mRNA_Ecto-sp13_S_contig10977.853.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10977.853.1
Unique NamemRNA_Ecto-sp13_S_contig10977.853.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10977.853.1 vs. uniprot
Match: D7FW02_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW02_ECTSI)

HSP 1 Score: 464 bits (1193), Expect = 4.540e-160
Identity = 269/285 (94.39%), Postives = 271/285 (95.09%), Query Frame = 1 
Query:    1 HERRSKLTKTRAEVSDKTGEFHHWATEADKHIDHKARP--ARMRELKDEHSRAREEFRDRLKRQRAVDKMQLAKLEREKQQEMEQELAAXXXXXXXXTIELEAQLRQKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETVMSGLKLTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEARLGRPSLVRETSRRSAGEILKHPLQGAKRLFKSVKPGDALEGDASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG 849
            HERRSKLTKTRAEVSDKTGEFHHWATEADKHIDHK R   ARMRELKDEHSRAREEFRDRLKRQRAVDKMQLAKLEREKQQEMEQELA XXXXXXXX         QKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETV+SGLKLTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEARLGRPSLVRETSRRSAGEILKHPLQGA+RLFKSVKPGDALEGDASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG
Sbjct:   86 HERRSKLTKTRAEVSDKTGEFHHWATEADKHIDHKVREEAARMRELKDEHSRAREEFRDRLKRQRAVDKMQLAKLEREKQQEMEQELAXXXXXXXXXXXXXXXXXXQKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETVLSGLKLTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEARLGRPSLVRETSRRSAGEILKHPLQGARRLFKSVKPGDALEGDASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG 370
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10977.853.1 vs. uniprot
Match: A0A836C9L2_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L2_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.790e-66
Identity = 134/245 (54.69%), Postives = 175/245 (71.43%), Query Frame = 1 
Query:  121 MRELKDEHSRAREEFRDRLKRQRAVDKMQLAKLEREKQQEMEQELAAXXXXXXXXTIELEAQLRQKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETVMSGLKLTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEARLGRPSLVRETSRRSAGEILKHPLQGAKRLFKSVKPGDALEGD--ASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG 849
             R+L+ EH + RE+++D+L+R+   D     + +R ++  M +E AA        T+E  A+LRQ+T+  RVK ETEG ILAERKNHD+R+EQ RQ   ++R+T++  ++L G TLG G +EFL NRQEMTA V+ LSAAALGIY+AK GTGV GR+VEARLGRPSLVRETSRRSA +  +HP +  + +    + GDAL GD     P+AIF   +E RLRRVAESS+NTR NRAPFRHLLL+G
Sbjct:   72 FRKLQGEHEQTREQYKDQLRRKLDADARTYEEQDRCREARMAEEAAAREDQIRRQTLEYAARLRQQTDQLRVKAETEGGILAERKNHDIRMEQLRQDRRESRQTLLESIRLAGATLGGGASEFLANRQEMTAAVVTLSAAALGIYAAKTGTGVAGRFVEARLGRPSLVRETSRRSALDAARHPWRTLRHVALRGRAGDALAGDIKGGRPRAIFDKALEARLRRVAESSANTRRNRAPFRHLLLYG 316
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10977.853.1 vs. uniprot
Match: A0A835YR91_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR91_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.230e-64
Identity = 128/241 (53.11%), Postives = 172/241 (71.37%), Query Frame = 1 
Query:  127 ELKDEHSRAREEFRDRLKRQRAVDKMQLAKLEREKQQEMEQELAAXXXXXXXXTIELEAQLRQKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETVMSGLKLTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEARLGRPSLVRETSRRSAGEILKHPLQGAKRLFKSVKPGDALEGDASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG 849
            E + EH + R E+ D+L+R+R VDK+   +  RE++ + ++ L          T+E EA+LRQKTEL RVK ETEGRI  ER+NHDLRLE+ R  AA+ R+TV+ G+KL GETLG GI  FLG++++M A    L+A ALGIY+AK GTGV GRY+EARLG+PSLVRETS+RS  E++K+P+   KR F  +KP +ALEG       +  P++E RL RVA+S+ NT+ N+APFRHLLL+G
Sbjct:  113 EAQTEHEKRRAEYADQLERKRYVDKINAQRQLREEELKRQEGLVQRQEDLKRKTLEYEAELRQKTELARVKAETEGRIKQERENHDLRLEEARVSAAEYRDTVLEGIKLAGETLGTGIKTFLGDKEKMLAATTTLTAVALGIYTAKTGTGVAGRYLEARLGKPSLVRETSKRSVSEVIKNPIPSFKRAFGFLKPSNALEG------VVLEPKLETRLSRVAQSTFNTKKNKAPFRHLLLYG 347
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10977.853.1 vs. uniprot
Match: A0A7S2Y1D4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1D4_9STRA)

HSP 1 Score: 196 bits (497), Expect = 5.510e-57
Identity = 127/249 (51.00%), Postives = 168/249 (67.47%), Query Frame = 1 
Query:  118 RMRELKDEHSRAREEFRDRLKRQRAVDKMQLAKLEREKQQEMEQELAAXXXXXXXXTIELEAQLRQKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETVMSGLKLTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEARLGRPSLVRETSRRSAGEILKHPLQG----AKRLFKSVK-PGDALEGDASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG 849
            R  E + EH + R ++RD+L+R+R VD+M   K  RE++   ++    XXX     T+E EA+LRQKTEL RV+ ET GRI  ER+NHDLR+EQ R +A + R TV+  +KL GET+G GI  FL + ++M A V  LSA ALGIY+AK+ TGV+GR++EARLG+PSLVRETSR S    L+ PL      A+RL +  K P DAL G       +  P++E+RLR VA S+ NT+ N+APFRHLLLHG
Sbjct:  112 RTLEAQTEHDKRRAQYRDQLERKRHVDEMNAQKYMREEEVRRQEXXXXXXXAIKRKTLEYEAELRQKTELARVEAETRGRIRQERENHDLRVEQARVEAEEYRNTVLESIKLAGETVGGGIKLFLSDNEKMVAAVGTLSAMALGIYTAKVSTGVLGRFIEARLGKPSLVRETSRTSVLAALRRPLHSTATLAQRLLRGRKQPHDALTG------VVLDPRLEERLRMVATSTFNTKKNQAPFRHLLLHG 354
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10977.853.1 vs. uniprot
Match: A0A6H5LJ37_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LJ37_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 2.060e-56
Identity = 118/240 (49.17%), Postives = 164/240 (68.33%), Query Frame = 1 
Query:  130 LKDEHSRAREEFRDRLKRQRAVDKMQLAKLEREKQQEMEQELAAXXXXXXXXTIELEAQLRQKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETVMSGLKLTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEARLGRPSLVRETSRRSAGEILKHPLQGAKRLFKSVKPGDALEGDASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG 849
            L+ E  + R +F D L+R+R VD++Q  +  R+++   ++EL          T+E EA+LRQ+TEL RVK ETEG+I  ER+NHDLRLE+ R+ A + R+TV+ G+KL G+TLG G+ EFLG++ +M A    L+A ALGIY+A+ GTGV GRY+EARLG+PSLVRETSRR+  + +++P+   KR F   K  DAL G       +    +E RL RVA+S+ NT+ N APFRHLLL+G
Sbjct:  128 LQTEEDKKRAQFADELERKRHVDQVQADRYMRDEEMRKQEELTRKQEAVRRKTLEYEAELRQQTELARVKAETEGKIRQERENHDLRLEEAREGAKEYRDTVLEGIKLAGDTLGAGLQEFLGDKDKMVAATATLTAMALGIYTARTGTGVAGRYIEARLGKPSLVRETSRRTLIQTVRNPIPTIKRAFGMHKVEDALSG------VVLEKSLETRLSRVAQSTFNTKRNSAPFRHLLLYG 361
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10977.853.1 vs. uniprot
Match: A0A7S2D4S5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D4S5_9STRA)

HSP 1 Score: 196 bits (497), Expect = 2.080e-55
Identity = 119/239 (49.79%), Postives = 162/239 (67.78%), Query Frame = 1 
Query:  133 KDEHSRAREEFRDRLKRQRAVDKMQLAKLEREKQQEMEQELAAXXXXXXXXTIELEAQLRQKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETVMSGLKLTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEARLGRPSLVRETSRRSAGEILKHPLQGAKRLFKSVKPGDALEGDASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG 849
            K EH +   ++ DRL+R+R V ++   K  +E++ + + ELA          IE EA+LRQ+TEL+RV+ ET+GRI  ER NHDLRLEQ + +A++ R+TV+ G+KL G TLG+G   FL ++++M A V  LSA ALG+YSAK+GTGV GRYVEARLG+PSLVRETSR S    L+ P+   KR+  S    +AL G       +  P++  RL RVA S+SNT+ N+APFRHLLL+G
Sbjct:   47 KTEHHKEVAKYNDRLERERFVGQLNAKKQLQEQEIKRQDELAERQAALKRKNIEHEAKLRQETELKRVEEETKGRIRQERDNHDLRLEQAKLEASEQRQTVLEGIKLAGSTLGEGARAFLSDKEKMAAAVATLSAIALGVYSAKVGTGVAGRYVEARLGKPSLVRETSRSSVLADLRSPVATMKRIMASTDASEALSG------VVLEPKLADRLSRVATSTSNTKRNKAPFRHLLLYG 279
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10977.853.1 vs. uniprot
Match: A0A067CUB5_SAPPC (AAA domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CUB5_SAPPC)

HSP 1 Score: 193 bits (490), Expect = 6.580e-54
Identity = 107/212 (50.47%), Postives = 148/212 (69.81%), Query Frame = 1 
Query:  214 KLEREKQQEMEQELAAXXXXXXXXTIELEAQLRQKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETVMSGLKLTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEARLGRPSLVRETSRRSAGEILKHPLQGAKRLFKSVKPGDALEGDASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG 849
            KL +E++ + ++E+ A        T+E EA+LR KTE+ +V  E EGRI  ER NHDL LE+ R +A + RETVM G+KL  +T+G G+  FLG+ ++++A V+ LS  ALG+Y+AK+ T V GRY+EARLG+PSLVRETSRRSA ++  +P+   KRL +   P DALEG       +  P++++RLR VA S+ NT+ NRAPFRHLLLHG
Sbjct:  135 KLFKEQEMKKQEEMLARQEASRRKTLEYEAELRTKTEMAKVAAEVEGRIKQERLNHDLHLEEARVRAKEYRETVMEGIKLASDTVGSGVMAFLGDSEKLSATVMSLSLLALGVYTAKVSTSVTGRYIEARLGKPSLVRETSRRSALQVATNPIPSVKRLLRMGAPSDALEG------VVLEPKLDERLRSVAVSTFNTKKNRAPFRHLLLHG 340
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10977.853.1 vs. uniprot
Match: M4BV23_HYAAE (AAA domain-containing protein n=27 Tax=Peronosporaceae TaxID=4777 RepID=M4BV23_HYAAE)

HSP 1 Score: 192 bits (489), Expect = 1.130e-53
Identity = 107/209 (51.20%), Postives = 149/209 (71.29%), Query Frame = 1 
Query:  229 KQQEM--EQELAAXXXXXXXXTIELEAQLRQKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETVMSGLKLTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEARLGRPSLVRETSRRSAGEILKHPLQGAKRLFKSVKPGDALEGDASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG 849
            K+QE+  ++E+ A        T++ EA+LRQ+TE+ +V  ETEGRI  ER NHDL LE+ R +A + RETVM G+KL G T+G G+  F+ +++++TA V+ L+A A GIY+AK+ T V G+YVEAR+G+PSLVRETSRRSA ++L +P+   KR  +  KP DALEG       +  P++++RLR VA S+ NT+ NRAPFRHLLLHG
Sbjct:  148 KEQELKKQEEILARQEASRRKTLDYEAELRQRTEMAKVAAETEGRIKQERLNHDLHLEEARVRAKEYRETVMEGIKLAGNTVGSGVMSFVDDKEKLTATVVSLTALAAGIYTAKVSTRVAGKYVEARMGKPSLVRETSRRSAAQVLANPIPSIKRALRLQKPTDALEG------VVLEPKLDERLRSVAVSTFNTKKNRAPFRHLLLHG 350
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10977.853.1 vs. uniprot
Match: W4HDL2_9STRA (AAA domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HDL2_9STRA)

HSP 1 Score: 188 bits (477), Expect = 2.840e-53
Identity = 106/212 (50.00%), Postives = 147/212 (69.34%), Query Frame = 1 
Query:  214 KLEREKQQEMEQELAAXXXXXXXXTIELEAQLRQKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETVMSGLKLTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEARLGRPSLVRETSRRSAGEILKHPLQGAKRLFKSVKPGDALEGDASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG 849
            KL +E++ + ++E+ A        T+E EA+LR KTE+ +V  E EGRI  ER NHDL LE+ R +A + RETVM G+KL   T+G G+  FLG+ ++++A VL LS  ALG+Y+AK+ TGV GR++EARLG+PSLVRETSRRS  ++L +P+   KR+ +   P DAL G       +  P++++RLR VA S+ NT+ NRAPFRHLLLHG
Sbjct:  133 KLFKEQELKKQEEMLARQEASRRKTMEYEAELRTKTEMSKVAAEVEGRIKQERLNHDLHLEEARVRAKEYRETVMEGIKLATNTIGTGVMAFLGDSEKLSATVLSLSVLALGVYTAKVSTGVTGRFIEARLGKPSLVRETSRRSVVQVLANPIPSIKRVLRLGTPTDALAG------VVLEPKLDERLRSVALSTFNTKKNRAPFRHLLLHG 338
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10977.853.1 vs. uniprot
Match: A0A2D4BKB9_PYTIN (ATPase family AAA domain-containing protein 3A n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKB9_PYTIN)

HSP 1 Score: 191 bits (486), Expect = 2.870e-53
Identity = 107/209 (51.20%), Postives = 147/209 (70.33%), Query Frame = 1 
Query:  229 KQQEM--EQELAAXXXXXXXXTIELEAQLRQKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETVMSGLKLTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEARLGRPSLVRETSRRSAGEILKHPLQGAKRLFKSVKPGDALEGDASLPKAIFVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG 849
            K+QE+  ++E+ A        T+E EA+LRQKTE+ +V  E EGRI  ER NHDL LE+ R +A + RETVM G+KL G T+G GI  F+ +++++T  V  L+A ALGIY+AK+ T V G+Y+EARLG+PSLVRETSRRS  +++ +PL   +R+ +  KP DALEG       +  P++++RLR VA S+ NT+ NRAPFRHLLLHG
Sbjct:  143 KEQELKKQEEMIARQEASRRKTLEYEAELRQKTEMAKVAAEVEGRIKQERLNHDLHLEEARVKAKEYRETVMEGIKLAGSTVGAGIMTFVDDKEKLTTTVASLTALALGIYTAKVSTNVAGKYIEARLGKPSLVRETSRRSVAQVVSNPLPSIRRVLRLQKPHDALEG------VVLEPKLDERLRSVAVSTFNTKKNRAPFRHLLLHG 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10977.853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW02_ECTSI4.540e-16094.39AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836C9L2_9STRA1.790e-6654.69AAA domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835YR91_9STRA1.230e-6453.11AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2Y1D4_9STRA5.510e-5751.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5LJ37_9PHAE2.060e-5649.17AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2D4S5_9STRA2.080e-5549.79Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A067CUB5_SAPPC6.580e-5450.47AAA domain-containing protein n=4 Tax=Saprolegniac... [more]
M4BV23_HYAAE1.130e-5351.20AAA domain-containing protein n=27 Tax=Peronospora... [more]
W4HDL2_9STRA2.840e-5350.00AAA domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A2D4BKB9_PYTIN2.870e-5351.20ATPase family AAA domain-containing protein 3A n=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10977contigEcto-sp13_S_contig10977:47..5613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score469.9
Seed ortholog evalue8.2e-130
Seed eggNOG ortholog2880.D7FW02
Preferred nameATAD3A
Model size849
KEGG koko:K17681
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010941,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0040008,GO:0042119,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0060548,GO:0065007,GO:0070820,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0101003
Exons7
EggNOG free text desc.mitochondrion organization
EggNOG OGsCOG1223@1,KOG0742@2759
Cds size849
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10977.853.1prot_Ecto-sp13_S_contig10977.853.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10977 47..5613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462566.3489926-CDS-Ecto-sp13_S_contig10977:46..1911681462566.3489926-CDS-Ecto-sp13_S_contig10977:46..191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10977 47..191 -
1681462566.3592932-CDS-Ecto-sp13_S_contig10977:813..9201681462566.3592932-CDS-Ecto-sp13_S_contig10977:813..920Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10977 814..920 -
1681462566.372563-CDS-Ecto-sp13_S_contig10977:1967..21651681462566.372563-CDS-Ecto-sp13_S_contig10977:1967..2165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10977 1968..2165 -
1681462566.3812308-CDS-Ecto-sp13_S_contig10977:3477..36271681462566.3812308-CDS-Ecto-sp13_S_contig10977:3477..3627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10977 3478..3627 -
1681462566.39175-CDS-Ecto-sp13_S_contig10977:4106..41871681462566.39175-CDS-Ecto-sp13_S_contig10977:4106..4187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10977 4107..4187 -
1681462566.3998604-CDS-Ecto-sp13_S_contig10977:4647..47031681462566.3998604-CDS-Ecto-sp13_S_contig10977:4647..4703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10977 4648..4703 -
1681462566.408955-CDS-Ecto-sp13_S_contig10977:5501..56131681462566.408955-CDS-Ecto-sp13_S_contig10977:5501..5613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10977 5502..5613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10977.853.1

>prot_Ecto-sp13_S_contig10977.853.1 ID=prot_Ecto-sp13_S_contig10977.853.1|Name=mRNA_Ecto-sp13_S_contig10977.853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=283bp
HERRSKLTKTRAEVSDKTGEFHHWATEADKHIDHKARPARMRELKDEHSR
AREEFRDRLKRQRAVDKMQLAKLEREKQQEMEQELAAKQEQIRRETIELE
AQLRQKTELERVKMETEGRILAERKNHDLRLEQKRQQAADTRETVMSGLK
LTGETLGQGIAEFLGNRQEMTAVVLGLSAAALGIYSAKMGTGVMGRYVEA
RLGRPSLVRETSRRSAGEILKHPLQGAKRLFKSVKPGDALEGDASLPKAI
FVPQMEQRLRRVAESSSNTRANRAPFRHLLLHG
back to top

mRNA from alignment at Ecto-sp13_S_contig10977:47..5613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10977.853.1 ID=mRNA_Ecto-sp13_S_contig10977.853.1|Name=mRNA_Ecto-sp13_S_contig10977.853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10977:47..5613- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGAGCGTCGCTCCAAGCTCACCAAGACAAGGGCGGAAGTTTCGGACAA
GACCGGAGAGTTCCACCACTGGGCCACGGAGGCCGACAAGCACATTGACC
ACAAGGCGAGGCGTGCTCCAGAAATGCCTCTGCTGGGTCTGCCAGTTGTC
GATCACTACCCTACCATTTCGTAACGTCAATGATATTCCGGATTTTGCGT
ACGGTTATGGCACATGGCCCTTGGTATCCCCTCCGTTGGATGAGATTGCG
GCCGTAATAATGGTGATGAGAGTTAAGAGGTTAGCGGTGGGAGAATCGAT
GGGATGATAAAAGGGTAGTTCTTGAGGCACTCATGTACTTATTTGCAGCA
GACGAGCTGCAGCACACGGACGACCTTCGAGACGAGACATTCCTGTTGTT
GTTTTTTTGTCTTGACTTCAAATACATGCGCGCTCACAGCGTTTGTACGG
TTCACTCCATCCCGTGGTCGCACAGAAGAATTTCCCCCTACCCACCACTC
CTGCTTTATATGTTTTGCCTTCGGTTTGTAATGCGAGGAAAGTACAGCAC
TCTCTTCTGTTGGTGTACACACGAACTAGTGCTATCCACCCGGGCCAGGA
ATGGAAGCGAGATAACAGCTCACTTTACAAGATAAGCTCGCTTTGGACAG
CCATTTTGATGCATATCCCTACGGCTGGACGCACTTTGATTTTCACATCC
GCTAACCCTTTGTACGTGAGAGGAATGTCCCGAATTGACCACAAGGACCT
CTCGTTGGCAGCGAGCACGACTGTTGCCAGGTGTCGGTGCTGCTCTCGCC
CTTTGTGTGTGCCTGAGTTTTCCACCTCACCCCGCTTGGGGGGTTGCCCG
ATCCCTGTACCACGCTGTGCGTCGCATGCCCCCTGCCGTATGCGTAGGGG
CGTGAGGAAGCAGCGCGGATGCGAGAGCTGAAGGATGAGCACAGCAGGGC
CAGGGAGGAGTTCCGGGTGAGTGCAGTGGCGAGGCAAGCAAGCTGCGGAG
GGGGTACTCAAAGTCGTGCGTGCTGTATTCGTTAGACGATTGACCTCGCA
TCCCAACAAAGCCGGGCACGGCAGCGCACAGGCACCGAATGACTTTTTTC
GTTTCGTGGGAGCTTCTTGAGAGAACAGTTTCACAGAAGATCGATGCTCT
GCTGTACGTTTACCATTGGTGCCACATCTTCGTGGAGCAGTCGATGCGGC
CTTTTTGTGTCTCCTACTTGTGGGCATCGTGTATGAACGTGACAACAATA
GCTGTAAGGGTTAGCCTTCGGTGTTCAGCACGGTATGCTTGTAAATACCT
CTTCGGTCATGCCATTACGCCCGTTCTCCCCTACCGTGTGTTTTGCTGTG
ATCTACAGTCGCGGTGTTATTTGCTGACACGTAGCTTTGGACCCCCCCCC
ATTATTGGTGCGTGCACACGGTACAGGATCGTCTGAAGCGTCAGCGAGCG
GTCGACAAGATGCAGCTTGCCAAGCTAGAGCGAGAAAAGCAGCAGGAGAT
GGAACAGGTAACGAAAACAAAAGCGGCAGCCAGCAACAGCACGAACAACA
TGTGTGTGCGTGCCTGTGTGTCTGTGCACGCGTGTACGTACTTTTTTTAC
AAGCATCGAGTACGCTTACCTCCTGACAAGTGAAAGCACGCCAGTCTTGA
AGGAACACAACATCTCTCCCCTGTATGTCGTTGGGCAGTTGGTATTCCCC
TCTCAAATCTGCTGACGCACGCAAACAAGTCGGTCCGTAGCGGGACACAT
GTCCTTTGTAGGCCGCATATGAGAATGATGTTTTGGTTGTCGCGCGTTGC
ACGATAGGGGCTTAAGCGAAGGCATGTGCGTTGTTCAATCGTACGTTGTG
TGCACAACGAAGAACAACATTTTTGCGCACGGCTTTCGCACTGTCGTGGT
TACCCTGACGATTGTTGGCGGTTATGGAGACTGGGATTATTTTGTATCCA
CTTTGCCGTTCCCCTTTGCGTTTCGTCGTTCTTCAGGAGCTAGCGGCAAA
ACAGGAGCAGATTAGACGGGAGACGATCGAGCTGGAGGCGCAGCTTCGGC
AGAAGACGGAGCTGGAGCGTGTGAAGATGGAGACGGAGGGGAGGATTCTA
GCAGAGAGAAAGAACCACGACCTTCGTCTCGAGCAGGTTAGAGCCGGTAG
AGCGTTGGGCGTGGTTTGATTTGTTTCGGTGGATTGATTTTGAAGACCGA
GCGGAAGAAGCGCCTTCACGCGTGGAGATTTGATATGGTGTGTGGATTAT
CCGAAAGGGGATCCGGTAGAGCTGCAACAGGCACGACTCTGTCGGCGTAA
TACTCCTTGGTGGGTGGTGGAGGTGGTGTTTCTGTACATCATGGGACGTA
TGCTATCGTCCGATAATATTCGGGAAAGGCACTATGACGGAGAGGAACAA
GCACGAAGTCCACGCTCGGGTCTTGCGTGTAGTTTCGAGTTGGTCGGAGG
CTATGGTTTGAGTCTTTTGTGTTGTTAGTTGTTGTTTCATGAATCAAGTC
TTCTCTTCAGACGATCGCCATTCGGCTCAGTTGGCCTGTTCTATTTTGCC
GATGGCGCCACCTCATCTCGGCTCCAATTGCAGCCCATGTGGTAATCTTA
GTCGGAAAGAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTCTGC
GTAGTAGCTCGCGCTTGCTGGACCGGTTTTCCCTACAAACTCGATGCCTC
TGCCCTCTTCAGTACGAGTTGGCGACTTGTAGGTGCGGAAAAGATCGCCA
CGTGTTTCTCAACGAGACTCAAGTTCGAGGCGTTGTGTGACCATATCGTG
TTGAATGCGCACGGGTCAGGGTCATCGATGACCCTGAGGGGAACGCCGCC
GCCGCTGCCGTCATACTGCACCTTGCCCCGAGGGAGTGAATGCGATCGGT
CGCCGTTACGTGAGACCCCATCTGTGTCCTCCCCTTCCAATCGGTAACCC
TCTTACGTTTGGTTTTCCCGTTGCAGGCGTGTCTCTGTCAGAAATAGGAC
CGGGCGGTTATCCGCTCGAAAAGACACGTACGTTAATCAAAAACTAAGGC
GAAGCACCCATTGAGCCCCTGCCTCCCCCTGAACAAACACACGCCGCATG
TCCACGCATTTTTTTCCTTCCTCCCTCCCTCGAACTCCTCTCGATACGCC
CTCTTTCTCCTCGGCATGCGCGCGCCTTGTTTTCTCGGGGGTTTGCAGAA
GAGGCAGCAGGCCGCGGACACCCGGGAGACCGTCATGTCTGGCCTCAAGC
TCACCGGCGAGACGCTCGGACAGGGCATCGCGGAGTTCCTCGGCAACCGC
CAGGAGATGACGGCGGTGGTGCTCGGCCTGTCGGCGGCGGCCCTCGGCAT
CTACTCGGCCAAGATGGGCACCGGAGTCATGGGCCGCTACGTCGAGGTGT
GTCGGGGTTGCTTTTTCGTTTCCTTTTTCGTTTTTTTGGCTCAAGGTGTA
TGTTTGAGAGTTGAGTCGTGTGCGGAAAAGGCGGCGCTGGATTGCGGTGA
CCATGTGTCGTGCTGCCGGTCGAACGAAAGTAGCGAATGTGCGACTGACA
GCTATATTAACACCTTCGAGTTTCCTTGTGTATACTTTTGTCGGAATGCC
GTGCGGTCATCGCATGCCTCTGTTTGGAACGACCGCAGTTGTCTCGTATG
TTTCATTATCCTGCCGACGGCTAATTTTTTCGAAGGACAATGTTTCACCT
GTGACTCCGGATACGCGAGACCTGGAGAATCGGGCCGTTTGTTCTCGGTC
AGCCTGTCTACGAATGGGACATCATCGCCTCTTCTCGTTTCTTCTCTGCC
ATGCCACTTGCTATCATCGTAGCAGTTATTGTCGTCTCTATCTCGTTATC
GTGCGATGGGAGACTACTTCCGTGGTGCTGGTGCCGTTAACTCCGTTCCG
ATTGCTTCGCACGAAACCATAATGAATGGGATGGAAACATACACACACAT
ATGTACACACACCCTTTTAGCCTTCCCCGTATAGACTGGGCCCGAGGTCG
TTGGACGCATCGGGGACTTACGTCTTTTCAACGGTCGGTCGTTTATCGCG
GTCCGCGTAAATACTCAAGACACGCGCGCACACACGATGGAGCGCTTCTC
TCTACGCTGCCGCTCCCAACTTCTCCGGAGTGTTTTGTATTTCCTGCAGC
TTGGACGAAGGCCCCCACGTAGCGCGTTCAGCTGCCGGCCTGTCTGCGAA
ACATCGTTGACTGATGACCAGCTGGGAAACAAAGAACGAAAACCTGTTCC
AACGGAACATCCTCGTCTCGGCCTCCGCACGTCCGGCAGTGGTTTGGCGA
CGTCACAGCTCGTAGGTTCCCTCTTTTTTGGTTAGGTATGCTTTGCGTCG
TGGCCTTGCAGGACTCTTACCTTCCTTGCCTGTTGTGAATCGGTGCTGCT
GCTGCTGCTGCTGTTGTTGTTACCGTTTTCTTGTTGCGAAAAGGCAAGGC
TCGGGCGACCTTCTCTCGTCCGAGAGACTTCCCGTCGGTCTGCGGGGGAA
ATCTTGAAGCACCCACTGCAGGGGGCGAAACGGCTGTTCAAGTCTGTCAA
GTGAGCACAAACATCGTTTGTTAAGCCTGCTTTCTCGCCAACCACAGATT
TTGGCGGAACTGGTTGGCTTTTTGCTTGCTCATGGGTCTCTCTCGTTTTC
CCGCTGATGATATCATGTACAAGTACCTGGTAAGTCTGAGAAGCTTGTTT
TCTCCTGTAGACGTCTCTAGTGTTTTTCGTTTTTTTTTCCGTATCCCCAG
AGCGTGCAGAAAATTAGGGAGAGAGTCCTTCAGGATAAGGAACGGCATGC
TCTATTTAGTGCACCGAAGGCGCATACTACATGGCAGCAACAAGGTTGAT
GAGGGCTCTTTCCTTTGCAGTTCGAGTACGATAACGTTGTTGCTCCGGGC
CCCGTGTCACGAGACCCTACCCCCCGCCCCCCCTTCCCTCCGGCGAAAGT
CCGCCTCACAAAGGTTTGACGCTACGACGATGCAATTTACCCTACATGCG
GCTGTTTTGACTATTTTTGTTTTGTGGAGCGCGGATCTCATCGTCAGAAG
ACCGGCTTTCTCGGTGCCGCTTCACAGGCACGCTTGAGTGTTTGCCGAGT
GCTTTCTCGTTCACTCCGTGCCCACACTACTGCGAAACCTCACGTGCACT
CGTGCTTGCATGGGTGGTCCAGGCCGGGGGATGCGCTGGAGGGCGACGCC
TCTTTGCCGAAGGCCATCTTCGTCCCGCAGATGGAGCAGCGTCTCCGAAG
GGTGGCCGAGTCGTCGTCCAATACTCGCGCCAACCGTGCGCCTTTCCGCC
ACCTGCTCCTGCACGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10977:47..5613-

>mRNA_Ecto-sp13_S_contig10977.853.1 ID=mRNA_Ecto-sp13_S_contig10977.853.1|Name=mRNA_Ecto-sp13_S_contig10977.853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=849bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10977:47..5613- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGAGCGTCGCTCCAAGCTCACCAAGACAAGGGCGGAAGTTTCGGACAA
GACCGGAGAGTTCCACCACTGGGCCACGGAGGCCGACAAGCACATTGACC
ACAAGGCGAGGCCAGCGCGGATGCGAGAGCTGAAGGATGAGCACAGCAGG
GCCAGGGAGGAGTTCCGGGATCGTCTGAAGCGTCAGCGAGCGGTCGACAA
GATGCAGCTTGCCAAGCTAGAGCGAGAAAAGCAGCAGGAGATGGAACAGG
AGCTAGCGGCAAAACAGGAGCAGATTAGACGGGAGACGATCGAGCTGGAG
GCGCAGCTTCGGCAGAAGACGGAGCTGGAGCGTGTGAAGATGGAGACGGA
GGGGAGGATTCTAGCAGAGAGAAAGAACCACGACCTTCGTCTCGAGCAGA
AGAGGCAGCAGGCCGCGGACACCCGGGAGACCGTCATGTCTGGCCTCAAG
CTCACCGGCGAGACGCTCGGACAGGGCATCGCGGAGTTCCTCGGCAACCG
CCAGGAGATGACGGCGGTGGTGCTCGGCCTGTCGGCGGCGGCCCTCGGCA
TCTACTCGGCCAAGATGGGCACCGGAGTCATGGGCCGCTACGTCGAGGCA
AGGCTCGGGCGACCTTCTCTCGTCCGAGAGACTTCCCGTCGGTCTGCGGG
GGAAATCTTGAAGCACCCACTGCAGGGGGCGAAACGGCTGTTCAAGTCTG
TCAAGCCGGGGGATGCGCTGGAGGGCGACGCCTCTTTGCCGAAGGCCATC
TTCGTCCCGCAGATGGAGCAGCGTCTCCGAAGGGTGGCCGAGTCGTCGTC
CAATACTCGCGCCAACCGTGCGCCTTTCCGCCACCTGCTCCTGCACGGT
back to top