGCCATCACCATGAAGTATGCATACGTTAAGAA TGTGCACCCCTGGAAAAGTGAAAAAGATCCGCATCGGGTGCTTACAGCGA TCGCCTACCCATCAATTTGTTGTTCGCATTTTGTGTCGCGCCCTCGTTGT TACATGTACCGTTGTCCCTAACCTTTTGGATTCGTATTTTGGTCGTGTTC CCCGACACATATATTTGGCAGTCCCGGCTTCGAAACGGCCCGAAGGCAGG TTATACGGAAACCCAGCACCCCATGACCATAATGGGTAGGCGGCACAACC TTTCATTCCGCGGGTCAATCCGGTGCAACATGCGGAAGACCGGTATTTTC CATTGTTTTATAGCGGATGGATGCACACAACACATGTTGGACGATCCGGA TATAGGTCACCCTCGCCCTCGTCCTCGCCACACTCCGATACGCGCCCCCC CCCGGCCGCCCGGTGCAGATACTTGCGACTTGGGAAGGTGGCCCGCGTGA TTCGGAACCACCGGATGCTCGAGAAGATTGGTACTTTCACCGATGTGACC GTGACCGCGTGCCTGCTGGGGCTCAAGGTAATGTTCGCTCGCCCTCCCGC GACGTTGCCGGCTAAAATTATGCCGATCCCCGATTGTGCAGCAGCCGTGT GCGTGTGTGTGTTTGTCATGCCCTCTTCCCCTTCGTTTCTGACAGTTTTG GCGCTGGCTGACTCTGATTTTGTTCGTCGTTCAAGACCCCTCGAGCGGAA CAAATCTTGTAGAAGCACGTTTCTCTGCCGACGGCCTTTCGATTCCCTTC CCCGCTCTGTCGATTTGCTTGCTGTTCCTACACGGGCGCTCGGGTTGGTT TGCATAATGTAGCTCGCTTGTCGACATTTTGGAGAGACGGCACGACTGTA AACGTAGCGTCGTTTTGCACCACAGCAGTGTTTTTTCAAGACACTTTTTG CGGGTGTCCCCAAAACCACGGACGATTCTTCTTTTCTCGTGTTTTTCTTG GGTGCCTTGCGGTCGCTTCGAAACAGATATTGGGCCTGATCCTGATGACG ACGGCCATCATCTACGGGACGGAGGAAGCCTTCAAGGAAAACGACGAGGG TAAAGCCTTCGAGGACGGTGGCACCATTGAAGATAGCGGCACCATGCGGT GGCACGACTCCTTGTACTTCACGATCGTGACGCTGTCTACGGTGGGGTGA GCACAGGCGGCGGGGGTAGCAAGTAGCGTGGTTGTCTTGTTGCGGTGTCA ATTTTCACGCCAATTCCACCCAACCACCGCCTGGTACGTCGTGAGGTGCA GATTTGCACGCCGAGCGATCTGGGGCATGGTGGTGTGTAAACGCATTTGT TCTTTGTTTGCGTGGCGTGTTCACCCATTTGTTCTTTGTTTGCAGTAAGT CATTGTTTGTATCTTTTTCAATATCTTATTTGCTCCACGAACAGCCACCT GGGACCCCCCCTCCCATGACAAAGAATAGCTAGCAGGAGACGGTAGCGAT GCTGAGGGTATTAGAAGTGTACTGAAAAGACGGCAAGTCGTATCGATAGG ATACATGGATAGAGAACACATTTTGTAGCCATGTGGCCATCGGTGATCGG TCAAGTAGGAACAATCGTCCGTTCTATCGAGGACCCGTGGTCGATCGTCT AACTAAGGGATGCAAAACGAGAGTACGCCCCCCACCCCCACACCCCTTGC CGCCGACGCCTCCCCCCCCAACGCGCCCCGTCTATCAACAAATAACAGGT ACGGGGACGTGTTACCCGTGATGGCCATCAGCAGGATGCTAATGGTGAGA CTACCCCCTAGTGTTGGCGAAAGTTCAACCAGGGCGCAAGCGTGGTACAA GCACACTCCAAAACGTGGCGCACACTCGCGTGACTTTTGCCTCCGCCGTG AGGTTTTTGGTTTACTAATGGCGATCACACTTCACAACTTATGACGTGTC GTTATCGTTGATCGTATCAGGGAACGATACCTGCCGTTCTTCTTGTCGCT GTATGTACGATGGAAAAAATTGTGCTTCTTCTGCCGCTTCCGCTGCTGCT TCCGCTGCTTCTGCTGCAGCAGTTGTTGCTGCTGCTTTAGGTGCTACCTT GTAAGTCCTTCGTCGCTGCCGCTTTTGCATCTTCTGTGGTTGCGCCTGTT CTGTACAGATCGCGGTGATTCTGGCCGCCCTGACGTACGTCCCGTTCGAG GTGAGAGGGCGGTTCAAGAGACGGAGGCGCTCTGGGCGGGGGTGCGGGGC GGGGGTGGACGGCATTCTCTTCAAGAATGAAGCCCCGTTTTTTTCGCACG TGGTGGAGAGGCAACTGAGGTGTTGCATCGCGTGGCCAGTGCGTGCTAGA GTTTTTGCACTGGGTTGAGTGCGCTGTCCTGTCGCAGTCGGTTGTTTGCT ATTTCCTGCTGCTCTCATCAGGGTGGTTCATAGCGCGCGTGATGCGTTGG TTGATCAAGGCACCCAAGTCCACGGCTAAGCCGGGAACCTGATCGACATC ATCGGCAGCCGTCTGGTTCATGCTCTCCTTGTTGTGAACACTCTAACCAC AGTTGCCCCGAAACGATGATGTTCCACGTACTACCTACGAACACAAAGCC GTGGGAAAGCGGCTGTTGCATGCTTATCGGCAGGCACCTGAGTTGCAGGT TCGCCCGTGCCATGTTGGCTGCATTGGGGGCAGCAGACCGGCCGGTCGGC CAAAGAACGCCCCCCCGGGCTACATGAAGCATATGTTTGGGGCGGCGGGG GGAGGGGCGTACTCAGGATTGCATGCCTTAGTAGTTAGACCAGGCGTCTT CGAGAAAACGAAGTATTGTTCCCATTCACTTTCCCTCTAGGCAGACGTAT TTTCTCCCCCCAGGCAAACCTACCCCTACACATGCGGTGCGTAGGTTTGG AAAGCTGCGACCCCGTGTCGGCTGAACCAAAGCCCACCATAATGTGTTGG TGCTGTCGATATGAATGCGGCAGGTCGGGAACCTGATCGACATCATCGGC AGCCGACCCAAGAACAGGGTGGGATACTCGAGGCACCTGGTCGGCAACAG ACTCCACGTGGTGCTCGCCATGGTTCCCGGGAAGGACGACGGCGAGGGCG AGGCGGGTTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10980:3..4613-

>mRNA_Ecto-sp13_S_contig10980.860.1 ID=mRNA_Ecto-sp13_S_contig10980.860.1|Name=mRNA_Ecto-sp13_S_contig10980.860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10980:3..4613- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCGTGCATGCTCTTCACCTCCATCACGACGTTAGTGTCGTGCGT
ATTCTACATCGTGGGCACCTACACGGCGTCCCAGTACCACTACATGGTGA
TCGCGGGTGAGGCTGTCTTCGCCGTCGTCTTTTTCATGGACTACGTCCTG
TCGGTCACCGCCGAAGCGATGTGGTTAACATACGTCCTGAGCTTCGAGGG
CATCGTAGACCTCTGCAGCATCTTTCCTGTCTTCGGCGCGTTCTACAGGT
GGCTCTACAGCCTTTCTTTCGTCAGATACTTGCGACTTGGGAAGGTGGCC
CGCGTGATTCGGAACCACCGGATGCTCGAGAAGATTGGTACTTTCACCGA
TGTGACCGTGACCGCGTGCCTGCTGGGGCTCAAGATATTGGGCCTGATCC
TGATGACGACGGCCATCATCTACGGGACGGAGGAAGCCTTCAAGGAAAAC
GACGAGGGTAAAGCCTTCGAGGACGGTGGCACCATTGAAGATAGCGGCAC
CATGCGGTGGCACGACTCCTTGTACTTCACGATCGTGACGCTGTCTACGG
TGGGGTACGGGGACGTGTTACCCGTGATGGCCATCAGCAGGATGCTAATG
ATCGCGGTGATTCTGGCCGCCCTGACGTACGTCCCGTTCGAGGTCGGGAA
CCTGATCGACATCATCGGCAGCCGACCCAAGAACAGGGTGGGATACTCGA
GGCACCTGGTCGGCAACAGACTCCACGTGGTGCTCGCCATGGTTCCCGGG
AAGGACGACGGCGAGGGCGAGGCGGGTTTC
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