mRNA_Ecto-sp13_S_contig1091.814.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1091.814.1
Unique NamemRNA_Ecto-sp13_S_contig1091.814.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1091.814.1 vs. uniprot
Match: D7FP91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP91_ECTSI)

HSP 1 Score: 808 bits (2088), Expect = 1.120e-284
Identity = 497/756 (65.74%), Postives = 511/756 (67.59%), Query Frame = 2 
Query:  506 MRVLKGRYKTQPRIAKSISMSALHRLADPLMGYDSVEALAPKERTLRREYVERRLGQALASGNPGGQGRLLNTTRPSPSRPNNTVLGRCSSDRSIPHQTPIAISVNTVSLQDRRQRSIGSTAVQQRRGYRPGSRWERSKTQEFSASPVLRLRASGGRRAKPPLRRKRVATMRSVNGWVNEADPASVRRQNSLDRRFIALRKKRNRKAKGKRKDSRPLAHSSGATARDSRAFDGNTFLTEVETDVVSVPFGVTRTSSGDDRSGGRVRDSQEQRRRKGGETNPARQYPGGRRRVSVSGVVRKPQTRGQLGRAGRGALSTNTTRRRSTESDPAITGRGRSDVARRMGGRTKSVGALDRFQTEKLNRGHVRASSRGREGGDPKRRQAPPHHSGDLDMERVVAADGASQWAPGNPGEAWTLSPSSRVDISHTTTELKLAVSTGDDTSAHGTSTTLAPAWGVPGSHSVGPLREDIEVRLAWQEDEAGTSSRPCSEWQLLRRNEKSSSRSAKMLRSFENKVGSPLQLRQLHQPTSVASNDEPASQLLLSQNSGPGDRWRPPDGLSQRRSDTKEPHPSESRLALMHHRPSSKSWVHRRSLPSLLSDTTEPPSSRAGTPSTSTLTRGSPTAXXXXXXXXXXXXXXRRA-SLEEPSGLMQQLDKNHAVTVGDTWGGGLSRRGAGKRRDEDDEGVEGVSAETEATGRGGMPSVVGCVGVGGDGATLTAAARAGSRGQESTSSGRLLSNAIPKPLLYVGSGGGFRLRS 2770
            MRVLKGRYKTQPRIAKS SMSALHRLADPLMGYDS+EALAPKERTLRRE VERRLGQALASGNPGGQGRLLNTTRPS  R NNTVLGR SS  SIP QTP+AISVN VSLQDRRQRSIGSTAVQQRRGYRPGSRWERSKTQE + SP+LRLRASGGRR KP LRRKRVATMRSVNGWV EADPAS+RRQNSLDRRFIALR+KRNRK KGKRKDSRPLAHSSGATARDSRAFDG+TFLTEVETDV                                                                                                                                                                                      TT ELKL VSTGDDTSAHGTSTTLAPAWG PGSHSVGPL    E RL WQE+EAGTSSRPCSEWQLLRRNEKSSSR AKML SFENKVGSPLQLRQ H PTSVASNDEPA+QLLLS+NSGPGDRWRPPD  S RRSDTKEPHPSESRLALMHHRPSSKSWVHRRSLPSLLS+TTEP                    XXXXXXXXXXX   RR  SL+EPSGLMQQLDKN+AVTVGDTWGGGLSRRGAGKRRDEDD GVEGVSAE EA GRGG PSVVGCVGVGGDGATLTAAAR GSRGQ STSSGRLLS+AIPKPLLYVGSGGGFRLRS
Sbjct:    1 MRVLKGRYKTQPRIAKSTSMSALHRLADPLMGYDSIEALAPKERTLRRESVERRLGQALASGNPGGQGRLLNTTRPS--RTNNTVLGRSSSGGSIPQQTPMAISVNAVSLQDRRQRSIGSTAVQQRRGYRPGSRWERSKTQEIAVSPLLRLRASGGRRVKPTLRRKRVATMRSVNGWVKEADPASMRRQNSLDRRFIALREKRNRKPKGKRKDSRPLAHSSGATARDSRAFDGSTFLTEVETDV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAELKLGVSTGDDTSAHGTSTTLAPAWGSPGSHSVGPL----EARLTWQENEAGTSSRPCSEWQLLRRNEKSSSRPAKMLHSFENKVGSPLQLRQQHPPTSVASNDEPAAQLLLSENSGPGDRWRPPDRSSPRRSDTKEPHPSESRLALMHHRPSSKSWVHRRSLPSLLSNTTEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGRRRPSLDEPSGLMQQLDKNYAVTVGDTWGGGLSRRGAGKRRDEDDGGVEGVSAEAEAAGRGGTPSVVGCVGVGGDGATLTAAARPGSRGQGSTSSGRLLSSAIPKPLLYVGSGGGFRLRS 568
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1091.814.1 vs. uniprot
Match: A0A6H5L2K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2K5_9PHAE)

HSP 1 Score: 720 bits (1859), Expect = 8.570e-251
Identity = 445/750 (59.33%), Postives = 460/750 (61.33%), Query Frame = 2 
Query:  521 GRYKTQPRIAKSISMSALHRLADPLMGYDSVEALAPKERTLRREYVERRLGQALASGNPGGQGRLLNTTRPSPSRPNNTVLGRCSSDRSIPHQTPIAISVNTVSLQDRRQRSIGSTAVQQRRGYRPGSRWERSKTQEFSASPVLRLRASGGRRAKPPLRRKRVATMRSVNGWVNEADPASVRRQNSLDRRFIALRKKRNRKAKGKRKDSRPLAHSSGATARDSRAFDGNTFLTEVETDVVSVPFGVTRTSSGDDRSGGRVRDSQEQRRRKGGETNPARQYPGGRRRVSVSGVVRKPQTRGQLGRAGRGALSTNTTRRRSTESDPAITGRGRSDVARRMGGRTKSVGALDRFQTEKLNRGHVRASSRGREGGDPKRRQAPPHHSGDLDMERVVAADGASQWAPGNPGEAWTLSPSSRVDISHTTTELKLAVSTGDDTSAHGTSTTLAPAWGVPGSHSVGPLREDIEVRLAWQEDEAGTSSRPCSEWQLLRRNEKSSSRSAKMLRSFENKVGSPLQLRQLHQPTSVASNDEPASQLLLSQNSGPGDRWRPPDGLSQRRSDTKEPHPSESRLALMHHRPSSKSWVHRRSLPSLLSDTTEPPSSRAGTPSTSTLTRGSPTAXXXXXXXXXXXXXXRRASLEEPSGLMQQLDKNHAVTVGDTWGGGLSRRGAGKRRDEDDEGVEGVSAETEATGRGGMPSVVGCVGVGGDGATLTAAARAGSRGQESTSSGRLLSNAIPKPLLYVGSGGGFRLRS 2770
            GRYKTQPRI KS SMSALHRLADPLMGYDSVEALAPKERTLRRE VER              GRLLNTTRPSPSRPNNT+LGRCSS  S+PHQTP+A SVN V L DRRQRSIGST VQQRR                                         ATMRSVNGWV EADPAS+RRQN LDRRFIALR+KRNRK KGKRKDSRPLAHSSGATARDSRAFDG+TFLTEVETDV                                                                                                                                                                                      TT ELKLA STGDDTSAHGTS+TLAPAWGVPGSHSVGPLRED E R  W+E+EAGTSSRPCSEWQLLRRNEKSSSRSAKML SFENKVGSPL  RQ HQPTSVASNDEPA+QLLLS+NSGPGDRWRPPD   QRRSDTKEPHPSESRLALMHHRPSSKS  HRRSLPSLLSDTTEPPSSRAGTPSTSTLTRGSP A              RRASL++P GLMQQLDKN+AVTVGDTWGGGLSRRGA KRRDEDD  VEGVSAETEATGR G  SVVGCVGVGGDGATLTAAAR GSR Q +TSSGRLLSNAIPKPLLYVGSGGGFRLRS
Sbjct:    7 GRYKTQPRITKSTSMSALHRLADPLMGYDSVEALAPKERTLRRESVER--------------GRLLNTTRPSPSRPNNTILGRCSSGCSVPHQTPMATSVNAVGLPDRRQRSIGSTTVQQRR-----------------------------------------ATMRSVNGWVKEADPASMRRQNPLDRRFIALREKRNRKHKGKRKDSRPLAHSSGATARDSRAFDGSTFLTEVETDV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAELKLAASTGDDTSAHGTSSTLAPAWGVPGSHSVGPLREDTEARSGWKENEAGTSSRPCSEWQLLRRNEKSSSRSAKMLLSFENKVGSPLHWRQQHQPTSVASNDEPAAQLLLSENSGPGDRWRPPDRSFQRRSDTKEPHPSESRLALMHHRPSSKSCAHRRSLPSLLSDTTEPPSSRAGTPSTSTLTRGSPAAAAGGGRAIPRKRGRRRASLDKPIGLMQQLDKNYAVTVGDTWGGGLSRRGAEKRRDEDDGSVEGVSAETEATGRRGTLSVVGCVGVGGDGATLTAAARPGSRVQGNTSSGRLLSNAIPKPLLYVGSGGGFRLRS 519
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1091.814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP91_ECTSI1.120e-28465.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2K5_9PHAE8.570e-25159.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1091contigEcto-sp13_S_contig1091:10209..14714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2773
Hectar predicted targeting categoryother localisation
Exons6
Cds size2676
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1091.814.1prot_Ecto-sp13_S_contig1091.814.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1091 10209..14617 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462563.0753977-CDS-Ecto-sp13_S_contig1091:10208..110581681462563.0753977-CDS-Ecto-sp13_S_contig1091:10208..11058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1091 10209..11058 -
1681462563.0871205-CDS-Ecto-sp13_S_contig1091:11563..117031681462563.0871205-CDS-Ecto-sp13_S_contig1091:11563..11703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1091 11564..11703 -
1681462563.1044633-CDS-Ecto-sp13_S_contig1091:11944..129981681462563.1044633-CDS-Ecto-sp13_S_contig1091:11944..12998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1091 11945..12998 -
1681462563.1130562-CDS-Ecto-sp13_S_contig1091:13261..133261681462563.1130562-CDS-Ecto-sp13_S_contig1091:13261..13326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1091 13262..13326 -
1681462563.121407-CDS-Ecto-sp13_S_contig1091:13728..138721681462563.121407-CDS-Ecto-sp13_S_contig1091:13728..13872Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1091 13729..13872 -
1681462563.1301425-CDS-Ecto-sp13_S_contig1091:14194..146171681462563.1301425-CDS-Ecto-sp13_S_contig1091:14194..14617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1091 14195..14617 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462563.1399434-UTR-Ecto-sp13_S_contig1091:14617..147141681462563.1399434-UTR-Ecto-sp13_S_contig1091:14617..14714Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1091 14618..14714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1091.814.1

>prot_Ecto-sp13_S_contig1091.814.1 ID=prot_Ecto-sp13_S_contig1091.814.1|Name=mRNA_Ecto-sp13_S_contig1091.814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=892bp
MVTCWLCGYRGPDEGTECAVCGQPHDRARGGELERSAAGSRLGQTNGGLW
YENPPQKPRIGAQATSRCKSIPGGDRSTDLNPDLRYLLNLIPEQQNRRRR
AEDMVRATGACLTPVRVDGDGCDPDVVYIRPRVDPTMRVLKGRYKTQPRI
AKSISMSALHRLADPLMGYDSVEALAPKERTLRREYVERRLGQALASGNP
GGQGRLLNTTRPSPSRPNNTVLGRCSSDRSIPHQTPIAISVNTVSLQDRR
QRSIGSTAVQQRRGYRPGSRWERSKTQEFSASPVLRLRASGGRRAKPPLR
RKRVATMRSVNGWVNEADPASVRRQNSLDRRFIALRKKRNRKAKGKRKDS
RPLAHSSGATARDSRAFDGNTFLTEVETDVVSVPFGVTRTSSGDDRSGGR
VRDSQEQRRRKGGETNPARQYPGGRRRVSVSGVVRKPQTRGQLGRAGRGA
LSTNTTRRRSTESDPAITGRGRSDVARRMGGRTKSVGALDRFQTEKLNRG
HVRASSRGREGGDPKRRQAPPHHSGDLDMERVVAADGASQWAPGNPGEAW
TLSPSSRVDISHTTTELKLAVSTGDDTSAHGTSTTLAPAWGVPGSHSVGP
LREDIEVRLAWQEDEAGTSSRPCSEWQLLRRNEKSSSRSAKMLRSFENKV
GSPLQLRQLHQPTSVASNDEPASQLLLSQNSGPGDRWRPPDGLSQRRSDT
KEPHPSESRLALMHHRPSSKSWVHRRSLPSLLSDTTEPPSSRAGTPSTST
LTRGSPTAAAGGGGAILRKRGRRRASLEEPSGLMQQLDKNHAVTVGDTWG
GGLSRRGAGKRRDEDDEGVEGVSAETEATGRGGMPSVVGCVGVGGDGATL
TAAARAGSRGQESTSSGRLLSNAIPKPLLYVGSGGGFRLRS*
back to top

mRNA from alignment at Ecto-sp13_S_contig1091:10209..14714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1091.814.1 ID=mRNA_Ecto-sp13_S_contig1091.814.1|Name=mRNA_Ecto-sp13_S_contig1091.814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4506bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1091:10209..14714- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGAATGGGTCGCGAGACAGAAGTCTGGTGGTTTCTCACAGCAGCAGCG
GCTGCCGCGGGAGCTCTTGAAGGCACGTCTCGCGGCGCATTGATGCCATG
GTCACGTGCTGGCTTTGTGGCTACCGCGGGCCCGACGAGGGCACCGAGTG
CGCGGTGTGCGGCCAGCCACACGATAGGGCGAGGGGTGGAGAACTGGAAA
GGAGCGCAGCAGGATCACGGCTGGGGCAGACTAATGGCGGTTTGTGGTAC
GAAAACCCGCCACAGAAGCCACGCATCGGGGCGCAAGCCACGTCGCGGTG
CAAAAGCATTCCCGGGGGGGACAGATCGACCGATCTCAATCCAGATCTAC
GATACCTCCTGAACCTGATCCCCGAACAACAGAACAGGAGGAGGAGGGCA
GAGGATATGGTGCGAGCCACGGGTGCGTGCTTGACCCCTGTGCGGGTAGA
TGGCGATGGATGCGACCCCGATGTGGTGTACATTCGACCGCGCGTTGATC
CTACCATGCGAGTCCTGAAGGTGCGGATCGGATCCCATCTCTGCTGCAGC
CAGCGAAGATGGCGTAGACTATGCACTTTTGCTTTCTACACGTACAACCT
CGGCGTTGCAGCATGCGCAAGGCGCTCCTAAACTGCAGATGGCCTGGACC
CTTATTCTTGAAGAGAGCGTACAGCAAACGTGGGTCTTTCAGCGCCCCAC
TCTGTACGATTGTACCGTCTCACCACGTGCTGCTACTGCTGTTCGTTGTC
GGGTGCATGCCCAGCGACCCCAACGTAAAAAACGTAGCACACGGCTCTCC
CAAACAAGCACGGCGCCATTGTTCTGCGCGGTTTGAATCCAGGGACGATA
CAAGACGCAGCCTCGGATAGCTAAGTCGATATCAATGAGCGCCTTGCATC
GTTTGGCGGACCCGCTGATGGGCTACGACTCTGTAGAAGCTCTCGCGCCC
AAAGAACGTACGTTGCGACGGGAGTATGTCGAACGGGTGAGCCAAGATTC
TAGGGTATGCCACAAATGTTGCCTCTGGTGCGATGCTTCTGAAGAGTTTA
AACTACACTGTGGCCTGGACAACAGCATCTAAGAGTTCGAGATACTTGAT
CGTACCATTCACGGTGGCCAAGGCTGTCCACGAAAAACCTATCGAACGCT
TCGAGACGCTGGGCCTAGAAAGGTGTCCTGACAACAGTGAAGACCAATGT
GAAGAACGCATTTCTTGACGAATCATTGGGTGCATGTTGTGCATGCTTGT
CAGTCAGTCATAGCTGAAACCTCGTGACCACCTTCATGGCGAGATATTCG
ACGGCTTTGAAAGTATGGTGTAGCCGGAGAAGTGGAAACGATTTGCTTGT
ACGTCTCTCACACCCGCAATGTCTGCCGTTGAACCCAGCGACTGGGCCAA
GCCCTTGCCAGCGGAAACCCCGGCGGCCAGGGACGGTTGCTCAACACGAC
AAGGTTTGTGATCTTTCTACATCAGAACCAGCAAAGGATGGTACGGAAAA
AATTGGAAGTGCTATATCGTTCGTCCGTCTGCACCTGAAGACTTAAAGAG
CACGGGCTGCCTTTCCAGCCCTTCAAAGAGTAGAAAAATCTCACTGGCGC
ACGAGAGAAAGCCGAGAAGTAAGACGTTACACTTGAAAGCAAACTACTAC
GCTATAGGTTCTCGTGTAACGTGTGATCTGTGGTTGCGTTTCCCGTTGCG
TTTTACCTCACGACAGGCCATCACCATCACGACCGAACAACACGGTTCTC
GGAAGATGTTCTTCCGACCGCAGCATCCCGCACCAGACGCCCATTGCAAT
CTCTGTGAATACGGTCAGCCTCCAAGATCGACGGCAAAGATCGATAGGAT
CAACAGCAGTTCAACAACGACGAGGGTATCGACCCGGCAGTCGTTGGGAG
CGTTCCAAAACGCAAGAATTTTCGGCATCGCCCGTGCTTCGGTTGCGGGC
AAGCGGGGGGCGGCGGGCGAAGCCACCTCTCAGGCGGAAAAGGGTAGCTA
CGATGCGGAGCGTTAACGGCTGGGTAAATGAGGCCGACCCTGCTTCCGTG
AGACGGCAGAACTCTCTAGATCGACGATTTATAGCCCTGAGGAAAAAGAG
GAACCGTAAAGCTAAGGGTAAAAGGAAGGACAGCCGCCCCCTCGCCCACT
CCAGTGGCGCCACCGCGCGAGATTCCCGTGCCTTCGACGGGAATACGTTC
TTGACGGAGGTTGAAACTGACGTGGTGAGTGTTCCTTTTGGGGTTACCAG
AACGAGTTCAGGCGATGACCGTAGCGGCGGCCGGGTGAGAGATTCTCAAG
AACAAAGGCGGCGGAAAGGCGGAGAAACGAACCCAGCGCGACAGTATCCA
GGGGGCCGGCGGAGAGTATCGGTTTCTGGGGTGGTGCGGAAACCACAGAC
TCGTGGGCAGTTGGGACGAGCGGGCAGGGGAGCCTTGTCGACAAACACCA
CCAGACGAAGATCAACAGAGTCAGACCCCGCGATAACAGGCAGGGGTCGG
TCCGATGTAGCACGGAGAATGGGCGGGAGGACCAAGTCGGTTGGTGCTCT
AGATCGCTTTCAGACAGAAAAATTGAACAGAGGCCACGTGCGTGCAAGCT
CTCGAGGACGCGAAGGTGGAGACCCAAAAAGGCGGCAAGCACCACCTCAT
CATTCCGGAGATCTGGACATGGAGCGGGTTGTGGCAGCAGATGGGGCTTC
TCAGTGGGCCCCCGGCAATCCCGGGGAAGCCTGGACTTTGTCGCCGTCGT
CGAGAGTAGACATCAGTCATGTCCCGCAGGCAAGCACTCATTGTGTATCG
TCCTCCGGTGAACTCTGCCACAAAAGACGCCCGCCATTCTGAAGGGATAC
ACGCATCAGCACAGCAACAACTTTCGAAGGGCGGCGTTAGAAACAGATGA
AACCCGCTCCAACTGCTGATCACTGTCGAATTAGCCTCATTCCTAATATT
CCCCTCTCTCTGCTACTTCCTCCCCGGATGTTTGCTTCCAAATCTTCTAT
TCTCACAACAGACGACGACGGAGCTCAAGTTAGCGGTCTCAACAGGAGAC
GACACCAGTGCGCACGGGACTAGCACCACACTGGCACCTGCTTGGGGTGT
TCCGGGCTCGCATTCTGTGGGCCCCCTTCGCGAGGATATAGAGGTCCGCC
TGTAAGTCAACTTGGTGTTTGTCAGAGGGCGCGAGGTGCACCACCTGGTC
TTGAGAGTTTCAAGCCACCAGTCAGTATGCCTCACAGAGGGTCAAATATA
TTTTTCAATATCGATAGCGTGAGTTTAGCCGATTCTGGGATACCCGCGTT
GCGGAAAAAGATTGGTGCTATTCGACAGCATGATAATACACGAACTTTGA
ACAGCCTGGGCAGAAAAGGCACAGGTAGTTTTTTGCGAAATCAAGGCAGA
CACATGTGCTGCACTTCTCGGTTTTGTTCTTTCGGAAAAACCTCTACGTC
TAGCACTTGTTCGCGCGCACGTATCTCGGCCGGGGTCAACGACCAATCAC
CTTATTAAAAGACGGTTCCCGTGGACGTTGGCGACACGGTCCGATGAACG
CCCGGACCAACACCACACTCACAATCAAGACACCTCTGTCGATGCAACCG
AACCAACCACTACACCCGGGCTTTGACGCCCTCACTTTCCGTCGATTGTC
AAACAGCGCGTGGCAGGAGGACGAGGCTGGCACATCTAGCCGCCCGTGCA
GCGAATGGCAGCTGTTGCGGCGCAACGAGAAATCCAGTTCTCGGTCGGCG
AAAATGCTCCGCTCCTTCGAGAACAAGGTTGGTTCCCCGCTCCAGCTGCG
TCAGCTACACCAGCCCACGTCGGTCGCCTCCAACGACGAGCCAGCGTCGC
AGCTGCTCCTATCGCAGAATAGTGGGCCTGGTGATCGGTGGCGCCCGCCC
GACGGGTTATCCCAACGACGAAGCGACACCAAGGAGCCCCATCCTTCAGA
GTCACGCTTGGCGCTGATGCACCACCGGCCGTCTTCTAAGAGCTGGGTCC
ACCGACGGAGCCTCCCTTCCCTCCTCAGCGATACCACGGAACCCCCGTCC
TCGCGTGCAGGGACGCCGTCCACGTCGACGCTCACTCGGGGGTCGCCGAC
CGCGGCGGCGGGGGGCGGCGGCGCGATTCTTAGGAAGCGGGGGAGGCGAC
GAGCATCCCTCGAAGAACCCAGCGGCCTGATGCAACAACTCGACAAGAAC
CATGCTGTAACGGTCGGGGACACCTGGGGCGGTGGGCTGTCACGCCGCGG
CGCGGGGAAGCGCCGAGATGAGGACGATGAAGGCGTCGAAGGGGTGTCGG
CGGAAACCGAAGCGACGGGCAGAGGGGGCATGCCGTCCGTTGTAGGGTGT
GTTGGGGTTGGGGGTGACGGGGCGACGCTAACAGCGGCAGCTCGTGCAGG
CAGTAGGGGCCAGGAAAGCACTTCGAGCGGGAGGTTGTTGTCGAATGCCA
TTCCCAAGCCGCTGCTGTACGTTGGAAGCGGCGGCGGGTTTAGGTTAAGG
TCGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1091:10209..14714-

>mRNA_Ecto-sp13_S_contig1091.814.1 ID=mRNA_Ecto-sp13_S_contig1091.814.1|Name=mRNA_Ecto-sp13_S_contig1091.814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2676bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1091:10209..14714- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCACGTGCTGGCTTTGTGGCTACCGCGGGCCCGACGAGGGCACCGA
GTGCGCGGTGTGCGGCCAGCCACACGATAGGGCGAGGGGTGGAGAACTGG
AAAGGAGCGCAGCAGGATCACGGCTGGGGCAGACTAATGGCGGTTTGTGG
TACGAAAACCCGCCACAGAAGCCACGCATCGGGGCGCAAGCCACGTCGCG
GTGCAAAAGCATTCCCGGGGGGGACAGATCGACCGATCTCAATCCAGATC
TACGATACCTCCTGAACCTGATCCCCGAACAACAGAACAGGAGGAGGAGG
GCAGAGGATATGGTGCGAGCCACGGGTGCGTGCTTGACCCCTGTGCGGGT
AGATGGCGATGGATGCGACCCCGATGTGGTGTACATTCGACCGCGCGTTG
ATCCTACCATGCGAGTCCTGAAGGGACGATACAAGACGCAGCCTCGGATA
GCTAAGTCGATATCAATGAGCGCCTTGCATCGTTTGGCGGACCCGCTGAT
GGGCTACGACTCTGTAGAAGCTCTCGCGCCCAAAGAACGTACGTTGCGAC
GGGAGTATGTCGAACGGCGACTGGGCCAAGCCCTTGCCAGCGGAAACCCC
GGCGGCCAGGGACGGTTGCTCAACACGACAAGGCCATCACCATCACGACC
GAACAACACGGTTCTCGGAAGATGTTCTTCCGACCGCAGCATCCCGCACC
AGACGCCCATTGCAATCTCTGTGAATACGGTCAGCCTCCAAGATCGACGG
CAAAGATCGATAGGATCAACAGCAGTTCAACAACGACGAGGGTATCGACC
CGGCAGTCGTTGGGAGCGTTCCAAAACGCAAGAATTTTCGGCATCGCCCG
TGCTTCGGTTGCGGGCAAGCGGGGGGCGGCGGGCGAAGCCACCTCTCAGG
CGGAAAAGGGTAGCTACGATGCGGAGCGTTAACGGCTGGGTAAATGAGGC
CGACCCTGCTTCCGTGAGACGGCAGAACTCTCTAGATCGACGATTTATAG
CCCTGAGGAAAAAGAGGAACCGTAAAGCTAAGGGTAAAAGGAAGGACAGC
CGCCCCCTCGCCCACTCCAGTGGCGCCACCGCGCGAGATTCCCGTGCCTT
CGACGGGAATACGTTCTTGACGGAGGTTGAAACTGACGTGGTGAGTGTTC
CTTTTGGGGTTACCAGAACGAGTTCAGGCGATGACCGTAGCGGCGGCCGG
GTGAGAGATTCTCAAGAACAAAGGCGGCGGAAAGGCGGAGAAACGAACCC
AGCGCGACAGTATCCAGGGGGCCGGCGGAGAGTATCGGTTTCTGGGGTGG
TGCGGAAACCACAGACTCGTGGGCAGTTGGGACGAGCGGGCAGGGGAGCC
TTGTCGACAAACACCACCAGACGAAGATCAACAGAGTCAGACCCCGCGAT
AACAGGCAGGGGTCGGTCCGATGTAGCACGGAGAATGGGCGGGAGGACCA
AGTCGGTTGGTGCTCTAGATCGCTTTCAGACAGAAAAATTGAACAGAGGC
CACGTGCGTGCAAGCTCTCGAGGACGCGAAGGTGGAGACCCAAAAAGGCG
GCAAGCACCACCTCATCATTCCGGAGATCTGGACATGGAGCGGGTTGTGG
CAGCAGATGGGGCTTCTCAGTGGGCCCCCGGCAATCCCGGGGAAGCCTGG
ACTTTGTCGCCGTCGTCGAGAGTAGACATCAGTCATACGACGACGGAGCT
CAAGTTAGCGGTCTCAACAGGAGACGACACCAGTGCGCACGGGACTAGCA
CCACACTGGCACCTGCTTGGGGTGTTCCGGGCTCGCATTCTGTGGGCCCC
CTTCGCGAGGATATAGAGGTCCGCCTCGCGTGGCAGGAGGACGAGGCTGG
CACATCTAGCCGCCCGTGCAGCGAATGGCAGCTGTTGCGGCGCAACGAGA
AATCCAGTTCTCGGTCGGCGAAAATGCTCCGCTCCTTCGAGAACAAGGTT
GGTTCCCCGCTCCAGCTGCGTCAGCTACACCAGCCCACGTCGGTCGCCTC
CAACGACGAGCCAGCGTCGCAGCTGCTCCTATCGCAGAATAGTGGGCCTG
GTGATCGGTGGCGCCCGCCCGACGGGTTATCCCAACGACGAAGCGACACC
AAGGAGCCCCATCCTTCAGAGTCACGCTTGGCGCTGATGCACCACCGGCC
GTCTTCTAAGAGCTGGGTCCACCGACGGAGCCTCCCTTCCCTCCTCAGCG
ATACCACGGAACCCCCGTCCTCGCGTGCAGGGACGCCGTCCACGTCGACG
CTCACTCGGGGGTCGCCGACCGCGGCGGCGGGGGGCGGCGGCGCGATTCT
TAGGAAGCGGGGGAGGCGACGAGCATCCCTCGAAGAACCCAGCGGCCTGA
TGCAACAACTCGACAAGAACCATGCTGTAACGGTCGGGGACACCTGGGGC
GGTGGGCTGTCACGCCGCGGCGCGGGGAAGCGCCGAGATGAGGACGATGA
AGGCGTCGAAGGGGTGTCGGCGGAAACCGAAGCGACGGGCAGAGGGGGCA
TGCCGTCCGTTGTAGGGTGTGTTGGGGTTGGGGGTGACGGGGCGACGCTA
ACAGCGGCAGCTCGTGCAGGCAGTAGGGGCCAGGAAAGCACTTCGAGCGG
GAGGTTGTTGTCGAATGCCATTCCCAAGCCGCTGCTGTACGTTGGAAGCG
GCGGCGGGTTTAGGTTAAGGTCGTGA
back to top