mRNA_Ecto-sp13_S_contig10905.807.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10905.807.1
Unique NamemRNA_Ecto-sp13_S_contig10905.807.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10905.807.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.150e-25
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 ILEFCDGVPARHRRXXXXXXXXXXXQANMATSARWASSKRSDTLDYEQGRGLKRVASAITRYLFYDTWNL 210
            ILEFCDGVPARHRRXXXXXXXXXXX     T+A+WASSKRSDT+DYEQGRGLKRVASAITRYLFYDTWNL
Sbjct: 1041 ILEFCDGVPARHRRXXXXXXXXXXXXXXXXTAAQWASSKRSDTVDYEQGRGLKRVASAITRYLFYDTWNL 1110
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BLAST of mRNA_Ecto-sp13_S_contig10905.807.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.920e-25
Identity = 52/70 (74.29%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 ILEFCDGVPARHRRXXXXXXXXXXXQANMATSARWASSKRSDTLDYEQGRGLKRVASAITRYLFYDTWNL 210
            ILEFCDGVPARHRR           QANMAT+ + ASSKRSD +DY QGRGLKRVASAITRYLFYDTWNL
Sbjct: 1039 ILEFCDGVPARHRRHRKNKHIKEGNQANMATAVQGASSKRSDMVDYGQGRGLKRVASAITRYLFYDTWNL 1108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10905.807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB40_9PHAE2.150e-2588.57Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FX79_ECTSI2.920e-2574.29Ankyrin Repeat Transient Receptor Potential Channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10905contigEcto-sp13_S_contig10905:576..1086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score106.3
Seed ortholog evalue5.9e-21
Seed eggNOG ortholog2880.D7FX79
Model size212
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2E7I3@1,2SE3W@2759
Cds size210
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462562.6002104-CDS-Ecto-sp13_S_contig10905:575..7571681462562.6002104-CDS-Ecto-sp13_S_contig10905:575..757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10905 576..757 +
1681462562.6116583-CDS-Ecto-sp13_S_contig10905:1058..10861681462562.6116583-CDS-Ecto-sp13_S_contig10905:1058..1086Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10905 1059..1086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10905.807.1prot_Ecto-sp13_S_contig10905.807.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10905 576..1086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10905.807.1

>prot_Ecto-sp13_S_contig10905.807.1 ID=prot_Ecto-sp13_S_contig10905.807.1|Name=mRNA_Ecto-sp13_S_contig10905.807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
ILEFCDGVPARHRRHRKNKHIKEGNQANMATSARWASSKRSDTLDYEQGR
GLKRVASAITRYLFYDTWNL
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mRNA from alignment at Ecto-sp13_S_contig10905:576..1086+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10905.807.1 ID=mRNA_Ecto-sp13_S_contig10905.807.1|Name=mRNA_Ecto-sp13_S_contig10905.807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=511bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10905:576..1086+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCTCGAGTTCTGCGACGGTGTACCAGCCCGTCACCGGCGGCACAGGAA
GAACAAGCACATCAAAGAGGGGAATCAGGCGAACATGGCTACTTCAGCCC
GGTGGGCGTCGAGCAAACGATCTGACACGCTTGACTATGAGCAAGGGAGG
GGCCTGAAGCGAGTGGCGTCTGCAATCACCAGGTGCTTCAATCGGTAGTT
TTCGTCCTCTTGATGCACCCGGTCTGGTTTCGCTTGCACCCAACATGTAT
AGCCGTTCAACCTCTCGACCTTTCGTGCTTCATTGGCGGGGCTTGCACAA
GGCAGCTCCTTCTACTACCTATCCTCACGTCGATCTCGTCTCGCGCCAAT
TCCTCCATGTGACACGAGGTGTCATTCTGTCCACGCCACGGTCGTAGCCG
CTGCTGGTTGTTTTCCGCTCGCCTATGCGCCTGCACGTACCGGCGAATTG
CTGCACTGTTGCAACTATCCGCTCCCTCGGCAGATATCTCTTTTACGACA
CTTGGAACTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10905:576..1086+

>mRNA_Ecto-sp13_S_contig10905.807.1 ID=mRNA_Ecto-sp13_S_contig10905.807.1|Name=mRNA_Ecto-sp13_S_contig10905.807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10905:576..1086+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCTCGAGTTCTGCGACGGTGTACCAGCCCGTCACCGGCGGCACAGGAA
GAACAAGCACATCAAAGAGGGGAATCAGGCGAACATGGCTACTTCAGCCC
GGTGGGCGTCGAGCAAACGATCTGACACGCTTGACTATGAGCAAGGGAGG
GGCCTGAAGCGAGTGGCGTCTGCAATCACCAGATATCTCTTTTACGACAC
TTGGAACTTG
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