mRNA_Ecto-sp13_S_contig1098.857.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1098.857.1
Unique NamemRNA_Ecto-sp13_S_contig1098.857.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1098.857.1 vs. uniprot
Match: D8LEE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE4_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 2.280e-97
Identity = 165/211 (78.20%), Postives = 169/211 (80.09%), Query Frame = 1 
Query:  232 MMDCVDELMELDCSDMSVCGNDCTVEDSNPRIPSDSIILPVNNFGANYLQLSVCSKGVSASKLTHFGQVSMERCSEDDFRVCDLAIAPRALTAVAFPPDTTYLRVQQCVLVETAXXXXXXXXXXXXXXXXXEAWECLEDPAPAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQQPRICAPKMEEHFQQSGEHFLDPRWEILNN 864
            M+DCVDELMELDCSDMSVCGNDCT E SNP                                      VSMERCSEDDFRVCDLAIAPRALTAVAFPPDTTYLRVQQCVLVETAXXXXXXXXXXXXXXXXXE WECLE+P PAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQ+PRICAPK+EEHFQQSGEHFLDPRWEILNN
Sbjct:    1 MIDCVDELMELDCSDMSVCGNDCTFEYSNP--------------------------------------VSMERCSEDDFRVCDLAIAPRALTAVAFPPDTTYLRVQQCVLVETAXXXXXXXXXXXXXXXXXEVWECLENPVPAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQEPRICAPKLEEHFQQSGEHFLDPRWEILNN 173
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BLAST of mRNA_Ecto-sp13_S_contig1098.857.1 vs. uniprot
Match: A0A7S2CVA0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVA0_9STRA)

HSP 1 Score: 198 bits (504), Expect = 3.190e-57
Identity = 117/287 (40.77%), Postives = 157/287 (54.70%), Query Frame = 1 
Query:   10 GRNAVLLVGVNALKMVAASAAFDECDSASRTACETAFLDCKLSTPASNKDGICACAAIFFGACLATAGCAAADEMMDCVDELMELDCSDMSVCGNDCTVEDSNPRIPSDSI-ILPVNNFGANYLQLSVCSKGVSASKLTHFGQVSMERCSEDDFRVCDLAIAPRALTAVAFPPDTTYLRVQQCVLV---ETAXXXXXXXXXXXXXXXXXEAW--ECLEDPAPAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQQPRICAPKMEEHF---QQSGEHFLDP 843
            GR   LLV       VA S+A   C+  +   C   + +C+ +  A +    C CA   +G CL  AGCAA D M +CV  LM  +C DMSVCG++C V   N  I  D+  +LPVNNFG NYLQ SVC +G ++ +L+ F QVSMERC E  F VC   I P   TA+A   + +Y+R+++CV V   E A                 + +  ECL++P P EYYGT   WPS +DV+Y+ A  CE D  C GS+C +   P  CAPK  +HF   + +G  +LDP
Sbjct:    5 GRTLALLVAA-----VAVSSAERTCNMRAEQKCIQEYEECRQTGLAESSVTECECATELYGLCLRKAGCAA-DRMTECVSRLMGENCEDMSVCGSNC-VGQGNHLIDMDTARVLPVNNFGENYLQFSVCHQGPNSHRLSKFSQVSMERCDESSFHVCPYWIPPNTFTALAISANASYIRMERCVYVDYNEDAPTPSPTESGTADDSSGDDNFVAECLKEPKPVEYYGTRTLWPSFIDVEYAGAMYCESDEQCRGSYCDTNHVPPKCAPKATKHFDVGENAGRDYLDP 284
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BLAST of mRNA_Ecto-sp13_S_contig1098.857.1 vs. uniprot
Match: A0A7S2SLL9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLL9_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.450e-54
Identity = 99/247 (40.08%), Postives = 137/247 (55.47%), Query Frame = 1 
Query:  106 CETAFLDCKLST-PASNKDGICACAAIFFGACLATAGCAAADEMMDCVDELMELDCSDMSVCGNDCTVEDSNPRIPSDSIILPVNNFGANYLQLSVCSKGVSASKLTHFGQVSMERCSEDDFRVCDLAIAPRALTAVAFPPDTTYLRVQQCVLVETAXXXXXXXXXXXXXXXXXEAWECLEDPAPAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQQPRICAPKMEEHFQQSGEHFLDP 843
            CE  ++ C L   PA++    C CAA F+GACL  AGCA  + MMDC+DE M  DC DMSVCG++C    ++  I + + ILPVNNFGANY+Q SVC  G+    L+ F  V M RC +  F+VC   I PR  T +A P ++TY+++++ V ++                        L +P P EYYGT   WPS +D++++    C  D  C GS+C     P  CAPK  +HF +S   F+DP
Sbjct:    7 CEQDYMLCILYRGPANDPPTACMCAAEFYGACLRDAGCAP-ERMMDCIDEHMLQDCQDMSVCGSNCIGNGNSYDIRNQARILPVNNFGANYIQFSVCDLGIDLDILSRFETVRMRRCDDATFKVCPFWIPPRTFTGLAIPKNSTYIKMERTVYLQKRLADEWNVSWTRTDDFVAAV---LRNPPPEEYYGTEEMWPSTIDIEFAENHFCSSDEQCLGSYCDRSHVPPKCAPKSIKHFMRSAASFMDP 249
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1098.857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEE4_ECTSI2.280e-9778.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CVA0_9STRA3.190e-5740.77Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SLL9_9STRA1.450e-5440.08Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1098contigEcto-sp13_S_contig1098:12069..16129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1228
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001990.1
Cds size816
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1098.857.1prot_Ecto-sp13_S_contig1098.857.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1098 12120..15768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462566.7430365-UTR-Ecto-sp13_S_contig1098:12068..121191681462566.7430365-UTR-Ecto-sp13_S_contig1098:12068..12119Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1098 12069..12119 +
1681462566.8245237-UTR-Ecto-sp13_S_contig1098:15768..161291681462566.8245237-UTR-Ecto-sp13_S_contig1098:15768..16129Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1098 15769..16129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462566.7521684-CDS-Ecto-sp13_S_contig1098:12119..121481681462566.7521684-CDS-Ecto-sp13_S_contig1098:12119..12148Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1098 12120..12148 +
1681462566.7601478-CDS-Ecto-sp13_S_contig1098:12686..127751681462566.7601478-CDS-Ecto-sp13_S_contig1098:12686..12775Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1098 12687..12775 +
1681462566.7684562-CDS-Ecto-sp13_S_contig1098:13002..131541681462566.7684562-CDS-Ecto-sp13_S_contig1098:13002..13154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1098 13003..13154 +
1681462566.7795773-CDS-Ecto-sp13_S_contig1098:13730..138441681462566.7795773-CDS-Ecto-sp13_S_contig1098:13730..13844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1098 13731..13844 +
1681462566.7964876-CDS-Ecto-sp13_S_contig1098:14492..147921681462566.7964876-CDS-Ecto-sp13_S_contig1098:14492..14792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1098 14493..14792 +
1681462566.8083053-CDS-Ecto-sp13_S_contig1098:15636..157681681462566.8083053-CDS-Ecto-sp13_S_contig1098:15636..15768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1098 15637..15768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1098.857.1

>prot_Ecto-sp13_S_contig1098.857.1 ID=prot_Ecto-sp13_S_contig1098.857.1|Name=mRNA_Ecto-sp13_S_contig1098.857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=272bp
MVAASAAFDECDSASRTACETAFLDCKLSTPASNKDGICACAAIFFGACL
ATAGCAAADEMMDCVDELMELDCSDMSVCGNDCTVEDSNPRIPSDSIILP
VNNFGANYLQLSVCSKGVSASKLTHFGQVSMERCSEDDFRVCDLAIAPRA
LTAVAFPPDTTYLRVQQCVLVETAAAATSESDDDGGGQEEEEAWECLEDP
APAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQQPRICAPKM
EEHFQQSGEHFLDPRWEILNN*
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mRNA from alignment at Ecto-sp13_S_contig1098:12069..16129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1098.857.1 ID=mRNA_Ecto-sp13_S_contig1098.857.1|Name=mRNA_Ecto-sp13_S_contig1098.857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4061bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1098:12069..16129+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGTATCGGGCGAAATGCTGTTCTCCTGGTTGGCGTCAACGCGCTGAA
AATGGTGGCCGCGTCTGCCGCCTTTGACGAGTGAGATCTTGTCGTTTCCT
CGACGGACAGGAAGATAAACATGTATTTGTTGTATGTCATGCGTAGTCGA
TGTTGGACTCGTTCTGTAACTGCACCCCGTTACATACATAGATGTACACA
AACATATTGCTGTATCATTCAACCAAGTTGATTTAAATTTAGAATTTGAA
GCCCGCATACACCCTCATTTCTGTCTCGGTTTTAGGGCACACTCGGGCGA
TGCCTCTTGTGAAGGTGTGTAGGTGATGTGATGAGAAACGGAATGGACCC
TGGCACGGGCATGTGTGCGCAGACATGTAGTTACGAGCAAGTGAGCTCTG
ATAGCGCCGTACTATCGTACCATGTACACTAGGGACAAAGGTATCATATC
CTAGTTTGTCTCGCTCTCGGCCTTGTCTGCCGGTACAGATTTAACAACGG
CACAGAAAGACCATGCAAGTATCCGCGGACACCAGGCAGCAGTTGGTTGT
TGTTCTTCGCCTTTGCTCGGTCGTTTGCACGATTTCAACCCGTGTTCTCC
TCGCAATCGATCGTCCAGATGCGACTCTGCAAGCCGAACGGCTTGCGAAA
CTGCGTTTCTGGACTGCAAGCTGTCCACCCCGGCGTCGAACAAGGACGGA
ATATGTGGTATGTGTATGTATGTAGGCGGCAGACAAAAAGCTGCTTCAAT
GGCAACCAAACGAGGTTAAGAGACGATCGATCCAGTTCGGAAGGTTGGCT
CGCGCACATCACTGGCCACACCCAAGGTCATCGGTAGAGGGCCGCCATCC
GAGCTATCCCCGCCGCCTCCTACGTTCCTACCACATCACTCAACGGTTTG
ATCCCCCGGCTTTGCAATTGAATGTGTTTCCCAGCGTGCGCCGCTATCTT
CTTTGGGGCTTGTCTGGCCACCGCGGGATGCGCTGCAGCAGACGAGATGA
TGGATTGCGTCGATGAGCTGATGGAGTTGGATTGTTCGGACATGAGCGTG
TGCGGGAATGACTGCACCGTCGAGGACAGTAACCCGGTAAGCAGCTGCAT
AGTACCCGATCGTAGCCATACTGCTAGAGTATGTTGACAGTGTGTTGAAA
AGGCGTGGCTGTGAGACTTGTTTGTCAACGAAATATTTCGACATCTATTT
GTAGGATATCTCCAACGCCTCAACAAGTTTTCCCCGAAGATGCTTCGTTG
TACAGTAGATGTAATAGAAGTACCTCATCATCCCGTGATCTTTTAGCTTC
AGGGCATCTTGCACGGGCAGAGTAAAAATAATGTTGGTAGACATTAGCGG
GAAGAACGATTCCTGTATATTGCCCAAGAGCCGCGGCTAGCGGCTGGCTC
AGCGACGAAGGGCGCCTTTTTCAGAAATTCGTTTTCTCTATTGAAAACGC
AGCATCAGCAGAGACTGCGGAGCCACCATGCATGTGCAATCTCGAGGCTT
CATCATTTTGATATAGCAGCACTGGACAAGTCGCCTGTATGGATTACCGC
GAATGCTTTGTTCCCGTTCGCACCCGTAAAAGGTTTCCACCTTCTACTGT
CGAAGCCAAGTTCAGGCTGATACCCAGCCGCTGTTGTCTCGCTGCCGCTC
AACTTCGGACAGCGTATCCCGAGCGATTCGATAATTCTCCCGGTCAACAA
CTTTGGCGCCAACTATCTACAGCTGAGCGTTTGTTCGAAGGGCGTGAGCG
CCTCCAAGCTCACCCATTTTGGCCAGGTATTTGTGAGTTTGCTATGGTTC
GGACAGGTCGAGGGTAGCTTGTTCTCAGGGAGCTTACAAACATACATACA
TTCAGTCTATTTACCGTGATGTGATGGTTTGGCGTGCTGTCATGTGGATG
GATGGCCAACGGTGGGGTGCTTTGAAGATCGGTGTATGCATGTGTGGAAT
CGTCGAATGCATTTCGCGCATGTACGCTGCTACCTGTCTTTCTAGTCTGT
GTAACGAAGGGCAGACTGGTTGTTGGTGTTCCGGGACTCGGGATTTTCGG
AGAGCGTGTGGCGCGGAAAGCCGAGAGTGCAGTCGGCCCCACCTTTCTTT
TCCTACCGCCATGTGCGTCTCCAACCTCGATGTGGCCCCTCTAGAGCGAC
GTGTAGCTATTTAGTTGATATAGGGATCAAGAAAGGAAATGAATGAGTTG
CTCGAAGGAAATTAACGAGCTGCTTTCAAGGTGGAAGCCAAACAAACCTG
CGGTCGGAAGAGGCGGTGGATGGAGCAGCATCCCGTCGCTACGGACACAC
GGTAAACGATACAGCGGTACGGTGAGAACGACAACACGATAACCCCCCCC
CCAGAACCACCCTGCGGAGTTCTCGCTTACCACCACCACCACCACCACCA
CCACCACCACTACCACCATCACAGGTCAGCATGGAGAGGTGCAGCGAGGA
CGACTTCCGCGTGTGCGACCTCGCGATCGCGCCGCGCGCCCTGACGGCGG
TAGCCTTTCCCCCAGACACCACCTACCTCCGCGTGCAACAGTGTGTGCTG
GTGGAGACGGCAGCGGCGGCTACCTCAGAGAGCGACGACGACGGCGGGGG
ACAAGAGGAAGAGGAGGCGTGGGAGTGTCTAGAGGACCCCGCGCCGGCGG
AGTACTACGGGACGCCGTATCATTGGCCAAGCGCCGTGGACGTCGACTAC
TCCGCGGCCGCTTTGTGCGAGAAGGTATGAATAGTGCGGCGCCGAATAAA
TCGTGTTCGTTCGTAGACGTCCAAGTAGGTTGCCTGAAGAGGATATTGTT
CACCTTGTTGGTCAGGAGGGAGGTTGGCCGGGTGCACCATGACTTCCTAC
AGTATTGGGGGAAAATTGTCTGTTTCCGTTCGAGGTGCGGGGGAAGCCCC
TGGTGTTCCTTTTTTTTCGGTCTTGTGTTTTCTCCACCATCGTGTGGTTG
GTTTTTTGTTGCAAGGAAGCCCGCAAGGTAACGGACGGTGGATTGATGGA
CTGGGAACATCATCTTCGTCCGTCGTTTCCATGATCGAGTTGAGTGCCAA
CGGAAGCCTCCACCAAACGCAACAAGATTAGTCTAGTGAGCAGGGTGAGA
CACAAATCGGGATACAGTGGGGGTCCCTATGTAGTGCCGGTATGTGCCCA
GAAAACTCACCGGCATTATAGTACCGGACAGGCGCTACTGAAATTCAGTG
TGTGCCCGTCGAAACACCGGCCGGAACTAAACCGGTCATTGGCACTATAC
AACCGGCACTAATCAGGGACCATCGCTGTACGTGTAATCGGGACAACGAT
CTGACGCAACATGGCGACCTAACAATGAACTGACCTCCCTCTGGGGTCAT
GCCGCCTCAAAACCGGGACCCCCAGTTGGAATCTGTTCGATCGGTCAAGA
GGCGGAACATCTGGTACGGAGGACTCGCGCACCAAGTTGTCAAACTCCGG
TTGGCCTGCCAGTCCCATCCCTCAACCATCTTCCTCTCAACCCGCCCTCC
CGGGCAACCGCACTTCCGAAACGCCGTATGTCCGATGTACTTGTACGTGC
AACTTTCACCGCCAACAGGATAGCCACTGCCCCGGCTCGTTCTGCTCGTC
ACAGCAGCAGCCAAGAATTTGTGCGCCAAAGATGGAAGAGCACTTTCAAC
AGAGCGGCGAGCATTTCTTGGATCCACGCTGGGAAATCCTCAACAACTAG
TTTTTGCCTTTTCCCCGCTTTACTTTTCCTTGCTCACCCTGGTTGTTGTT
AGACTACATGTTGTCGTAACATTACAAAGCACGGAGCTTCCCCCTTTTCG
GTGTTGGAGTTGGTGGTGGTCTGGTGTGTTAGCGTGTGCCAAGAATAGGT
GGTAGGTGGGGACAACGGTTGTTGCACCTTCTACCGTATGCGTTGATCGG
ATCGGAGGAGTACTTCCGTACTTTGGTCCGACCACCCCCGAATCGAAACT
GTGCGCTCACGCCAACTGTGTTCTTTTAGGTTAGCGCATTCCGTGGACGC
TTTGAGACTGCTGTCGTTTGTCAGTCCACTGTCAGTCGTACGCTCATGTA
GCCTGTGAGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1098:12069..16129+

>mRNA_Ecto-sp13_S_contig1098.857.1 ID=mRNA_Ecto-sp13_S_contig1098.857.1|Name=mRNA_Ecto-sp13_S_contig1098.857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1098:12069..16129+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCCGCGTCTGCCGCCTTTGACGAATGCGACTCTGCAAGCCGAAC
GGCTTGCGAAACTGCGTTTCTGGACTGCAAGCTGTCCACCCCGGCGTCGA
ACAAGGACGGAATATGTGCGTGCGCCGCTATCTTCTTTGGGGCTTGTCTG
GCCACCGCGGGATGCGCTGCAGCAGACGAGATGATGGATTGCGTCGATGA
GCTGATGGAGTTGGATTGTTCGGACATGAGCGTGTGCGGGAATGACTGCA
CCGTCGAGGACAGTAACCCGCGTATCCCGAGCGATTCGATAATTCTCCCG
GTCAACAACTTTGGCGCCAACTATCTACAGCTGAGCGTTTGTTCGAAGGG
CGTGAGCGCCTCCAAGCTCACCCATTTTGGCCAGGTCAGCATGGAGAGGT
GCAGCGAGGACGACTTCCGCGTGTGCGACCTCGCGATCGCGCCGCGCGCC
CTGACGGCGGTAGCCTTTCCCCCAGACACCACCTACCTCCGCGTGCAACA
GTGTGTGCTGGTGGAGACGGCAGCGGCGGCTACCTCAGAGAGCGACGACG
ACGGCGGGGGACAAGAGGAAGAGGAGGCGTGGGAGTGTCTAGAGGACCCC
GCGCCGGCGGAGTACTACGGGACGCCGTATCATTGGCCAAGCGCCGTGGA
CGTCGACTACTCCGCGGCCGCTTTGTGCGAGAAGGATAGCCACTGCCCCG
GCTCGTTCTGCTCGTCACAGCAGCAGCCAAGAATTTGTGCGCCAAAGATG
GAAGAGCACTTTCAACAGAGCGGCGAGCATTTCTTGGATCCACGCTGGGA
AATCCTCAACAACTAG
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