mRNA_Ecto-sp13_S_contig10925.825.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10925.825.1
Unique NamemRNA_Ecto-sp13_S_contig10925.825.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10925.825.1 vs. uniprot
Match: D8LHG8_ECTSI (BEACH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG8_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 3.840e-30
Identity = 79/105 (75.24%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:   25 EARTKVEEDRRAFAFAHDVGLRLEPWYGRPRTRSGGGPSVADSAXXXXXXXXXXXXXXXXXXXXXXXXXA-------AHGSDGVRSSEAADLLALGCVLAEMCAG 318
            EAR KVEEDRRAFAFAHDVGLRLEPWYGRPRTRSGGGPSVADSA XXXXX               XXXX        A GSDGVRSSEAADLLALGCVLAEMCAG
Sbjct:  767 EARAKVEEDRRAFAFAHDVGLRLEPWYGRPRTRSGGGPSVADSAAXXXXXTAGVTAPAGEDIATPXXXXXXXXXGGYASGSDGVRSSEAADLLALGCVLAEMCAG 871
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BLAST of mRNA_Ecto-sp13_S_contig10925.825.1 vs. uniprot
Match: A0A6H5KNG5_9PHAE (BEACH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG5_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 6.300e-29
Identity = 69/105 (65.71%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:   25 EARTKVEEDRRAFAFAHDVGLRLEPWYGRPRTRSGGGPSVADSAXXXXXXXXXXXXXXXXXXXXXXXXXAA-------HGSDGVRSSEAADLLALGCVLAEMCAG 318
            EAR KVEEDRRAFAFA DVGLRLEPWYGRPRTRSG GPSVADSA                         AA        GSDGVRSSEAADLLALGCVLAEMCAG
Sbjct:  757 EARAKVEEDRRAFAFARDVGLRLEPWYGRPRTRSGSGPSVADSAAAASGGTAGVTAPAGEDIATPTMTAAAARRGGYGSGSDGVRSSEAADLLALGCVLAEMCAG 861
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10925.825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHG8_ECTSI3.840e-3075.24BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KNG5_9PHAE6.300e-2965.71BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10925contigEcto-sp13_S_contig10925:172..876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score122.5
Seed ortholog evalue1.2e-25
Seed eggNOG ortholog2880.D8LHG8
Model size319
KEGG koko:K17601
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.aggrephagy
EggNOG OGsKOG1786@1,KOG1786@2759
Cds size318
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462563.8078177-CDS-Ecto-sp13_S_contig10925:172..4341681462563.8078177-CDS-Ecto-sp13_S_contig10925:172..434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10925 173..434 -
1681462563.8198166-CDS-Ecto-sp13_S_contig10925:820..8761681462563.8198166-CDS-Ecto-sp13_S_contig10925:820..876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10925 821..876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10925.825.1prot_Ecto-sp13_S_contig10925.825.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10925 173..876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10925.825.1

>prot_Ecto-sp13_S_contig10925.825.1 ID=prot_Ecto-sp13_S_contig10925.825.1|Name=mRNA_Ecto-sp13_S_contig10925.825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
AESAGAAGEARTKVEEDRRAFAFAHDVGLRLEPWYGRPRTRSGGGPSVAD
SAAAASGGTAGVAAPADEDITTPTTTAAAHGSDGVRSSEAADLLALGCVL
AEMCAG
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mRNA from alignment at Ecto-sp13_S_contig10925:172..876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10925.825.1 ID=mRNA_Ecto-sp13_S_contig10925.825.1|Name=mRNA_Ecto-sp13_S_contig10925.825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10925:172..876- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGAGAGCGCCGGCGCCGCCGGCGAAGCGCGCACGAAGGTCGAGGAGGA
CAGAAGGTGGGGATAGTTGTTGACGGAAGCTAGCTTTCGATCCCAGACAG
CGCCAAGAGAGCGCGTGCCGTACCTTACTAGCGGCACCTGTTGATGCGCA
CACGCCTTGACGACTGAATCATGGTATGCATTTAGTGCCCGATATTAAGA
AACCAACCTTTGAGAAACAAAGGCTCATTTTGTGGCGAACGTTAAGAAAA
GTCGGCTAAGAAACACACCTCAGCCGTGGATCCTACACTTAACTCTATGT
TTTGTTTTGACCTATGCTCGACGGTGGTGACGAAATAAGAAATTGAGCCT
CGACCCCAAGTTGACGTTTTTCAAACGCGGGCACTAACTGTGCACGAACG
ACTTGAACACCGCCCCCCCCCTCCCTGCTTTCTCCCCCCCAGGGCTTTCG
CCTTTGCGCACGACGTGGGGCTCCGCTTAGAGCCGTGGTACGGCAGGCCT
CGCACGCGCTCCGGCGGCGGCCCAAGCGTTGCCGATTCCGCCGCCGCTGC
CTCCGGCGGGACCGCAGGCGTTGCCGCTCCCGCCGATGAAGACATAACCA
CGCCGACAACGACTGCCGCCGCGCACGGCAGCGACGGCGTTCGGTCATCG
GAGGCGGCGGACCTGCTCGCGTTAGGTTGTGTCCTGGCGGAGATGTGCGC
GGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10925:172..876-

>mRNA_Ecto-sp13_S_contig10925.825.1 ID=mRNA_Ecto-sp13_S_contig10925.825.1|Name=mRNA_Ecto-sp13_S_contig10925.825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10925:172..876- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGAGAGCGCCGGCGCCGCCGGCGAAGCGCGCACGAAGGTCGAGGAGGA
CAGAAGGGCTTTCGCCTTTGCGCACGACGTGGGGCTCCGCTTAGAGCCGT
GGTACGGCAGGCCTCGCACGCGCTCCGGCGGCGGCCCAAGCGTTGCCGAT
TCCGCCGCCGCTGCCTCCGGCGGGACCGCAGGCGTTGCCGCTCCCGCCGA
TGAAGACATAACCACGCCGACAACGACTGCCGCCGCGCACGGCAGCGACG
GCGTTCGGTCATCGGAGGCGGCGGACCTGCTCGCGTTAGGTTGTGTCCTG
GCGGAGATGTGCGCGGGG
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