mRNA_Ecto-sp13_S_contig10923.824.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10923.824.1
Unique NamemRNA_Ecto-sp13_S_contig10923.824.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10923.824.1 vs. uniprot
Match: A0A6H5L2E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E9_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 2.560e-52
Identity = 89/125 (71.20%), Postives = 100/125 (80.00%), Query Frame = 2 
Query:  131 AAVAVRTASCSHDEPPGAIATGLTRHQLAQAAKEYPGLCGVYNAAAIAGVSYGEVAATAERRGVAVTFSVFRNQCCFDAAKNLGAAGIGVQLARKECFTQACRAVFPGNGTPEPWVETAFSSEIA 505
            AA+AV   SC HD+PP A+  GLTR Q   AAKE+PGLCG Y    +AGVSY +V ATAERRGV+VTF+VFRNQCCFDAAK L A G+GVQLARKECFTQA RAVFPGNGTP+ WVET FS+E A
Sbjct:   45 AALAVGAGSCVHDDPPKALPRGLTRDQGVAAAKEHPGLCGFY----LAGVSYDDVVATAERRGVSVTFNVFRNQCCFDAAKKLRADGMGVQLARKECFTQAFRAVFPGNGTPDQWVETTFSAENA 165
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BLAST of mRNA_Ecto-sp13_S_contig10923.824.1 vs. uniprot
Match: A0A6H5KV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV53_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.280e-43
Identity = 77/117 (65.81%), Postives = 89/117 (76.07%), Query Frame = 2 
Query:  131 AAVAVRTASCSHDEPPGAIATGLTRHQLAQAAKEYPGLCGVYNAAAIAGVSYGEVAATAERRGVAVTFSVFRNQCCFDAAKNLGAAGIGVQLARKECFTQACRAVFPGNGTPEPWVE 481
            A VA    SC HD+P  A+  GLTR Q  +AAKE+PGLCGVY    +AGVS+ +V A AERRGV+VTF+V  NQCCFDAAK L   G+GVQLARKECFTQA RAVFPGNGTP+ WV+
Sbjct:   19 AVVAAGAGSCLHDDPLKALPGGLTRDQGVEAAKEHPGLCGVY----LAGVSFDDVLAAAERRGVSVTFNVLLNQCCFDAAKKLRVGGMGVQLARKECFTQAFRAVFPGNGTPDQWVD 131
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BLAST of mRNA_Ecto-sp13_S_contig10923.824.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 9.900e-17
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 2 
Query:  131 AAVAVRTASCSHDEPPGAIATGLTRHQLAQAAKEYPGLCGVYNAAAIAGVSYGEVAATAERR-GVAVTFSVFRNQCCFDAAKNLGAAGIGVQLARKECFTQACRAVFP 451
            AAVAV    C+HD PPG +       +   A +++ GLCG Y+A  IA +   +V    ER  G  +T    RNQ C+DA   L A G GVQL R+ECFTQACRAV+P
Sbjct:   79 AAVAVGARYCNHDTPPGPLPDIGKLPERQAAVQQHAGLCGKYHAEHIANI---DVTMVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWP 183
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BLAST of mRNA_Ecto-sp13_S_contig10923.824.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.570e-16
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 2 
Query:  131 AAVAVRTASCSHDEPPGAIATGLTRHQLAQAAKEYPGLCGVYNAAAIAGVSYGEVAATAERR-GVAVTFSVFRNQCCFDAAKNLGAAGIGVQLARKECFTQACRAVFP 451
            AAVAV    C+HD PPG +       ++  AA+++ G CG Y+   IA +   +V    ER  G  +T    RNQ C+DA   L A G GVQL R+ECFTQACRAV+P
Sbjct:  183 AAVAVGARYCNHDTPPGPLPDISKLPEMQAAAQQHAGSCGKYHGEHIANI---DVTMVKERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWP 287
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BLAST of mRNA_Ecto-sp13_S_contig10923.824.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.850e-13
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 2 
Query:  158 CSHDEPPGAIATGLTRHQLAQAAKEYPGLCGVYNAAAIAGVSYGEVAATAERRGVAVTFSVFRNQCCFDAAKNLGAAGIGVQLARKECFTQACRAVFPGN 457
            C HD  P  + + +      +AA E+PGLCGV++A  IA V   +V +   R G     + FRNQ C+D    +   G GVQL R +CFT ACRAV+PGN
Sbjct:   57 CHHDTAPEPMPS-MALAAAKKAAAEHPGLCGVHHAHIIAAVRTEDVTS---RSGFTAA-NKFRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGN 151
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BLAST of mRNA_Ecto-sp13_S_contig10923.824.1 vs. uniprot
Match: A0A6H5K7P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.280e-9
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:   33 VEDFKGGDSHAILVQVKEAYEHDVARVREFAF 128
            VE+FKGGDS+AILVQVKEAYEHD ARVREF F
Sbjct:   12 VEEFKGGDSYAILVQVKEAYEHDAARVREFVF 43
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BLAST of mRNA_Ecto-sp13_S_contig10923.824.1 vs. uniprot
Match: A0A6H5KAB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.200e-9
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:   33 VEDFKGGDSHAILVQVKEAYEHDVARVREFAF 128
            VE+FKGGDSHAILVQVK AYEHDVARV++F F
Sbjct:   12 VEEFKGGDSHAILVQVKAAYEHDVARVQDFVF 43
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10923.824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L2E9_9PHAE2.560e-5271.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV53_9PHAE1.280e-4365.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJS7_9PHAE9.900e-1746.30Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3W2_9PHAE4.570e-1645.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE6.850e-1343.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P2_9PHAE1.280e-987.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAB9_9PHAE4.200e-984.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10923contigEcto-sp13_S_contig10923:3774..4942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size505
Hectar predicted targeting categoryother localisation
Exons2
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462563.7025104-UTR-Ecto-sp13_S_contig10923:3773..37801681462563.7025104-UTR-Ecto-sp13_S_contig10923:3773..3780Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10923 3774..3780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462563.713843-CDS-Ecto-sp13_S_contig10923:3780..39261681462563.713843-CDS-Ecto-sp13_S_contig10923:3780..3926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10923 3781..3926 -
1681462563.724391-CDS-Ecto-sp13_S_contig10923:4590..49421681462563.724391-CDS-Ecto-sp13_S_contig10923:4590..4942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10923 4591..4942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10923.824.1prot_Ecto-sp13_S_contig10923.824.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10923 3781..4942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10923.824.1

>prot_Ecto-sp13_S_contig10923.824.1 ID=prot_Ecto-sp13_S_contig10923.824.1|Name=mRNA_Ecto-sp13_S_contig10923.824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
MAANAYSGTPPWRISRVETAMPSLSRSRRRTSMMSHAFENLPSCCRCGPN
GVMQSRRAARSHSNRIDAPSARPSRQGVPRTLWSLQCGGDCWRQLWGGGR
YCREAWCCRHVQCLPQSVLLRRSKESWCGWDRRPTRSQGMLYTSMQGCFS
REWHAGAMGGNSIQL*
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mRNA from alignment at Ecto-sp13_S_contig10923:3774..4942-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10923.824.1 ID=mRNA_Ecto-sp13_S_contig10923.824.1|Name=mRNA_Ecto-sp13_S_contig10923.824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1169bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10923:3774..4942- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCCAACGCATACTCCGGCACTCCCCCGTGGAGGATTTCAAGGGT
GGAGACAGCCATGCCATCCTTGTCCAGGTCAAGGAGGCGTACGAGCATGA
TGTCGCACGCGTTCGAGAATTTGCCTTCATGCTGCCGTTGCGGTCCGAAC
GGCGTCATGCAGTCACGACGAGCCGCCAGGAGCCATAGCAACAGGATTGA
CGCGCCATCAGCTCGCCCAAGCCGCCAAGGAGTACCCCGGACTCTGTGGA
GTCTACAATGCGGCGGCGATTGCTGGCGTCAGCTATGGGGAGGTGGCCGC
TACTGCAGAGAGGCGTGGTGTTGCCGTCACGTTCAGTGTCTTCCGCAATC
AGGTATGCATAGTAGCAAACGCGGATACGGGCATCACCGCTGATGTATAA
TAATGCGTACAGCAGTGGTTTGGTGATGAGTGGGTTGCGTTTCGAGGCAA
GCAGAGGTACGTGCATGTTGTGTGTACGTAATGTCACGAAAGCATGGGGC
ACGATACTGCTGTAATTCTCCTAGTCCATACTGGTAGGGGTCAGGTTTGG
GTTGTAAAATGTAGACGGCCCTCGGTGCCCGTGGACGTGCCCAATTGTGG
ATGCGTTTACTATTGAGCGAAGCCCTACAGCAGTGACATTACGTACACAC
AACATGCACGTACCTCTGCTTGCCTCGAAGTGCAACCCACTCATCACTAC
CCCACTGCTGTACGCATGATTATACTTTCGTATAATCCAACAATCAGTCG
CCGCGAACTGAGTGAGGGTTCGGGAGCAGAATGCAAGCACGCATCCTTGC
ATAGGCCACACGTATTTCACGCATCATGAATGAATCATGCTATGCCCAAG
GTGAACCTTTGATTGCCGTGAAAAAGCGGCTGCTATGTATTTTCTTGGAG
GCGCCATTCTATCCTATTTCTTGTGACAATACGACGTTACCATGTTTACG
GCAGGCGGGATGGTGCGCACCAGCTTCTCTCGCATCCCCCCTCCTGGTAA
CCACTCACGCCCCCAGTGTTGCTTCGACGCAGCAAAGAATCTTGGTGCGG
CTGGGATCGGCGTCCAACTCGCTCGCAAGGAATGCTTTACACAAGCATGC
AGGGCTGTTTTTCCCGGGAATGGCACGCCGGAGCCATGGGTGGAAACAGC
ATTCAGCTCTGAAATTGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10923:3774..4942-

>mRNA_Ecto-sp13_S_contig10923.824.1 ID=mRNA_Ecto-sp13_S_contig10923.824.1|Name=mRNA_Ecto-sp13_S_contig10923.824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10923:3774..4942- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCCAACGCATACTCCGGCACTCCCCCGTGGAGGATTTCAAGGGT
GGAGACAGCCATGCCATCCTTGTCCAGGTCAAGGAGGCGTACGAGCATGA
TGTCGCACGCGTTCGAGAATTTGCCTTCATGCTGCCGTTGCGGTCCGAAC
GGCGTCATGCAGTCACGACGAGCCGCCAGGAGCCATAGCAACAGGATTGA
CGCGCCATCAGCTCGCCCAAGCCGCCAAGGAGTACCCCGGACTCTGTGGA
GTCTACAATGCGGCGGCGATTGCTGGCGTCAGCTATGGGGAGGTGGCCGC
TACTGCAGAGAGGCGTGGTGTTGCCGTCACGTTCAGTGTCTTCCGCAATC
AGTGTTGCTTCGACGCAGCAAAGAATCTTGGTGCGGCTGGGATCGGCGTC
CAACTCGCTCGCAAGGAATGCTTTACACAAGCATGCAGGGCTGTTTTTCC
CGGGAATGGCACGCCGGAGCCATGGGTGGAAACAGCATTCAGCTCTGA
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