mRNA_Ecto-sp13_S_contig10920.821.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10920.821.1
Unique NamemRNA_Ecto-sp13_S_contig10920.821.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10920.821.1 vs. uniprot
Match: D7FZJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ1_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 5.660e-51
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:  316 KTVRVVNFNVYMGYDRRGEDNTFRVGRLLKDLEADIAGLQETGLMRLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPVL 579
            +TVRVVNFNVYMGYDRRGEDNTFRVGRLLKDLEADIAGLQETGLMRLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPVL
Sbjct:   13 RTVRVVNFNVYMGYDRRGEDNTFRVGRLLKDLEADIAGLQETGLMRLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPVL 100
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BLAST of mRNA_Ecto-sp13_S_contig10920.821.1 vs. uniprot
Match: A0A1G0AB12_9EURY (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Euryarchaeota archaeon RBG_19FT_COMBO_69_17 TaxID=1797984 RepID=A0A1G0AB12_9EURY)

HSP 1 Score: 57.0 bits (136), Expect = 4.230e-6
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:  310 TSKTVRVVNFNVYMGYDRRGEDNTFRVGRLLKDLEADIAGLQETGLMRLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPVL 579
            T+  +RV+ +NV+ G+   G  +  R+  +++    D+ GLQE+  +R+T G     G +A   G   A   P  E T+G A+LSRLP+L
Sbjct:  411 TTDVLRVMTYNVHQGFGADGRLDVGRIADVVRHGNPDLVGLQESDTVRVTSGGVDVVGYLASTLGYHAAYGPPTREQTYGVALLSRLPIL 500
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BLAST of mRNA_Ecto-sp13_S_contig10920.821.1 vs. uniprot
Match: A0A0A8L1B7_9SACH (WGS project CCBQ000000000 data, contig 00107 n=1 Tax=Kluyveromyces dobzhanskii CBS 2104 TaxID=1427455 RepID=A0A0A8L1B7_9SACH)

HSP 1 Score: 56.6 bits (135), Expect = 6.140e-6
Identity = 28/82 (34.15%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:  337 FNVYMGYDRRGEDNTFRVGRLLKDLEADIAGLQETGLMRLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPVLR 582
            + ++ G+D     +  R+  L+KD++ DI GL ET   R+T GNR     +A   GM         + TWGCA+LS+ P+++
Sbjct:  714 WTIHFGFDNDLWASEDRMAHLIKDMQLDIVGLLETDTQRITTGNRDLTAKMAHDLGMYADYGPGPNKHTWGCALLSKFPIIK 795
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BLAST of mRNA_Ecto-sp13_S_contig10920.821.1 vs. uniprot
Match: A0A058Z8K2_FONAL (Uncharacterized protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z8K2_FONAL)

HSP 1 Score: 56.6 bits (135), Expect = 6.300e-6
Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:  307 ATSKTVRVVNFNVYMGYDRRGEDNTFRVGRLLKDLEADIAGLQETGLMRLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPVLR 582
            A   T+ V  + ++ GYD     +  R+ RL++D++ D+ GL E+  MR  +GNR     +    GM         E TWGCA+LSR P++R
Sbjct:  804 ANMPTLTVGIWTIHFGYDNEMWLSHERMARLIEDMDIDVIGLLESDTMRSFIGNRDVPLQLGERLGMYADYGPGPLEHTWGCAMLSRYPIVR 895
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BLAST of mRNA_Ecto-sp13_S_contig10920.821.1 vs. uniprot
Match: A0A7C3CGY4_9CHLR (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3CGY4_9CHLR)

HSP 1 Score: 55.8 bits (133), Expect = 1.040e-5
Identity = 34/93 (36.56%), Postives = 47/93 (50.54%), Query Frame = 1 
Query:  301 ADATSKTVRVVNFNVYMGYDRRGEDNTFRVGRLLKDLEADIAGLQETGLMRLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPVL 579
            A+ T+   RV+ FN+  GY   G+        L++ + ADI GLQE+   RL+  N    G  A A GM      P    T+G A+LSR P+L
Sbjct:  415 AEETAFQARVLTFNIQQGYRADGQKGWEDQLALMRQVNADIIGLQESDTARLSGANNDLVGYFAHALGMEAYYGPPTVNGTFGIALLSRYPIL 507
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BLAST of mRNA_Ecto-sp13_S_contig10920.821.1 vs. uniprot
Match: A0A1F9Z911_9EURY (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Euryarchaeota archaeon RBG_16_68_13 TaxID=1797982 RepID=A0A1F9Z911_9EURY)

HSP 1 Score: 53.5 bits (127), Expect = 6.360e-5
Identity = 31/91 (34.07%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:  304 DATSKTVRVVNFNVYMGYDRRGEDNTFRVGRLLKDLEADIAGLQETGLMRLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPV 576
            D  +  +RV+ FNV+ G+D  G  +   +  +++    D+  LQE+  +R+T G     G +A   G   A   P  E T+G AILSRLP+
Sbjct:  409 DPGTDLLRVMTFNVHQGFDASGRLDVGGITDVVRLANPDLLALQESDTVRVTSGGVDLVGYIAGTLGYHAAYGPPTREQTYGVAILSRLPI 499
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BLAST of mRNA_Ecto-sp13_S_contig10920.821.1 vs. uniprot
Match: A0A074WHM4_9PEZI (Uncharacterized protein n=40 Tax=Aureobasidium TaxID=5579 RepID=A0A074WHM4_9PEZI)

HSP 1 Score: 53.5 bits (127), Expect = 6.790e-5
Identity = 29/91 (31.87%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:  307 ATSKTVRVVNFNVYMGYDRRGEDNTFRVGRLLKDLEADIAGLQETGLMRLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPVL 579
            A  K+V    +  + G D     +  R+G L+K++E D+ GL E+   R+ +GNR     +A   GM +       + TWGCA+LS+ P++
Sbjct:  680 APEKSVTAGIWTTHFGLDNPMWTSERRIGALVKEMELDVLGLLESDTQRIIMGNRDSTQYLAEELGMYVDYGPGPNKHTWGCALLSKFPIV 770
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BLAST of mRNA_Ecto-sp13_S_contig10920.821.1 vs. uniprot
Match: A0A1F9Z177_9EURY (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Euryarchaeota archaeon RBG_16_67_27 TaxID=1797980 RepID=A0A1F9Z177_9EURY)

HSP 1 Score: 53.1 bits (126), Expect = 8.590e-5
Identity = 29/86 (33.72%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:  322 VRVVNFNVYMGYDRRGEDNTFRVGRLLKDLEADIAGLQETGLMRLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPVL 579
            +RV+ FNV+ G+   G  +  R+  +++    D+  LQE+  +RLT G     G ++ + G  +A   P  E T+G A+LSRLP++
Sbjct:  415 LRVMTFNVHQGFGADGLLDVSRIADVVRLASPDVLALQESDTVRLTNGGVDLVGYLSASLGYHVAYGPPTREQTYGVAVLSRLPIV 500
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10920.821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FZJ1_ECTSI5.660e-5198.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1G0AB12_9EURY4.230e-634.44Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A0A8L1B7_9SACH6.140e-634.15WGS project CCBQ000000000 data, contig 00107 n=1 T... [more]
A0A058Z8K2_FONAL6.300e-634.78Uncharacterized protein n=1 Tax=Fonticula alba Tax... [more]
A0A7C3CGY4_9CHLR1.040e-536.56Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A1F9Z911_9EURY6.360e-534.07Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A074WHM4_9PEZI6.790e-531.87Uncharacterized protein n=40 Tax=Aureobasidium Tax... [more]
A0A1F9Z177_9EURY8.590e-533.72Endo/exonuclease/phosphatase domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10920contigEcto-sp13_S_contig10920:1727..3661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop1
Start0
Seed ortholog score60.5
Seed ortholog evalue1.1e-06
Seed eggNOG ortholog552467.XP_003193328.1
Preferred nameCWH43
Model size597
Hectar predicted targeting categorychloroplast
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0005933,GO:0005934,GO:0005935,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019637,GO:0030427,GO:0031224,GO:0031226,GO:0031505,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045017,GO:0045229,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
Exons3
EggNOG free text desc.Frag1/DRAM/Sfk1 family
EggNOG OGs38F49@33154,3NVQ6@4751,3UXX6@5204,3VEU9@5234,KOG3979@1,KOG3979@2759
Cds size597
COG Functional cat.T
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462563.5858176-CDS-Ecto-sp13_S_contig10920:1726..18881681462563.5858176-CDS-Ecto-sp13_S_contig10920:1726..1888Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10920 1727..1888 -
1681462563.6007667-CDS-Ecto-sp13_S_contig10920:2873..29901681462563.6007667-CDS-Ecto-sp13_S_contig10920:2873..2990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10920 2874..2990 -
1681462563.6106226-CDS-Ecto-sp13_S_contig10920:3343..36611681462563.6106226-CDS-Ecto-sp13_S_contig10920:3343..3661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10920 3344..3661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10920.821.1prot_Ecto-sp13_S_contig10920.821.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10920 1727..3661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10920.821.1

>prot_Ecto-sp13_S_contig10920.821.1 ID=prot_Ecto-sp13_S_contig10920.821.1|Name=mRNA_Ecto-sp13_S_contig10920.821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
RDSRTVPPPSSPSYTAAAAPAAAAAAAVTIAIAAGLALGAPSAPAPAAAA
AACHTNVRLRPDSNSSSSSGQGPVSSSAGAVELDGLAGVRRDLRAAGSEL
ADATSKTVRVVNFNVYMGYDRRGEDNTFRVGRLLKDLEADIAGLQETGLM
RLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPVLRCALR*
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mRNA from alignment at Ecto-sp13_S_contig10920:1727..3661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10920.821.1 ID=mRNA_Ecto-sp13_S_contig10920.821.1|Name=mRNA_Ecto-sp13_S_contig10920.821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1935bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10920:1727..3661- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGACAGCCGTACTGTGCCGCCGCCGTCGTCGCCATCCTACACTGCTGC
TGCTGCTCCTGCTGCTGCTGCTGCCGCTGCCGTTACTATCGCTATAGCGG
CCGGCCTGGCTCTCGGCGCACCGTCAGCCCCGGCGCCAGCAGCAGCAGCA
GCAGCATGTCACACCAACGTGCGCTTACGACCAGACAGCAACAGCAGCAG
CAGCAGCGGTCAAGGCCCGGTTTCGAGCTCCGCGGGGGCGGTGGAATTGG
ACGGGCTTGCTGGCGTGAGGCGCGATTTGCGTGCCGCCGGCAGCGAACTT
GCGGATGCAACGTCTAAGGTAACTACGATAGAACAACGCCAACAATCGAA
TACACAACCCGCAACCACAGCCACAACCATAACAACGACAACATCAACAA
CGACCAAAGCAATGTTTCTTCGGCAGAATCGTGCTTGCAGTGTTTGGCTC
TCAGCACAAATCACAGCTCAGCCGTTGGCGTGGGAAATTGACGCCACGCG
CTCCCTGCTGCTCCGAACAGCCATCGTGCCGGCTCAGGTCCGGTCCAAGT
CGATCAGTGTCATTCTTGTGCCAACATCAACCAACCCGCAGTCGGTGAGG
GTGGTGAACTTCTCAGTGTGTGAATACGGGTCGATCACTTTCAATTTTGA
ACAAAATCAACCGACAAGCAGACGGTGAGGGTGGTGAACTTCAACGTGTA
CATGGGCTACGACCGAAGGGGGGAGGACAATACCTTCCGGGTGGGCAGGC
TTCTGAAGGACCTTGAGGCCGACATCGCTGGACTGCAGGTGAATTTCGTT
GTTTTTGTTGTTGTTGTCGTTGATCTTGATGTTGTCGGTGGTGTCTCGGT
GTTGCTGTTGCTGTTCTTGATACTGTGTTTGTTGTTGTTCTTGTTGTTGC
GGCTGTTTGATGTGATCGTTGTTGTTATCTTTCTTGTTCATAGGCTTTTG
TTGTGGTTGTTGTTGCTGCTTTTGGGGTCGCTGTTGTAGTTGATGGTGAT
GGGGCTGCTGCTGCTCCTGCTGCTGTTGTTGTTGTCGTTGATGATGCGGC
TGTTTGTTGTAGTCGTTGCTTTTGTTCTTCTTGTTGTTCTTGATATTGAT
GGCCATTGTTACTTTTGCGGTCGCTAGTGTTATTGATCAAGGTTCGGTGT
TGTTTGTTGTGGTTGTCGTTGCCGCTGCTGTTGTTTTTGTTGGCCTGAGG
GCGGGAACGACTTTAATTTTGAAATCAAACTAGTCGCCCTTGCACACCGC
GTGCCCGCCTAGGCAGAAGGATGTATCGCCGTGTAGGAGGGTCACGTTTC
AGGTACCGTAGGTGACATGCCGTAGGATACCATACCCCCTCCTGGGAGCA
ATGATTTGTGGACGTGTGGTCAATGGTCTAACCGCTAAGGCGCGCACAAC
ATGCGTCCTCGTCTGATACACCGTCACCTCGGTTGGGTTGTAGGGAACCG
GGCGCTGACGCCAATACAACATCCAATCCAGTGCAAATCCCTCCGGGCAA
TCCTCTCCCTGGAAACACTGCTCCGTGCTCTCGAGGACGCGTGGTCGATG
GTCTCACCGCTAAGGCGTGCAAATCATGAGCACGCCACCCGCCCCCCCCC
CCACTCCGTGATGTGAGAGCCTGGTCGGGTGAGAATCCGGCGTGCTCCGT
CCCGGCTTTGTACGGATGCAAGGCCAACGGCCAAACCACTTACTACGGCA
TGCACGGCTCTAAGCACACCCCGACCTCTCACCCCTAAAAATGTTTTCCA
TCTTGGTCGTACGTTTCTTCTAGGAAACCGGGCTCATGCGATTGACCCTG
GGCAATCGGCACTACGCCGGGGCGGTGGCGAGGGCTGCCGGGATGGTGCT
GGCCGCGGCGGCGCCGGTGGCGGAGGACACCTGGGGCTGCGCGATCTTAT
CGCGTCTTCCGGTGCTCAGGTGCGCACTCAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10920:1727..3661-

>mRNA_Ecto-sp13_S_contig10920.821.1 ID=mRNA_Ecto-sp13_S_contig10920.821.1|Name=mRNA_Ecto-sp13_S_contig10920.821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10920:1727..3661- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGACAGCCGTACTGTGCCGCCGCCGTCGTCGCCATCCTACACTGCTGC
TGCTGCTCCTGCTGCTGCTGCTGCCGCTGCCGTTACTATCGCTATAGCGG
CCGGCCTGGCTCTCGGCGCACCGTCAGCCCCGGCGCCAGCAGCAGCAGCA
GCAGCATGTCACACCAACGTGCGCTTACGACCAGACAGCAACAGCAGCAG
CAGCAGCGGTCAAGGCCCGGTTTCGAGCTCCGCGGGGGCGGTGGAATTGG
ACGGGCTTGCTGGCGTGAGGCGCGATTTGCGTGCCGCCGGCAGCGAACTT
GCGGATGCAACGTCTAAGACGGTGAGGGTGGTGAACTTCAACGTGTACAT
GGGCTACGACCGAAGGGGGGAGGACAATACCTTCCGGGTGGGCAGGCTTC
TGAAGGACCTTGAGGCCGACATCGCTGGACTGCAGGAAACCGGGCTCATG
CGATTGACCCTGGGCAATCGGCACTACGCCGGGGCGGTGGCGAGGGCTGC
CGGGATGGTGCTGGCCGCGGCGGCGCCGGTGGCGGAGGACACCTGGGGCT
GCGCGATCTTATCGCGTCTTCCGGTGCTCAGGTGCGCACTCAGATGA
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