mRNA_Ecto-sp13_S_contig109.801.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig109.801.1
Unique NamemRNA_Ecto-sp13_S_contig109.801.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig109.801.1 vs. uniprot
Match: D8LU69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU69_ECTSI)

HSP 1 Score: 511 bits (1316), Expect = 9.900e-178
Identity = 294/306 (96.08%), Postives = 299/306 (97.71%), Query Frame = 1 
Query:  130 AAERRPTAAEAAELLRRRSSVDEVIGLLSAPAADGSFEDEGMGSQDCDPAQFDSWRNSLTKVLGHLGFDFENEEGTPCEEEELGPDGKRSPTD--KHARHNSRGSSQFLSWGGTSAMSFEERPEEFHESLRQIPMRWRSSLSSIMTSMASNGGFDEHGGAYANGAGXXXXXXXXXXXXXXXXXXXXRA-NMGMDVSGDGGNVTGQTGERKRLEQQASLEMLQSVMRETLESMSGADGHEASTEDGEQEAKAAATAALAMGSMCRAKSSDENTSAANGGHGRPVSAGSTGSGRGMGGPSGHNSYVAP 1038
            AAERRPTAAEAAELLRRRSSVDEVIGLLSAPAADGSFEDEGMGSQDCDPAQFDSWRNSLTKVLGHLGFDFENEEG PCEEEELGPDGKRSPTD  KH+RHNSRGSSQFLSWGGTSAMSFEERPEEFHESLRQIPMRWRSSLSSIMTSMASNGGFDEHGGAYANGAGXXXXXXXXXXXXXXXXXXXX   NMGMDVSGDGGNVTGQTGERKRLEQQASLEMLQSVMRETLESMSGADGHEASTEDGEQEAKAAATAALAMGSMCRAKS++EN+SA NGGHGRP+SAGSTGSGRGMGGPSGHNSYVAP
Sbjct:   14 AAERRPTAAEAAELLRRRSSVDEVIGLLSAPAADGSFEDEGMGSQDCDPAQFDSWRNSLTKVLGHLGFDFENEEGAPCEEEELGPDGKRSPTDTDKHSRHNSRGSSQFLSWGGTSAMSFEERPEEFHESLRQIPMRWRSSLSSIMTSMASNGGFDEHGGAYANGAGXXXXXXXXXXXXXXXXXXXXXXXNMGMDVSGDGGNVTGQTGERKRLEQQASLEMLQSVMRETLESMSGADGHEASTEDGEQEAKAAATAALAMGSMCRAKSNEENSSATNGGHGRPLSAGSTGSGRGMGGPSGHNSYVAP 319
[Close]
BLAST of mRNA_Ecto-sp13_S_contig109.801.1 vs. uniprot
Match: A0A6H5JLW3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW3_9PHAE)

HSP 1 Score: 529 bits (1362), Expect = 4.200e-174
Identity = 322/343 (93.88%), Postives = 327/343 (95.34%), Query Frame = 1 
Query:   13 NYTQPLRDSGGSDWGGGHKRQGSXXXXXXXXXXXXXXXXAAERRPTAAEAAELLRRRSSVDEVIGLLSAPAADGSFEDEGMGSQDCDPAQFDSWRNSLTKVLGHLGFDFENEEGTPCEEEELGPDGKRSPTDKHARHNSRGSSQFLSWGGTSAMSFEERPEEFHESLRQIPMRWRSSLSSIMTSMASNGGFDEHGGAYANGAGXXXXXXXXXXXXXXXXXXXXRANMGMDVSGDGGNVTGQTGERK-RLEQQASLEMLQSVMRETLESMSGADGHEASTEDGEQEAKAAATAALAMGSMCRAKSSDENTSAANGGHGRPVSAGSTGSGRGMGGPSGHNSYVAP 1038
            NYTQPLRDSGGSDWGGGHKRQGSXXXXXXXXXXXXXXXXAAERRPT AEA ELLRRRSSVDEVIGLLSAPAADGSFEDEGMGSQDCDPAQFDSWRNSLTKVLGHLGFDFENEEGTPCEEEELGPDGK S      RHNSRGSSQFLSWGGTSAMSFEERPEEFHESLRQIPMRWRSSLSSIMTSMASNGGFDEHGGAYANGAG XXXXXXXXXXXXXXXXXXX  NMGMDV+GDGGNVTGQTGERK RLEQQASLEMLQSVMRETLESMSGADGHEASTEDGEQEAKAAATAALAMGSM RAKS+D+N SAANGG+GRP+S GSTGSGRGMGGPSGHNSYVAP
Sbjct:  819 NYTQPLRDSGGSDWGGGHKRQGSXXXXXXXXXXXXXXXXAAERRPTTAEAVELLRRRSSVDEVIGLLSAPAADGSFEDEGMGSQDCDPAQFDSWRNSLTKVLGHLGFDFENEEGTPCEEEELGPDGKPS------RHNSRGSSQFLSWGGTSAMSFEERPEEFHESLRQIPMRWRSSLSSIMTSMASNGGFDEHGGAYANGAGNXXXXXXXXXXXXXXXXXXXXXNMGMDVTGDGGNVTGQTGERKQRLEQQASLEMLQSVMRETLESMSGADGHEASTEDGEQEAKAAATAALAMGSMYRAKSNDDNNSAANGGNGRPLSVGSTGSGRGMGGPSGHNSYVAP 1155
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig109.801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU69_ECTSI9.900e-17896.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLW3_9PHAE4.200e-17493.88HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig109contigEcto-sp13_S_contig109:7116..11509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1287
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_000450.1
Cds size1287
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462561.7896092-CDS-Ecto-sp13_S_contig109:7115..72971681462561.7896092-CDS-Ecto-sp13_S_contig109:7115..7297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig109 7116..7297 +
1681462561.800479-CDS-Ecto-sp13_S_contig109:8244..83741681462561.800479-CDS-Ecto-sp13_S_contig109:8244..8374Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig109 8245..8374 +
1681462561.810697-CDS-Ecto-sp13_S_contig109:9215..93861681462561.810697-CDS-Ecto-sp13_S_contig109:9215..9386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig109 9216..9386 +
1681462561.8426182-CDS-Ecto-sp13_S_contig109:9995..102621681462561.8426182-CDS-Ecto-sp13_S_contig109:9995..10262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig109 9996..10262 +
1681462561.8545506-CDS-Ecto-sp13_S_contig109:10972..115091681462561.8545506-CDS-Ecto-sp13_S_contig109:10972..11509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig109 10973..11509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig109.801.1prot_Ecto-sp13_S_contig109.801.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig109 7116..11509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig109.801.1

>prot_Ecto-sp13_S_contig109.801.1 ID=prot_Ecto-sp13_S_contig109.801.1|Name=mRNA_Ecto-sp13_S_contig109.801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=429bp
RPKPNYTQPLRDSGGSDWGGGHKRQGSGMGMGMGMGMGMGMGMAAERRPT
AAEAAELLRRRSSVDEVIGLLSAPAADGSFEDEGMGSQDCDPAQFDSWRN
SLTKVLGHLGFDFENEEGTPCEEEELGPDGKRSPTDKHARHNSRGSSQFL
SWGGTSAMSFEERPEEFHESLRQIPMRWRSSLSSIMTSMASNGGFDEHGG
AYANGAGNGGGGGGGGGGGGGGGSGGGRANMGMDVSGDGGNVTGQTGERK
RLEQQASLEMLQSVMRETLESMSGADGHEASTEDGEQEAKAAATAALAMG
SMCRAKSSDENTSAANGGHGRPVSAGSTGSGRGMGGPSGHNSYVAPPPPV
SSAGMHGPPGGASASSSSRVVVGVGHHERSSSQAAADAYFMRQQAAAAAG
GGQYALGGGGGGGGGGGLGIHHDHQTTF*
back to top

mRNA from alignment at Ecto-sp13_S_contig109:7116..11509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig109.801.1 ID=mRNA_Ecto-sp13_S_contig109.801.1|Name=mRNA_Ecto-sp13_S_contig109.801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4394bp|location=Sequence derived from alignment at Ecto-sp13_S_contig109:7116..11509+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCCAAGCCGAACTACACGCAGCCCCTTCGGGATTCCGGTGGGTCTGA
CTGGGGCGGGGGACACAAGCGTCAAGGGTCAGGGATGGGCATGGGCATGG
GTATGGGCATGGGCATGGGCATGGGCATGGCTGCAGAGCGAAGGCCGACA
GCCGCGGAGGCAGCTGAACTCCTCCGCCGAAGGTGCGCCGCAGAATGTAT
ACTAACCCCCCCCCCCCCCCCACCCCGCCTCCGATGGTGTGTGCCTAGCT
TCCAACAGCAGTTGCATCAGTAGGCATTGCTGTCTGTGTCTGTCTGTCTG
TCTGTCTATCTCTGTGGACTCATCACTGCTGGCCTAATGGCTCTTGAAGC
ACCGAAGATGACATCGGTAAGGCACAAATCGTTTCATGTCGCAGTGTTGT
TTGCCTTGGATGCATGTATGCAATCGAACCATGATGTTGGTTTCTCTGGC
TGGGGGACTGGGTCTGTTGTTTTTTGTTGGTTTCTGTATGTGACAACGGA
AGGCGTTCGCGTCAGTTGGACCAGTAGTGTGGATGTGTTTCGTCCGTGAC
ACTAACGTGACGTAGAAGGTGGTGGTGTGGTGTTGCCTGGATGTGGTAGG
TACCCTCTCGAGGGAGGGAAGGGGCTGCTTTACGAACCTTTCTCGCGTTA
AAACTCAAGGCATATGTACACGGCAGAGATACTTTTTTTGGTGAATTTCG
ATAGTCGATGGGACGAGTGAATCCCTTAGGCTGAAGACGAAGGCGGGGCT
CTACGGTAAGGTCAAGGTCAACTATCGAGGGACGGGCGTCAACGAGGGAG
CGGGTTGGCGATACTTGTACTTATTCTATGGAATATCGGGCATCACGTTG
TTTTGTTTGCGTCGTTTTGTGGGGTGTGGCGATCGAAATGAGTGCGCCCG
ATGTGGGCATGCGCCAAAAGCGGGCACTGAACGGGTTGTAGAGACAGAGA
CAGAGAAACAGAGACACAGAGACGAGGGAGTAATACCGAGCAATGGTTTT
CCCCACGTCTGCGCCTGGTGCATCCTAATTGACAAGTTCTTGGGCCCATG
ATGACGGCGAGTGCCGGCGTTTGATGTTCAACCCGATTCGCATGCGTGCG
TTGCTCGTAACACACTCATGTATGCACAGGTCTTCCGTGGACGAGGTGAT
CGGGCTCCTGTCGGCACCTGCAGCGGACGGCAGCTTCGAGGATGAAGGCA
TGGGGTCGCAAGACTGTGACCCGGCGCAATTCGACAGCTGGCGGAACTCT
CTCACCAAGGTGCGTCCTCGTCCTCGTTGCTGTAGGAATGTTGTAATGAA
GCCAATGGACTCTGCTGAAGCAATAGAAAATAGGGTTTGCAGGTCGGCGG
GCGTTCTGTTCCGACTGCTTAGGCTGGTCACTATAACAGGTATCGCCGGG
GTGATGTGTGGAAGCCATAGAATCCCAGGCCGCCCCACGCAGGCGTAGTG
TACACGCGAATTTGCCGCGATCTATGACCTATTAAGGGAGGTTGGTAGTT
TGCATGACGTAATACATACCACACTCTCTTAGCCTGGACCACCCGATGTT
TATTTGCACCCCGATTGGTCTTCAAGGCAGCCAGGGACGGTGCCAAACAA
AAAAGAGGACGGTGCCAAAAATGGCGACGTTGGGGCCGTCTCATTAAGAG
CATGTTTCCGAAAACGGACCATTTGGTGTTGGTGTTCCATTTGTCGTGGA
GTAATGGAGGTTTGTTGATTGGTGTAGAGGGGTGGTACGTTGCGTATGCA
ACCTACTGGCAGGCCATTTCGCAGCCTCTCGGCGGGAAGTCTCGAGCCAT
AGGCGAGAAACTGTTGACCATCGTGCACTGAGATCAGCGGCAGTCCTTGA
GACTGACAGGGGCAGCAGCCAGGGGCAACAACCGAAAGATCTTACAGTGT
AGATGTCGGTTGTGATGGGTGTGGGAGTGAGAGGAAGCGGCTTTGGCGAT
TTTTTTCACTCGGCACAGCAAGGACAAGAGAGACGACAAAAGCCAGGAAC
AACAAGCATGTATACATAAGAACGCCATCTCTTGTACCCCTAGACGGGAA
GAGGCTTAGTGTACCTTCTTCGGTGATGCTTGCGTTACGTCCACTATCAG
GTTCTCGGGCACCTGGGCTTCGATTTCGAAAACGAAGAGGGGACTCCGTG
CGAAGAAGAGGAGCTCGGCCCGGACGGCAAGCGTTCCCCCACGGACAAGC
ATGCTCGTCACAATAGCCGTGGGTCGTCGCAGTTTCTCAGCTGGGGGGGC
ACGTCTGCGATGTCGTTCGAGGTGCGGTGGGTTGTGCCGTACTGTGTCTG
TCAATACAATCATCGTACAGCAGTACTGCCGTGTGGCTGGTCTTGCCCTG
TCTGGCTTTTCTTGTCCCTTTCTTTTAGGCGTCTCGCGGTCTTGGCTTTT
GTGATCTCAATATCAATATTTCGTTGGTTGTTAATAGTTGTCCACGTCGG
TCTTGACCCCGTTCGGGACAATTCTGGACGCACCGGACAGGGTGAAGGAC
ACACAGGAGGAGAGGCACCGTTGTTTCTCCGTGTGTTTCGATTTTCAATT
TTTCATGTCACGATATGCCTTCTGACGTCTCCTCATTCCTCGCGTTGTGG
AATCGATCAACCGCTGCCTTGCTCCGATCCTGTTGGCTCTTCCCATTCTG
GGCAAAGAGTATTTGCCTAGTTTTTCAATTTTCCATGGACAGTTTGTTTT
TCTTCTTGTTTGTGCGCATTCGCTGTGTTGTGCATGACCCGCTTGTTGTG
TTCGCTAGTGTCTCAACGGCAGCAAGGCTGTGTTGTATTGCGCGAACGGC
AGTATAGCATGCAAAAGCAGTGGTAAATAACCAAGCAAGCCATCCCGGAT
GGTGCTGAAACGGTTCGGTTGCTGCTTCAGGAGCGACCGGAGGAATTCCA
CGAGAGCCTGCGGCAGATCCCCATGCGCTGGCGGTCTTCGCTGTCGAGCA
TCATGACATCGATGGCTTCCAACGGTGGCTTCGACGAGCACGGCGGGGCT
TACGCCAACGGTGCTGGTAATGGCGGCGGCGGCGGCGGCGGCGGAGGCGG
TGGTGGAGGCGGCGGCAGCGGCGGCGGGAGGGCAAACATGGGCATGGATG
TCTCGGGGGATGGCGGCAACGTCACCGGGCAAACGGGCGAGCGGAAGGTG
GGTCAATCAGGGCTGTTGTGTGTCTCTTTTGTGTGTTTTTGCCGCATCAT
AGCTGCTTTCGTTAGCTGCTGCTCAACCGTGTGTTTCTTCACGTAGTTGT
TGATGCGGTATTGGTCCACCTGTCATGTCATATCAGGCTGGCTGCTGTAG
GGCGAAGGGATTTGGCCGCTCTTGTACCGGGCACCCACCCGGAACTATTT
TCGGTATGGGACAAGTTTCATTGAATATGGAATATTAATATTCCATCATC
TGTGTCCGGGCCTTTTGAGAGCAAGCGGCCTTGTTTGTCCAGGGACAACG
GCTGTCATAATGATGATTTGCCATCGCAAACAGCCCTGGCCGGGATTTCC
ATTGCGCGAAAGGAAAACCGACGGTAAATGAGACGCTTGCTGTATCATGG
TGTACCCGAACCTCTCCCTCTTTCCACCCTCGTATCATAGCTCCCATCCA
TCCCATTCCCTAGATCGCACGTGGTATGTTCCTTCTGTTCCTGGTGAAGC
TGTTTTGCCTTGTGTTGTCTTGCCATTTCATTCAGCCGCGAATGATATCG
TGATTGTTTGTTGCTACAGTCAGTGTTCTTCCTGCCATCTCAACCAGCCG
CGAAGGACGTTATGATCGTTTGTTGCTACAGTCAGTGTTCTACTTGTACG
GACCCTTAACCCAACCCCACGAATCCGCCTTCGAAAACCCTTCGGCGCCA
CCAGCAGCGGCTTGAGCAGCAAGCCTCGCTGGAAATGCTCCAGTCGGTGA
TGCGCGAGACCCTCGAGAGCATGAGCGGCGCCGACGGGCACGAGGCTAGC
ACCGAGGACGGAGAGCAAGAGGCCAAGGCCGCTGCGACGGCCGCGCTCGC
CATGGGCTCCATGTGCCGCGCCAAGTCCAGCGACGAGAACACCTCGGCCG
CCAACGGCGGCCACGGGAGACCCGTCAGCGCCGGGAGCACCGGCAGCGGG
CGGGGGATGGGGGGGCCATCCGGGCACAACTCCTACGTTGCGCCCCCCCC
CCCTGTGTCCTCGGCGGGAATGCACGGGCCCCCTGGGGGGGCTTCGGCTA
GCTCGTCCTCGAGGGTCGTTGTCGGGGTGGGGCATCACGAGAGGAGCTCC
AGCCAGGCAGCGGCGGACGCTTACTTCATGCGGCAGCAGGCGGCGGCCGC
GGCGGGTGGGGGGCAGTACGCCCTCGGCGGCGGTGGCGGTGGCGGCGGCG
GCGGCGGCTTAGGGATCCACCACGACCACCAGACGACCTTTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig109:7116..11509+

>mRNA_Ecto-sp13_S_contig109.801.1 ID=mRNA_Ecto-sp13_S_contig109.801.1|Name=mRNA_Ecto-sp13_S_contig109.801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1287bp|location=Sequence derived from alignment at Ecto-sp13_S_contig109:7116..11509+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCCAAGCCGAACTACACGCAGCCCCTTCGGGATTCCGGTGGGTCTGA
CTGGGGCGGGGGACACAAGCGTCAAGGGTCAGGGATGGGCATGGGCATGG
GTATGGGCATGGGCATGGGCATGGGCATGGCTGCAGAGCGAAGGCCGACA
GCCGCGGAGGCAGCTGAACTCCTCCGCCGAAGGTCTTCCGTGGACGAGGT
GATCGGGCTCCTGTCGGCACCTGCAGCGGACGGCAGCTTCGAGGATGAAG
GCATGGGGTCGCAAGACTGTGACCCGGCGCAATTCGACAGCTGGCGGAAC
TCTCTCACCAAGGTTCTCGGGCACCTGGGCTTCGATTTCGAAAACGAAGA
GGGGACTCCGTGCGAAGAAGAGGAGCTCGGCCCGGACGGCAAGCGTTCCC
CCACGGACAAGCATGCTCGTCACAATAGCCGTGGGTCGTCGCAGTTTCTC
AGCTGGGGGGGCACGTCTGCGATGTCGTTCGAGGAGCGACCGGAGGAATT
CCACGAGAGCCTGCGGCAGATCCCCATGCGCTGGCGGTCTTCGCTGTCGA
GCATCATGACATCGATGGCTTCCAACGGTGGCTTCGACGAGCACGGCGGG
GCTTACGCCAACGGTGCTGGTAATGGCGGCGGCGGCGGCGGCGGCGGAGG
CGGTGGTGGAGGCGGCGGCAGCGGCGGCGGGAGGGCAAACATGGGCATGG
ATGTCTCGGGGGATGGCGGCAACGTCACCGGGCAAACGGGCGAGCGGAAG
CGGCTTGAGCAGCAAGCCTCGCTGGAAATGCTCCAGTCGGTGATGCGCGA
GACCCTCGAGAGCATGAGCGGCGCCGACGGGCACGAGGCTAGCACCGAGG
ACGGAGAGCAAGAGGCCAAGGCCGCTGCGACGGCCGCGCTCGCCATGGGC
TCCATGTGCCGCGCCAAGTCCAGCGACGAGAACACCTCGGCCGCCAACGG
CGGCCACGGGAGACCCGTCAGCGCCGGGAGCACCGGCAGCGGGCGGGGGA
TGGGGGGGCCATCCGGGCACAACTCCTACGTTGCGCCCCCCCCCCCTGTG
TCCTCGGCGGGAATGCACGGGCCCCCTGGGGGGGCTTCGGCTAGCTCGTC
CTCGAGGGTCGTTGTCGGGGTGGGGCATCACGAGAGGAGCTCCAGCCAGG
CAGCGGCGGACGCTTACTTCATGCGGCAGCAGGCGGCGGCCGCGGCGGGT
GGGGGGCAGTACGCCCTCGGCGGCGGTGGCGGTGGCGGCGGCGGCGGCGG
CTTAGGGATCCACCACGACCACCAGACGACCTTTTGA
back to top