mRNA_Ecto-sp13_S_contig10936.837.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10936.837.1
Unique NamemRNA_Ecto-sp13_S_contig10936.837.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10936.837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10936contigEcto-sp13_S_contig10936:4356..5450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size201
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-22_003840.1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462564.661501-CDS-Ecto-sp13_S_contig10936:4355..44041681462564.661501-CDS-Ecto-sp13_S_contig10936:4355..4404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10936 4356..4404 -
1681462564.675106-CDS-Ecto-sp13_S_contig10936:5206..52661681462564.675106-CDS-Ecto-sp13_S_contig10936:5206..5266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10936 5207..5266 -
1681462564.6882863-CDS-Ecto-sp13_S_contig10936:5358..54501681462564.6882863-CDS-Ecto-sp13_S_contig10936:5358..5450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10936 5359..5450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10936.837.1prot_Ecto-sp13_S_contig10936.837.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10936 4356..5450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10936.837.1

>prot_Ecto-sp13_S_contig10936.837.1 ID=prot_Ecto-sp13_S_contig10936.837.1|Name=mRNA_Ecto-sp13_S_contig10936.837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
MMRGVSSDVKYRPWGPPYTAVAMQVRQRRSSGRSPSRNGTPAASGRFKFK
PSLDSRCPAQGGLMCT*
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mRNA from alignment at Ecto-sp13_S_contig10936:4356..5450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10936.837.1 ID=mRNA_Ecto-sp13_S_contig10936.837.1|Name=mRNA_Ecto-sp13_S_contig10936.837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10936:4356..5450- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAGGGGGGTTTCCTCTGACGTCAAATATAGGCCCTGGGGCCCCCC
CTACACCGCAGTGGCCATGCAGGTGCGGCAGAGACGCAGCAGGTGAAGAG
GGATTGCCCGATAGAGAGGACAGCAAAGGGAAAAAAAAGTATTCCGTAAG
CAGGTGAGGGTCGGGAGGTGGCCGTTCTTTGAAGTGGGCGTTCTCCCTCT
CGGAATGGTACCCCTGCCGCCAGCGGGCGATTCAAATTTAAACCGTCAGT
TCAAACACGTATAAGCGCTGGCGTGTACATGCAACACCCTGCGGTAGCAG
GCGGTAGCAGTACATCTCCCTGACTTGATGTTTAACAAGGCGGTGTCCGT
GCGACCGTAGGCGATGATCTCGTGAGAATATGGCGTTGCTCGCCAAGAAT
ACCAAGACCATGTGTCGAAAACAAATGCCTACGTTGGAGGTAACTTGCGC
AGAGAATGCGAATTCGCCGCAAGAATCCTGCACACGGTTGCTTCGCAGGT
GTGGTTACCTGAGAATCGGCAGCAGAAACACATCTCAGGCAGCGATATTG
CACCCCGTCCTACTGTAGGCAAGACCGCGCTACAGTAGTGCAGTGTTCTA
TGGTAAAGGAAACATTTTTGTAGAGTTGATGGTACGCAATTTCAGGGGTA
TCTTGTCAGAGTCAGAGGTGCCTGTAATGGAGCCAGCACGTTTGCTATAC
CCTGGCCAAGACTGCCGACGGATGATTAACAGACATCGAGACAGAGATAC
GGGACAAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
ACCGCGGGAGAGAGACACACACACAGAGAGAAAGCAAACAACGAACTCGT
CTTTCCACGAACATTAACTTTGTGCCATATCCCACTGGGATGGGGCCTCT
GTTTTTCCCAAACGACCAGCCAACCTAGCATTGCCATCGGTGTAGGCGAG
TAGCATGGAAAACTATCCTACTCTTCGGCCACACAAAACAGAACCCGCTG
TACCCTGTCCGACATTCTTGCATCGAAAACTCACCCGCAAATGCAGCTCG
CTCGATTCCCGCTGTCCGGCGCAGGGCGGTCTCATGTGCACTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10936:4356..5450-

>mRNA_Ecto-sp13_S_contig10936.837.1 ID=mRNA_Ecto-sp13_S_contig10936.837.1|Name=mRNA_Ecto-sp13_S_contig10936.837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10936:4356..5450- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAGGGGGGTTTCCTCTGACGTCAAATATAGGCCCTGGGGCCCCCC
CTACACCGCAGTGGCCATGCAGGTGCGGCAGAGACGCAGCAGTGGGCGTT
CTCCCTCTCGGAATGGTACCCCTGCCGCCAGCGGGCGATTCAAATTTAAA
CCCTCGCTCGATTCCCGCTGTCCGGCGCAGGGCGGTCTCATGTGCACTTG
A
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