mRNA_Ecto-sp13_S_contig10905.808.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10905.808.1
Unique NamemRNA_Ecto-sp13_S_contig10905.808.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.690e-39
Identity = 72/75 (96.00%), Postives = 72/75 (96.00%), Query Frame = 1
Query:    1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWAVLGAGR 225
            MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDG SELAWWAV GA R
Sbjct: 1278 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGVSELAWWAVRGADR 1352          
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: D7FNX2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.740e-33
Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWAVLGAGR 225
            MLNLL+AVL+TAHGEV ANGEKEFHLARTRLILQSARAVAHRRIPPP NLVQL+VG LLD   ELAWW  L AGR
Sbjct:  105 MLNLLVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAWWVRLDAGR 179          
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.680e-21
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWAVLGA 219
            +LNLLIAVLSTAH EVY N EKEFHLAR RL++QSAR+VAHRR PPP NLV+L  G L+D  +E+ W  +L A
Sbjct: 1159 LLNLLIAVLSTAHDEVYVNAEKEFHLARARLVVQSARSVAHRRPPPPLNLVKLGFGVLIDVFTEI-WRFILWA 1230          
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 7.090e-20
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWAV 210
            +LNLLIAVLST HG+VYAN EKEFH AR RLI QSAR V+  R PPP NL++LV G LLD  +E+  W V
Sbjct: 1293 LLNLLIAVLSTTHGKVYANAEKEFHHARARLIYQSARVVSRSRPPPPLNLIKLVCGILLDAGTEV--WRV 1360          
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 9.590e-20
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWAVLGA 219
            +LNLLIAVLSTAH EVY N EKEFHLAR RL++QSA++VAH R PPP NL++L  G L+D  +E+ W  +L A
Sbjct:  527 LLNLLIAVLSTAHDEVYVNAEKEFHLARARLVVQSAQSVAHLRPPPPLNLIKLGFGVLIDLFTEI-WRFILWA 598          
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.330e-19
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASE 192
            +LNLLIAVLSTAH +VY NG+KEFHLAR +LI QSAR V  RR PPP NLV++V+G L+D  +E
Sbjct: 1358 LLNLLIAVLSTAHSKVYDNGDKEFHLARAKLIYQSARVVTRRRPPPPLNLVKVVLGTLIDATTE 1421          
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: A0A6H5K4M1_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.310e-16
Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWA 207
            +L LLIAVLST HG+VY N EKEFH AR   I QSAR V+  R PPP NL++LV G LLD A  + W A
Sbjct:  614 LLKLLIAVLSTTHGKVYDNAEKEFHHARACFIYQSARVVSRSRPPPPLNLIKLVCGILLD-AGTMLWRA 681          
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 8.120e-8
Identity = 29/54 (53.70%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLV 162
            MLNLL+AVLSTAH +V AN   E+ + R RLI      V   R+PPPFNL Q +
Sbjct: 1328 MLNLLVAVLSTAHAKVDANAGLEYKVTRARLIQHYVNVVEIDRLPPPFNLFQWI 1381          
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.820e-7
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 1
Query:    1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLL----------------DGASELAWWAVLG 216
            +LNLLIAVLST+H +V    ++EF +++ R+I      V    +PPPFNLVQL++   +                +    +A+W  LG
Sbjct: 1010 LLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILSLPVMVRDRSGQGTASTRAQEAVGRMAFWLALG 1097          
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.260e-5
Identity = 32/75 (42.67%), Postives = 34/75 (45.33%), Query Frame = 1
Query:    1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWAVLGAGR 225
            MLNLLIAVLSTAHGE                                     LV+GFLLDG SEL WWA + AGR
Sbjct: 1276 MLNLLIAVLSTAHGE-------------------------------------LVMGFLLDGVSELTWWAGVDAGR 1313          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JB40_9PHAE4.690e-3996.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FNX2_ECTSI1.740e-3384.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LH97_ECTSI1.680e-2167.12Ankyrin Repeat Transient Receptor Potential Channe... [more]
D8LH99_ECTSI7.090e-2065.71Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JTT3_9PHAE9.590e-2063.01Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LHA0_ECTSI1.330e-1967.19Transient Receptor Potential Channel. Partial sequ... [more]
A0A6H5K4M1_9PHAE4.310e-1660.87Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LDE6_9PHAE8.120e-853.70Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FLB1_ECTSI2.820e-734.09Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7FX79_ECTSI2.260e-542.67Ankyrin Repeat Transient Receptor Potential Channe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10905contigEcto-sp13_S_contig10905:2510..2948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score97.1
Seed ortholog evalue3.9e-18
Seed eggNOG ortholog2880.D8LH97
Model size228
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ion channel activity
EggNOG OGsKOG3614@1,KOG3614@2759
Cds size228
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462562.6492605-CDS-Ecto-sp13_S_contig10905:2509..25541681462562.6492605-CDS-Ecto-sp13_S_contig10905:2509..2554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10905 2510..2554 +
1681462562.6582034-CDS-Ecto-sp13_S_contig10905:2765..29481681462562.6582034-CDS-Ecto-sp13_S_contig10905:2765..2948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10905 2766..2948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10905.808.1prot_Ecto-sp13_S_contig10905.808.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10905 2510..2948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10905.808.1

>prot_Ecto-sp13_S_contig10905.808.1 ID=prot_Ecto-sp13_S_contig10905.808.1|Name=mRNA_Ecto-sp13_S_contig10905.808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNL
VQLVVGFLLDGASELAWWAVLGAGR*
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mRNA from alignment at Ecto-sp13_S_contig10905:2510..2948+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10905.808.1 ID=mRNA_Ecto-sp13_S_contig10905.808.1|Name=mRNA_Ecto-sp13_S_contig10905.808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=439bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10905:2510..2948+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAACCTTCTCATCGCCGTCCTCAGCACGGCTCACGGAGAGGTAAG GGATGCCCCCGGCAACAGCTTGGGGCAGTCCATCTTGTATGTGTAGTCCC TGGCGAATCCTTACTCAAGGCCGATGCGTACGCTAGCACGGCTGTCAGTT TGACACAAATACATCGATTGGCCGTCGTACCCTACAAGACATTCAGGCAG CGACCTGAAGTCTGCTACCCACAACAAGCATTTAAACCTGCTTCCCTGTT TTATAGGTATACGCCAACGGTGAAAAGGAATTCCACCTCGCCCGCACGAG GTTGATCCTACAGAGTGCGCGCGCGGTTGCACACCGACGCATTCCGCCAC CGTTCAATCTGGTCCAGCTGGTGGTGGGTTTCCTGTTGGATGGGGCCAGT GAGCTAGCTTGGTGGGCGGTGCTTGGTGCCGGCAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10905:2510..2948+

>mRNA_Ecto-sp13_S_contig10905.808.1 ID=mRNA_Ecto-sp13_S_contig10905.808.1|Name=mRNA_Ecto-sp13_S_contig10905.808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10905:2510..2948+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAACCTTCTCATCGCCGTCCTCAGCACGGCTCACGGAGAGGTATA
CGCCAACGGTGAAAAGGAATTCCACCTCGCCCGCACGAGGTTGATCCTAC
AGAGTGCGCGCGCGGTTGCACACCGACGCATTCCGCCACCGTTCAATCTG
GTCCAGCTGGTGGTGGGTTTCCTGTTGGATGGGGCCAGTGAGCTAGCTTG
GTGGGCGGTGCTTGGTGCCGGCAGGTAA
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