mRNA_Ecto-sp13_S_contig10898.798.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10898.798.1
Unique NamemRNA_Ecto-sp13_S_contig10898.798.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10898.798.1 vs. uniprot
Match: D8LH50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH50_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 8.730e-56
Identity = 94/135 (69.63%), Postives = 106/135 (78.52%), Query Frame = 1 
Query:    1 IALVQIALVRISHGGSR-NGPQ*DSPFYLRHIYTRNHPKSRFLVVFGMGSLGVAFEATILVNFVDALELTSECGIVGTGQVIPISRLPDAQLIVRYASTISKCLRRMWDSLRLGFCISRHQRQENSGMHPYSSIN 402
            +ALV+I L+RISH  SR NGPQ + PFYLRHIYTRNHPKSR LVVFG+GSL VA E T +VN+ D   + SECG         ++RLP AQLIVRYASTISKCLRRMWDSLRL FCISRHQR+EN GMHPY +IN
Sbjct:    1 MALVEIFLLRISHPESRGNGPQQEPPFYLRHIYTRNHPKSRVLVVFGIGSLVVASEVTTVVNYADGPGVMSECG-----DRTSLTRLPHAQLIVRYASTISKCLRRMWDSLRLSFCISRHQRRENLGMHPYLAIN 130
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BLAST of mRNA_Ecto-sp13_S_contig10898.798.1 vs. uniprot
Match: A0A6H5K3M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.190e-24
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    1 IALVQIALVRISHGGSRN-GPQ*DSPFYLRHIYTRNHPKSRFLVVFGMGSLGVAFEATILVNFVDALELTSECGIVG----TGQVIP 246
            IALV+I+L+RISH  SR  GP  + PF+LR+IY RNHPKSRF V+FG+GSL VAF+ T LVN+VDA  LTSECGIV     TGQV+P
Sbjct:  117 IALVEISLLRISHPESRGTGPHQEPPFHLRNIYNRNHPKSRFWVLFGIGSLIVAFDVTTLVNYVDASGLTSECGIVRGSAKTGQVLP 203
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BLAST of mRNA_Ecto-sp13_S_contig10898.798.1 vs. uniprot
Match: D7FHS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS0_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 6.040e-19
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 IALVQIALVRISHGGSRN-GPQ*DSPFYLRHIYTRNHPKSRFLVVFGMGSLGVAFEATILVNFVDALELTS 210
            +ALV+I+L+RISH  SR  GP  + PFYLRHIYTRNHPKSRF V+ G+GSL V F+ T LVN+VDA  L+S
Sbjct:  180 VALVEISLLRISHPESRGTGPHQEPPFYLRHIYTRNHPKSRFWVLLGIGSLIVVFDVTTLVNYVDASGLSS 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10898.798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LH50_ECTSI8.730e-5669.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3M8_9PHAE1.190e-2465.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHS0_ECTSI6.040e-1964.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10898contigEcto-sp13_S_contig10898:2688..3103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size405
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000550.1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462561.5821886-CDS-Ecto-sp13_S_contig10898:2687..28641681462561.5821886-CDS-Ecto-sp13_S_contig10898:2687..2864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10898 2688..2864 -
1681462561.599859-CDS-Ecto-sp13_S_contig10898:2875..29651681462561.599859-CDS-Ecto-sp13_S_contig10898:2875..2965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10898 2876..2965 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462561.6158803-UTR-Ecto-sp13_S_contig10898:2965..31031681462561.6158803-UTR-Ecto-sp13_S_contig10898:2965..3103Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10898 2966..3103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10898.798.1prot_Ecto-sp13_S_contig10898.798.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10898 2688..2965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10898.798.1

>prot_Ecto-sp13_S_contig10898.798.1 ID=prot_Ecto-sp13_S_contig10898.798.1|Name=mRNA_Ecto-sp13_S_contig10898.798.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MGSLGVAFEATILVNFVDALELTSECGIVGTGQVIPISRLPDAQLIVRYA
STISKCLRRMWDSLRLGFCISRHQRQENSGMHPYSSIN*
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mRNA from alignment at Ecto-sp13_S_contig10898:2688..3103-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10898.798.1 ID=mRNA_Ecto-sp13_S_contig10898.798.1|Name=mRNA_Ecto-sp13_S_contig10898.798.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=416bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10898:2688..3103- (Ectocarpus species13 EcNAP12_S_4_19m)
ATAGCTTTGGTGCAGATAGCCCTTGTTCGTATATCCCATGGGGGGTCGAG
AAACGGGCCTCAATAAGATTCACCTTTCTATCTTCGACACATCTACACTC
GGAACCATCCGAAGAGCCGGTTTTTGGTGGTGTTCGGGATGGGCTCCCTT
GGCGTGGCCTTCGAAGCGACCATTCTGGTAAACTTCGTTGATGCTTTGGA
GCTTACAAGTGAGTGCGGAATTGTTGGGGTAGTGTCAAGACCGGACAAGT
CATACCCATCAGCCGACTGCCGGACGCACAGCTGATAGTTCGCTATGCAT
CAACCATCTCTAAATGTCTACGACGTATGTGGGATTCTCTTAGATTGGGT
TTCTGCATCTCTCGGCACCAACGGCAGGAGAACTCCGGTATGCATCCCTA
CTCATCGATCAACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10898:2688..3103-

>mRNA_Ecto-sp13_S_contig10898.798.1 ID=mRNA_Ecto-sp13_S_contig10898.798.1|Name=mRNA_Ecto-sp13_S_contig10898.798.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10898:2688..3103- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTCCCTTGGCGTGGCCTTCGAAGCGACCATTCTGGTAAACTTCGT
TGATGCTTTGGAGCTTACAAGTGAGTGCGGAATTGTTGGGACCGGACAAG
TCATACCCATCAGCCGACTGCCGGACGCACAGCTGATAGTTCGCTATGCA
TCAACCATCTCTAAATGTCTACGACGTATGTGGGATTCTCTTAGATTGGG
TTTCTGCATCTCTCGGCACCAACGGCAGGAGAACTCCGGTATGCATCCCT
ACTCATCGATCAACTAA
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