mRNA_Ecto-sp13_S_contig10923.823.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10923.823.1
Unique NamemRNA_Ecto-sp13_S_contig10923.823.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10923.823.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.880e-7
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 MVFAKFASLVFVQWKDSKLVKILSKIHLNPKHFLTKE 111
            MV A+F  LVFVQWKDSK+VK LS +HL+PKH L KE
Sbjct:  657 MVLARFGFLVFVQWKDSKVVKFLSTVHLSPKHVLPKE 693
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BLAST of mRNA_Ecto-sp13_S_contig10923.823.1 vs. uniprot
Match: A0A3B4TFC7_SERDU (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Seriola TaxID=8160 RepID=A0A3B4TFC7_SERDU)

HSP 1 Score: 50.1 bits (118), Expect = 3.810e-5
Identity = 30/74 (40.54%), Postives = 38/74 (51.35%), Query Frame = 1 
Query:   25 LVFVQWKDSKLVKILSKIHLNPKHFLTKEYSKHVAGQSKKDDGFQPWCRFHYNKFMWGVDISDQHNGAYRTQHR 246
            L+FV+W DSK V I S IH      + K + K   GQ K  +   P     YNK+M GVD+SDQ    Y   H+
Sbjct:  435 LLFVKWMDSKQVSICSTIHTVYSGEIAKRHVKGKDGQWKIQNIPMPTPVAEYNKYMGGVDLSDQLIQYYSVHHK 508
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10923.823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIB8_9PHAE4.880e-770.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3B4TFC7_SERDU3.810e-540.54DDE_Tnp_1_7 domain-containing protein n=3 Tax=Seri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10923contigEcto-sp13_S_contig10923:1279..1707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size248
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462563.7555633-CDS-Ecto-sp13_S_contig10923:1278..13941681462563.7555633-CDS-Ecto-sp13_S_contig10923:1278..1394Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10923 1279..1394 +
1681462563.76655-CDS-Ecto-sp13_S_contig10923:1577..17071681462563.76655-CDS-Ecto-sp13_S_contig10923:1577..1707Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10923 1578..1707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10923.823.1prot_Ecto-sp13_S_contig10923.823.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10923 1279..1707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10923.823.1

>prot_Ecto-sp13_S_contig10923.823.1 ID=prot_Ecto-sp13_S_contig10923.823.1|Name=mRNA_Ecto-sp13_S_contig10923.823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MVFAKFASLVFVQWKDSKLVKILSKIHLNPKHFLTKEYSKHVAGQSKKDD
GFQPWCRFHYNKFMWGVDISDQHNGAYRTQHR
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mRNA from alignment at Ecto-sp13_S_contig10923:1279..1707+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10923.823.1 ID=mRNA_Ecto-sp13_S_contig10923.823.1|Name=mRNA_Ecto-sp13_S_contig10923.823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10923:1279..1707+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTTCGCAAAGTTCGCGTCCTTGGTGTTCGTGCAGTGGAAGGATTC
CAAGCTCGTCAAAATTTTGTCCAAAATCCACCTCAACCCGAAGCACTTTC
TAACGAAGGAGTACAGGTGGGCGCGGTGTTTTTGACGTGCGTATGGTTCT
GATATTCTGGGCACGACATGTGTCCAGGGGTTGGTTATACAGTTGTGTAT
GTGTCTAGACGCTGCTGAGGGTCATACCCCGTTCATGCTGACACAGAACT
CCATTTATTCGGCCCCGTGCGCTCTCGCTGTATTCGTCCACACCGACAGC
AAGCACGTGGCGGGGCAGTCGAAGAAGGACGACGGCTTCCAGCCTTGGTG
TCGCTTCCACTACAACAAGTTCATGTGGGGAGTAGACATCTCGGACCAGC
ACAACGGTGCGTACCGGACACAACACCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10923:1279..1707+

>mRNA_Ecto-sp13_S_contig10923.823.1 ID=mRNA_Ecto-sp13_S_contig10923.823.1|Name=mRNA_Ecto-sp13_S_contig10923.823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10923:1279..1707+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTTCGCAAAGTTCGCGTCCTTGGTGTTCGTGCAGTGGAAGGATTC
CAAGCTCGTCAAAATTTTGTCCAAAATCCACCTCAACCCGAAGCACTTTC
TAACGAAGGAGTACAGCAAGCACGTGGCGGGGCAGTCGAAGAAGGACGAC
GGCTTCCAGCCTTGGTGTCGCTTCCACTACAACAAGTTCATGTGGGGAGT
AGACATCTCGGACCAGCACAACGGTGCGTACCGGACACAACACCGT
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