mRNA_Ecto-sp13_S_contig10905.808.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE) HSP 1 Score: 146 bits (368), Expect = 4.690e-39 Identity = 72/75 (96.00%), Postives = 72/75 (96.00%), Query Frame = 1
Query: 1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWAVLGAGR 225
MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDG SELAWWAV GA R
Sbjct: 1278 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGVSELAWWAVRGADR 1352
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: D7FNX2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI) HSP 1 Score: 129 bits (325), Expect = 1.740e-33 Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 1
Query: 1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWAVLGAGR 225
MLNLL+AVL+TAHGEV ANGEKEFHLARTRLILQSARAVAHRRIPPP NLVQL+VG LLD ELAWW L AGR
Sbjct: 105 MLNLLVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAWWVRLDAGR 179
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 1.680e-21 Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWAVLGA 219
+LNLLIAVLSTAH EVY N EKEFHLAR RL++QSAR+VAHRR PPP NLV+L G L+D +E+ W +L A
Sbjct: 1159 LLNLLIAVLSTAHDEVYVNAEKEFHLARARLVVQSARSVAHRRPPPPLNLVKLGFGVLIDVFTEI-WRFILWA 1230
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 7.090e-20 Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 1
Query: 1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWAV 210
+LNLLIAVLST HG+VYAN EKEFH AR RLI QSAR V+ R PPP NL++LV G LLD +E+ W V
Sbjct: 1293 LLNLLIAVLSTTHGKVYANAEKEFHHARARLIYQSARVVSRSRPPPPLNLIKLVCGILLDAGTEV--WRV 1360
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 9.590e-20 Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWAVLGA 219
+LNLLIAVLSTAH EVY N EKEFHLAR RL++QSA++VAH R PPP NL++L G L+D +E+ W +L A
Sbjct: 527 LLNLLIAVLSTAHDEVYVNAEKEFHLARARLVVQSAQSVAHLRPPPPLNLIKLGFGVLIDLFTEI-WRFILWA 598
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 1.330e-19 Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 1
Query: 1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASE 192
+LNLLIAVLSTAH +VY NG+KEFHLAR +LI QSAR V RR PPP NLV++V+G L+D +E
Sbjct: 1358 LLNLLIAVLSTAHSKVYDNGDKEFHLARAKLIYQSARVVTRRRPPPPLNLVKVVLGTLIDATTE 1421
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: A0A6H5K4M1_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M1_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 4.310e-16 Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWA 207
+L LLIAVLST HG+VY N EKEFH AR I QSAR V+ R PPP NL++LV G LLD A + W A
Sbjct: 614 LLKLLIAVLSTTHGKVYDNAEKEFHHARACFIYQSARVVSRSRPPPPLNLIKLVCGILLD-AGTMLWRA 681
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 8.120e-8 Identity = 29/54 (53.70%), Postives = 35/54 (64.81%), Query Frame = 1
Query: 1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLV 162
MLNLL+AVLSTAH +V AN E+ + R RLI V R+PPPFNL Q +
Sbjct: 1328 MLNLLVAVLSTAHAKVDANAGLEYKVTRARLIQHYVNVVEIDRLPPPFNLFQWI 1381
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 2.820e-7 Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 1
Query: 1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLL----------------DGASELAWWAVLG 216
+LNLLIAVLST+H +V ++EF +++ R+I V +PPPFNLVQL++ + + +A+W LG
Sbjct: 1010 LLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILSLPVMVRDRSGQGTASTRAQEAVGRMAFWLALG 1097
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI) HSP 1 Score: 50.4 bits (119), Expect = 2.260e-5 Identity = 32/75 (42.67%), Postives = 34/75 (45.33%), Query Frame = 1
Query: 1 MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGASELAWWAVLGAGR 225
MLNLLIAVLSTAHGE LV+GFLLDG SEL WWA + AGR
Sbjct: 1276 MLNLLIAVLSTAHGE-------------------------------------LVMGFLLDGVSELTWWAGVDAGR 1313 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10905.808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10905.808.1 >prot_Ecto-sp13_S_contig10905.808.1 ID=prot_Ecto-sp13_S_contig10905.808.1|Name=mRNA_Ecto-sp13_S_contig10905.808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp MLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLback to top mRNA from alignment at Ecto-sp13_S_contig10905:2510..2948+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10905.808.1 ID=mRNA_Ecto-sp13_S_contig10905.808.1|Name=mRNA_Ecto-sp13_S_contig10905.808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=439bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10905:2510..2948+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10905:2510..2948+ >mRNA_Ecto-sp13_S_contig10905.808.1 ID=mRNA_Ecto-sp13_S_contig10905.808.1|Name=mRNA_Ecto-sp13_S_contig10905.808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10905:2510..2948+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |