mRNA_Ecto-sp13_S_contig10979.855.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10979.855.1
Unique NamemRNA_Ecto-sp13_S_contig10979.855.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10979.855.1 vs. uniprot
Match: D7FU73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU73_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 8.610e-25
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:  112 NTRLSMFLNSFDFANNVPNSCYLHESSSRSRRPPPSLARGVILLPCIVLIHD*YTELD 285
            NTR SMFLNSFDFANNVPNS YLHESSSRSRRPP SLARGVILLPCIVLIHD YTEL+
Sbjct:    3 NTRSSMFLNSFDFANNVPNSYYLHESSSRSRRPPLSLARGVILLPCIVLIHDEYTELE 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10979.855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU73_ECTSI8.610e-2591.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10979contigEcto-sp13_S_contig10979:1891..2986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1096
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462566.539256-UTR-Ecto-sp13_S_contig10979:1890..20161681462566.539256-UTR-Ecto-sp13_S_contig10979:1890..2016Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10979 1891..2016 +
1681462566.5587845-UTR-Ecto-sp13_S_contig10979:2160..29861681462566.5587845-UTR-Ecto-sp13_S_contig10979:2160..2986Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10979 2161..2986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462566.5493484-CDS-Ecto-sp13_S_contig10979:2016..21601681462566.5493484-CDS-Ecto-sp13_S_contig10979:2016..2160Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10979 2017..2160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10979.855.1prot_Ecto-sp13_S_contig10979.855.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10979 2017..2160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10979.855.1

>prot_Ecto-sp13_S_contig10979.855.1 ID=prot_Ecto-sp13_S_contig10979.855.1|Name=mRNA_Ecto-sp13_S_contig10979.855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MFLNSFDFANNVPNSCYLHESSSRSRRPPPSLARGVILLPCIVLIHD*
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mRNA from alignment at Ecto-sp13_S_contig10979:1891..2986+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10979.855.1 ID=mRNA_Ecto-sp13_S_contig10979.855.1|Name=mRNA_Ecto-sp13_S_contig10979.855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1096bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10979:1891..2986+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGCACATTTGTTTGTCTTTGCTTGGCTGGGAACGATCGACGCGTGTCA
GCAGTAGCAGCAGCAGCACCAAGAAAGCGTGACATGCCAAGAGGAGATTA
TCCAACGTGTAAATACGAGGTTGTCCATGTTCCTAAATAGTTTCGACTTT
GCCAACAACGTTCCCAACTCTTGCTACCTCCATGAATCATCATCTAGATC
TAGACGCCCCCCTCCCTCTCTAGCGCGCGGCGTGATTTTGCTTCCATGTA
TAGTCCTCATTCACGATTAATATACAGAGCTTGATAACGCACGCCCACAT
GACGCAAACTTTGCGGGGCTGAGAAGGAAAAGCAAACAAAGAGTGACGCC
GGAACGAGTGTCGAGAACTGTTGTGCGACGAAACGGGCGTGCAGACAACA
CTCAGTCCAACACAAACAACCATGCTCGCTCCCGCTGGCAAAAGAAACTT
CAACTGAGGTCGAAAGTGTTATACTTTTGCTCGTCCTCCCTCACCCTTGC
AAACCCCACGAGTCTTGTCCTTCACCTCTATACCGCATGTTGCGAGTGCG
AGCACGCCCACCCATGATAGATTGATTCATTCGCTATCGTTGCCAAGTAC
GATCGTGGGCCCCCCATCCATCAAACGGTTCCTAGACGCGACAACCGAAA
TACGTGAAAACAAAACGAAAAAACACGAAATCCTGAGGGCCCCATCTAGA
TTGACAAAAAGCGGGAGCTTTTCTCGAAGGTCTGACATGACTTGGCTTGG
CGTGCTCTGTCCGGTACATGGCCACCATCAACGAAACGACTCATGTCATC
AACTCCACGGTCGTAGTCCCAAGCCTCAACATTCCATCACTACCACCCCA
CCGCCTCTGCCAGAAAACTTGTGAGTAAATCAGGCGCATTTCTCACTCAT
GTGAAGCGCATCAACGCTGCCCCGCATGTCGCCGTTGGCTCAACATCACG
ACAGGCCCGAAGGCTAAGGGTAGTCGAGAGCTGAACCCAATGTTTTCTTC
CACGCTTACGACACAACAAAAACAAGAAACGAAGCGCTAAAAAACACAAA
AATGGACGGGGAGAGCCGTGCAGATTGCCGCTAGACGACGCCCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10979:1891..2986+

>mRNA_Ecto-sp13_S_contig10979.855.1 ID=mRNA_Ecto-sp13_S_contig10979.855.1|Name=mRNA_Ecto-sp13_S_contig10979.855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10979:1891..2986+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTAAATAGTTTCGACTTTGCCAACAACGTTCCCAACTCTTGCTA
CCTCCATGAATCATCATCTAGATCTAGACGCCCCCCTCCCTCTCTAGCGC
GCGGCGTGATTTTGCTTCCATGTATAGTCCTCATTCACGATTAA
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