mRNA_Ecto-sp13_S_contig109.800.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig109.800.1
Unique NamemRNA_Ecto-sp13_S_contig109.800.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig109.800.1 vs. uniprot
Match: A0A6H5JLW3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW3_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.610e-28
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 LGLTAHAMSRMEKVKGSQRANGLVNGMPGVQALGENLSQLDLSEHSRNELYRQQRAGG 174
            LGLTAHAMSRMEKVKGSQRANG+VNGMPGVQALGENLSQLDLSEHSRNELYRQQRAGG
Sbjct:  712 LGLTAHAMSRMEKVKGSQRANGMVNGMPGVQALGENLSQLDLSEHSRNELYRQQRAGG 769
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig109.800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JLW3_9PHAE5.610e-2898.28HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig109contigEcto-sp13_S_contig109:6207..6962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size188
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462561.648818-UTR-Ecto-sp13_S_contig109:6206..62271681462561.648818-UTR-Ecto-sp13_S_contig109:6206..6227Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig109 6207..6227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462561.657613-CDS-Ecto-sp13_S_contig109:6227..62451681462561.657613-CDS-Ecto-sp13_S_contig109:6227..6245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig109 6228..6245 +
1681462561.665762-CDS-Ecto-sp13_S_contig109:6815..69621681462561.665762-CDS-Ecto-sp13_S_contig109:6815..6962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig109 6816..6962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig109.800.1prot_Ecto-sp13_S_contig109.800.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig109 6228..6962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig109.800.1

>prot_Ecto-sp13_S_contig109.800.1 ID=prot_Ecto-sp13_S_contig109.800.1|Name=mRNA_Ecto-sp13_S_contig109.800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MSRMEKVKGSQRANGLVNGMPGVQALGENLSQLDLSEHSRNELYRQQRAG
GGGGG
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mRNA from alignment at Ecto-sp13_S_contig109:6207..6962+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig109.800.1 ID=mRNA_Ecto-sp13_S_contig109.800.1|Name=mRNA_Ecto-sp13_S_contig109.800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig109:6207..6962+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGGGTTGACCGCGCACGCCATGAGCCGAATGGAAAAGGTGTGGATTGC
TGTACGACATGTGCATGTGTTTGGTGGCCGACTCCGTAGAGATTGTTGTG
CTTCCGCGTGGGGTTAGGATTAATCGTTGGTATTGGTTTTCTCGTTTCAG
CAGATGAGACGAGGGAAATTTACAGGCGTGGCACGGCTGTGGATTTTTGG
TGGTTAGACCGCTTCCACGGCGAGAAACCGATCGATGGATCGGTGGATGG
ATGGATGGAACGGTAGCTTTCGTTGGAGGAACGTACCGGATCATGGTAGA
TGGTAGATGGTAGATGGTGGCCACAGAGACAAGAAGGTGGAACGAGGTAT
TATATACGACTTAACATGTGATTTCGCGAGAATATTCCATTGGTATATCA
TGTACGTGTAGGGCTGAAGTACCGGGCAATTGAACACTGGTATATTTTGT
ATGCTTAACGCCGACGGTTGGTGGCTGGTGTCTCTCTCTTGCAGGCATCG
GCACCGCGCTTCGTCGCGGCAGGGATACTACGCTAGGTGATCCAACGACG
TTCTAATCTATGTAGCACCAAACTGCTACCCCCGCCCCCTTGCCATTTGA
ACCTTCAAGGTGAAAGGAAGCCAACGCGCGAATGGCCTGGTGAACGGCAT
GCCGGGCGTGCAAGCGCTGGGCGAGAACCTGTCCCAGCTCGACCTTAGCG
AACACTCCCGCAACGAGCTTTACAGACAGCAGAGGGCAGGAGGTGGCGGC
GGTGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig109:6207..6962+

>mRNA_Ecto-sp13_S_contig109.800.1 ID=mRNA_Ecto-sp13_S_contig109.800.1|Name=mRNA_Ecto-sp13_S_contig109.800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig109:6207..6962+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCGAATGGAAAAGGTGAAAGGAAGCCAACGCGCGAATGGCCTGGT
GAACGGCATGCCGGGCGTGCAAGCGCTGGGCGAGAACCTGTCCCAGCTCG
ACCTTAGCGAACACTCCCGCAACGAGCTTTACAGACAGCAGAGGGCAGGA
GGTGGCGGCGGTGGC
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