mRNA_Ecto-sp13_S_contig1089.796.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1089.796.1
Unique NamemRNA_Ecto-sp13_S_contig1089.796.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1089.796.1 vs. uniprot
Match: D8LLN6_ECTSI (Oxidoreductase, short chain dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLN6_ECTSI)

HSP 1 Score: 595 bits (1535), Expect = 1.430e-206
Identity = 309/342 (90.35%), Postives = 323/342 (94.44%), Query Frame = 3
Query:  234 MTRTALRSAVVVFSAFAQHSTSFVLRGSPGAAPGAFTQHPRGQHPSNAPMALGLTDRIGSTAAVGIRATSMASSSTDETAPVSPLPGNCLVIGGNRGLGLEVVRHLKERESTILATTRTTNADLEAVGVSVLEGIDVADKNSGTKLVEAVQKELGEGGTLDYVICNVGILIPDTFEDPKFDAAVKMYEVCVLGPLRVLQALVVSGLLREGSSIGMVTSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKPRGVAIVNIHPGFMKTSMTEMYADKYDELGAIGPEEAAPGIVKAVEDLTLENTGKFIAPKGSKSLGLGVYALEDPESYGPFSELPW 1259
            M RTALRSAVVV  AFAQ STSFVL  SP AAPGAFT +PRGQHPS+ PMA GLT+RIGSTA VG RA  MASSST+ET PVSPLPGNCLVIGGNRGLGLEVVRHLK+REST+LATTRTTNADLEAVGVSVLEGIDV+DK+SGTKLVEAVQKELGEGGTLDYVICN GILIPDTFEDP+FDAAVKMYEVCVLGPLRVLQALVVSGLLR+GS+IGM+TSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVK RGVAIVNIHPGFMKTSMTE+YADKYDELGAIGPEEAAPGIVKAVEDLTLE TGKFIAP+GSKSLGLGVYALEDPESYGPF ELPW
Sbjct:    1 MARTALRSAVVVVLAFAQLSTSFVLWSSPAAAPGAFTPYPRGQHPSSTPMAPGLTERIGSTAVVGARA--MASSSTNETPPVSPLPGNCLVIGGNRGLGLEVVRHLKKRESTVLATTRTTNADLEAVGVSVLEGIDVSDKDSGTKLVEAVQKELGEGGTLDYVICNAGILIPDTFEDPEFDAAVKMYEVCVLGPLRVLQALVVSGLLRKGSNIGMITSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKTRGVAIVNIHPGFMKTSMTEIYADKYDELGAIGPEEAAPGIVKAVEDLTLETTGKFIAPQGSKSLGLGVYALEDPESYGPFCELPW 340          
BLAST of mRNA_Ecto-sp13_S_contig1089.796.1 vs. uniprot
Match: A0A1X6NYS2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYS2_PORUM)

HSP 1 Score: 244 bits (623), Expect = 1.750e-71
Identity = 131/262 (50.00%), Postives = 176/262 (67.18%), Query Frame = 3
Query:  483 PLPGNCLVIGGNRGLGLEVVRHLKERESTILATTRTT-NADLEAVGVSVLEGIDVADKNSGTKLVEAVQKELGEGGTLDY--VICNVGILIPDTFEDPKFDAAVKMYEVCVLGPLRVLQALVVSGLLREGSSIGMVTSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKPRGVAIVNIHPGFMKTSMTEMYADKYDELGAIGPEEAAPGIVKAVEDLTLENTGKFIAPKGSKSLGLGVYALEDPESYGPFSELPW 1259
            PL  + L+IG   GLGLE+ + L    + +  T R T +  LE +  S++ GIDVA  +   KLVE    EL   G ++   ++C  GIL PD+  D + D   +M +VC LGPLR++ ALV +GLL  GS +G+VTSEGGS+GLRT  EGG NYGHH SK A+NM GK+ +LD+  RG+ +V IHPGFMK+SMTE + +KYDELGA+ P  AA G+V+ ++ L  +NTG+FI P GS++LG GV+ LE+ E  GP SELPW
Sbjct:    9 PLGDHALIIGAGSGLGLELAKVLAPTGTALAVTVRNTVDPALEELDASIIRGIDVAT-DGPDKLVE----ELAALGWVNVSTLVCVAGILKPDSLGDLQPDNWRQMMDVCALGPLRIVDALVTAGLLTAGSKVGLVTSEGGSIGLRTPKEGGGNYGHHCSKAAENMAGKILSLDLAERGMPLVCIHPGFMKSSMTEPFKEKYDELGAVEPHVAAKGVVECMKQLNKDNTGRFIQPLGSENLGFGVWGLEEAEKKGPMSELPW 265          
BLAST of mRNA_Ecto-sp13_S_contig1089.796.1 vs. uniprot
Match: A0A7S1ESF3_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESF3_9RHOD)

HSP 1 Score: 205 bits (521), Expect = 5.850e-56
Identity = 113/260 (43.46%), Postives = 165/260 (63.46%), Query Frame = 3
Query:  492 GNCLVIGGNRGLGLEVVRHLKERESTILATTRTT--NADLEAVGV-SVLEGIDVADKNSGTKLVEAVQKELGEGGTLDYVICNVGILIPDTFEDPKFDAAVKMYEVCVLGPLRVLQALVVSGLLREGSSIGMVTSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKPRGVAIVNIHPGFMKTSMT-EMYADKYDELGAIGPEEAAPGIVKAVEDLTLENTGKFIAPKGSKSLGLGVYALEDPESYGPFSELPW 1259
            G  LVIGG+RGLGLE+V+ L      ++A  R    +A+LEAV   +V+ G D    N    + E +   L E   +D V+   G    +T ++   +  VKM+++C + P ++L ++  +      + IG +TSEGGS+GLRTE EGG NYGHHMSK + NM+GKL A D+KP G+++V IHPGF++T MT + Y+  +DELGA+    A P I++ V DL+LE+TG+F+A  G+  LGLG+YA+EDP    P ++LPW
Sbjct:   83 GTTLVIGGDRGLGLEMVKALTNNGCKVIAAIRKDKPSAELEAVNPHTVITGADFMSDN----VDEIICNGLTE--PVDTVMMVSGYFTTETLDEFNREEEVKMFKICAISPGQILTSMHKNKKFAPNAKIGFITSEGGSIGLRTEKEGGLNYGHHMSKASSNMLGKLLAYDLKPFGISMVMIHPGFLRTDMTADKYSHLWDELGAVTAATAVPYILQCVADLSLESTGRFVAAMGAHGLGLGIYAIEDPSKLVPGADLPW 336          
BLAST of mRNA_Ecto-sp13_S_contig1089.796.1 vs. uniprot
Match: A0A0F7SXX7_PHARH (Short chain dehydrogenase reductase family superfamily n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SXX7_PHARH)

HSP 1 Score: 192 bits (488), Expect = 6.330e-52
Identity = 105/238 (44.12%), Postives = 148/238 (62.18%), Query Frame = 3
Query:  489 PGNCLVIGGNRGLGLEVVRHLKERESTILATTRTTNAD-LEAVGVSVLEGIDVADKNSGTKLVEAVQKELGEGGTLDYVICNVGILIPDTFEDPKFDAAVKMYEVCVLGPLRVLQALVVSGLLREGSSIGMVTSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKPRGVAIVNIHPGFMKTSMTEMYADKYDELGAIGPEEAAPGIVKAVEDLTLENTGKFIAPKGSKSLG 1199
            P   L++G NRGLGL + + L +R +T+ ATTR+   +     GV V+EGIDV +  +G  LVE +     EG  LD  +   G+L  +TF++P F A + MY++C +GP+ +  AL  S        I ++TSEGGS+ LRTE EGG  +GHH SK A NM+G L + D+KP+GV +V IHPGF+ T MT    D Y + GA+ PE AAP  +  V+ +TL++TG+F AP G K +G
Sbjct:   38 PLKALIVGANRGLGLALTKELHKRGTTVYATTRSPAKEGTFPDGVHVIEGIDVGEPGAGKTLVEKL-----EGAKLDLTVIVAGLLKEETFKEPDFQAEMDMYKICAVGPVFITSALSKSSFASNAKLI-LLTSEGGSITLRTEKEGGGMFGHHGSKAAANMVGHLLSYDLKPKGVTVVMIHPGFLITDMTGGMKDHYKKGGAVKPEVAAPIFLDFVDTVTLKHTGQFWAPMGPKGIG 269          
BLAST of mRNA_Ecto-sp13_S_contig1089.796.1 vs. uniprot
Match: V2XTU7_MONRO (Short chain dehydrogenase reductase family superfamily n=3 Tax=Moniliophthora TaxID=221102 RepID=V2XTU7_MONRO)

HSP 1 Score: 190 bits (482), Expect = 1.520e-51
Identity = 100/235 (42.55%), Postives = 147/235 (62.55%), Query Frame = 3
Query:  501 LVIGGNRGLGLEVVRHLKERESTILATTRTTNADLEAVGVSVLEGIDVADKNSGTKLVEAVQKELGEGGTLDYVICNVGILIPDTFEDPKFDAAVKMYEVCVLGPLRVLQALVVSGLLREGSSIGMVTSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKPRGVAIVNIHPGFMKTSMTEM--YADKYDELGAIGPEEAAPGIVKAVEDLTLENTGKFIAPKGSKSLG 1199
            LVIG +RGLG E+ ++L  +  T+ AT R+T + L + GV  +  +D+ +++ G+K+V+ +      G  LD VI N G+   + F+ P F   V+MY+V  + P+ ++  LV + LL   S + ++TSEGGS+GLRT+ EGG NYGHH SK A NM+GKL A D+K +G+ +  IHPGFMKT MT+   +   Y+  GA+ P EAA   +  V DLT + TG F AP+G   +G
Sbjct:    5 LVIGASRGLGQELAKYLASKGHTVFATVRSTPSGLSS-GVETIPNVDLTEEDVGSKIVKGLS-----GQKLDLVIVNAGVFKKEDFDSPSFADEVEMYKVVAIAPVNIIHHLVKANLLNSPSKVILITSEGGSIGLRTQEEGGGNYGHHGSKAAANMVGKLLAHDLKDKGITVAMIHPGFMKTDMTKNVGFDQFYESGGAVEPAEAAQSTIDFVLDLTPDQTGTFWAPRGPAGVG 233          
BLAST of mRNA_Ecto-sp13_S_contig1089.796.1 vs. uniprot
Match: A0A1E3I5S4_9TREE (Cytoplasmic protein n=2 Tax=Cryptococcus depauperatus TaxID=5208 RepID=A0A1E3I5S4_9TREE)

HSP 1 Score: 187 bits (476), Expect = 1.380e-50
Identity = 107/262 (40.84%), Postives = 162/262 (61.83%), Query Frame = 3
Query:  495 NCLVIGGNRGLGLEVVRHLKER--ESTILATTR-TTNADLEAVGVSVLEGIDVADKNSGTKLVEAVQKELGEGGTLDYVICNVGILIPDTFEDPKFDAAVKMYEVCVLGPLRVLQALVVSGLLREGSSIGMVTSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKPRGVAIVNIHPGFMKTSMTEMYADK--YDELGAIGPEEAAPGIVKAVEDLTLENTGKFIAPKGSKSLGLGVYALEDP--ESYGPFSELPW 1259
            N LV+G +RGLGL +V+H   +   + + AT R + +AD+   GV+++E +D + ++ G K+V+ +Q     G  +D V+   G+L P+  E+  +   V MY VC + P+ V+QAL+++  L   + I +VTSE GS+ LRTE EGG  +GHH SK A+NM+G L + D+K RGV+I  IHPGF+KT MT+    +  YD++GA+ P+EAA    + V  L L+ TGKF AP G+K +G     L +   +  GP  E+PW
Sbjct:    5 NVLVVGASRGLGLVLVKHYSSQLTPANVFATVRGSASADVFPEGVNIIEDVDCSREDCGKKIVDGLQ-----GAAVDIVVYVAGVLKPEKLEELSWKDEVLMYTVCSIAPVFVVQALLMASSLAPDARIALVTSEAGSITLRTESEGGGAFGHHGSKAAENMVGHLLSYDLKERGVSIAMIHPGFLKTDMTKDAGMEQFYDKMGAVTPDEAAKPFAEFVNKLNLDMTGKFWAPLGAKGIGNAEEVLGEEVLDKSGPL-EIPW 260          
BLAST of mRNA_Ecto-sp13_S_contig1089.796.1 vs. uniprot
Match: A0A8H3IKQ9_9LECA (Uncharacterized protein n=1 Tax=Heterodermia speciosa TaxID=116794 RepID=A0A8H3IKQ9_9LECA)

HSP 1 Score: 186 bits (473), Expect = 3.030e-50
Identity = 96/238 (40.34%), Postives = 156/238 (65.55%), Query Frame = 3
Query:  495 NCLVIGGNRGLGLEVVR-HLKERESTILATTRTTNADLEAVGVSVLEGIDVADKNSGTKLVEAVQKELGEGGTLDYVICNVGILIPDTFEDPKFDAAVKMYEVCVLGPLRVLQALVVSGLLREGSSIGMVTSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKPRGVAIVNIHPGFMKTSMTEMYA-DKY-DELGAIGPEEAAPGIVKAVEDLTLENTGKFIAPKGSKSLG 1199
            N L++G +RGLG  + + + +++++ I AT+RT++       ++ +EGID+A +++G  +V+ ++     G TLD VI   G    +TF+ P FDA V+MY++  +GP+ ++  LV +GL+ +   I +V+SE GS+ LR E EGG NYGHH SK A NM GKL +LD+K +G+A+  +HPGFM+T MT+    DKY D  GA+ P+EAA  + + +  L + +TG++ AP+G + +G
Sbjct:    2 NILIVGASRGLGASLTKFYAQDKDNHIFATSRTSSTAESPEHITYVEGIDIASEDAGPSIVKRIKPS---GKTLDVVIITAGYFATETFDKPDFDAEVQMYKISSIGPVFIVHHLVKAGLMAKDGKIVLVSSESGSITLRHESEGGGNYGHHASKAALNMAGKLLSLDLKAKGIAVGIVHPGFMRTEMTKGVGFDKYWDAGGAVTPDEAAASLKQYISKLDMGSTGEYWAPRGPRDIG 236          
BLAST of mRNA_Ecto-sp13_S_contig1089.796.1 vs. uniprot
Match: A0A507CIT0_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CIT0_9FUNG)

HSP 1 Score: 185 bits (469), Expect = 9.740e-50
Identity = 111/254 (43.70%), Postives = 154/254 (60.63%), Query Frame = 3
Query:  504 VIGGNRGLGLEVVRHLKERESTILATTRTTNADLEAVGVSVLEGIDVADKNSGTKLVEAVQKELGEGGTLDYVICNVGILIPDTFEDPKFDAAVKMYEVCVLGPLRVLQALVVSGLLREGSSIGMVTSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKPRGVAIVNIHPGFMKTSMTEMYA-DK-YDELGAIGPEEAAPGIVKAVEDLTLENTGKFIAPKGSKSLGLGVYALEDPESYGPFSELPW 1259
            +IG + GLGL + +H   + + +  TTR    D++  GV   + +D ++K S  +L     +EL       YV+   G    ++F++  ++  +KMY+   +GPL V + LV  G LR GS +  +TSE GS+GLRTE EGG  YGHH SK AQNM GKL + D+KP+G++IV IHPGFMKT +T+    DK Y++ GAI PEEA   ++K V +LTLENTGKFIAP G K +G   + L   E      ELPW
Sbjct:    9 IIGASSGLGLALAKHFASKGTRVYGTTRD-GKDIQVEGVFTSK-LDTSEKRSIDELKIPEIQEL-------YVVA--GYFSKESFDEMSWEEELKMYKTGAMGPLFVTRHLVKQGSLRHGSKVIWITSEAGSIGLRTEKEGGGLYGHHASKTAQNMNGKLLSFDLKPKGISIVMIHPGFMKTGLTKSVGFDKHYEKGGAIDPEEAVEPLLKVVANLTLENTGKFIAPVGPKGVG-NAHVLGPVEKLPAPLELPW 250          
BLAST of mRNA_Ecto-sp13_S_contig1089.796.1 vs. uniprot
Match: A0A8H6G570_9LECA (Uncharacterized protein n=2 Tax=Parmeliaceae TaxID=78060 RepID=A0A8H6G570_9LECA)

HSP 1 Score: 184 bits (467), Expect = 1.910e-49
Identity = 104/255 (40.78%), Postives = 155/255 (60.78%), Query Frame = 3
Query:  501 LVIGGNRGLGLEVVRHLKERESTILATTRTTNADLEAVGVSVLEGIDVADKNSGTKLVEAVQKELGEGGTLDYVICNVGILIPDTFEDPKFDAAVKMYEVCVLGPLRVLQALVVSGLLREGSSIGMVTSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKPRGVAIVNIHPGFMKTSMTEMYA-DKY-DELGAIGPEEAAPGIVKAVEDLTLENTGKFIAPKGSKSLGLGVYALEDPESYGPFSELPW 1259
            +++G +RGLG E+ +      +T+ AT+R+  A   +  +  +  IDVA +++G KL   + K+     TLD VI   G    ++F  P +D  VKMY    +GP+ ++  LV +GLL +GS I +V+SE GS+ LR E EGG NYGHH SK A NM+GKL +LD+K +GVA+  +HPGFM+T MT     DK+ D+ GA+ P+EAA  ++K +E   +E TG++ AP+G + +G     L    S  P  +LPW
Sbjct:    5 IIVGASRGLGAELAKQYASN-NTVFATSRSDKAPESSKNIEYIANIDVAKEDAGQKLASHIGKK-----TLDTVIITAGYFATESFGSPSWDNQVKMYTTSSIGPVFIVHYLVKAGLLAKGSKIILVSSESGSITLRHESEGGGNYGHHASKSALNMVGKLLSLDLKEKGVAVGIVHPGFMRTEMTRGVGFDKFWDDGGAVTPDEAAKSLIKFIETFDIEKTGEYWAPRGPRDIGTAEAVLGKDLST-PL-QLPW 251          
BLAST of mRNA_Ecto-sp13_S_contig1089.796.1 vs. uniprot
Match: A0A067N344_PLEOS (Uncharacterized protein n=1 Tax=Pleurotus ostreatus PC15 TaxID=1137138 RepID=A0A067N344_PLEOS)

HSP 1 Score: 181 bits (458), Expect = 3.440e-48
Identity = 94/235 (40.00%), Postives = 144/235 (61.28%), Query Frame = 3
Query:  501 LVIGGNRGLGLEVVRHLKERESTILATTRTTNADLEAVGVSVLEGIDVADKNSGTKLVEAVQKELGEGGTLDYVICNVGILIPDTFEDPKFDAAVKMYEVCVLGPLRVLQALVVSGLLREGSSIGMVTSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKPRGVAIVNIHPGFMKTSMTEM--YADKYDELGAIGPEEAAPGIVKAVEDLTLENTGKFIAPKGSKSLG 1199
            LVIG +RGLGLE+ + L  +   + AT R+   DL + G+SV+  ID+  + +G K+   + +       LD+VI N G+   +T  +P ++A V+MY+V  + P+ +   LV + LL   +   ++T+EGGS+ LRT+ EGG N+GHH SK A NM+GKL A+D+  +GV +  IHPGFM+T MT+   Y   +D  GA+ P EAA   ++ +  L +E TG F AP+G + +G
Sbjct:    5 LVIGASRGLGLELAKLLHAQGHEVFATVRSQTHDLPS-GISVISDIDIGSEGAGAKIANDIGQR-----KLDWVIVNAGVFKAETLSEPNYEAEVEMYKVVAIAPVFIAHHLVKADLLAPSAKFILITTEGGSIALRTQEEGGGNHGHHGSKAAANMVGKLLAIDLYSKGVTVAMIHPGFMRTDMTKSVGYDKFWDAGGAVLPSEAAKSTIEFISSLNIEQTGTFWAPRGPRDIG 233          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1089.796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLN6_ECTSI1.430e-20690.35Oxidoreductase, short chain dehydrogenase n=2 Tax=... [more]
A0A1X6NYS2_PORUM1.750e-7150.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S1ESF3_9RHOD5.850e-5643.46Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A0F7SXX7_PHARH6.330e-5244.12Short chain dehydrogenase reductase family superfa... [more]
V2XTU7_MONRO1.520e-5142.55Short chain dehydrogenase reductase family superfa... [more]
A0A1E3I5S4_9TREE1.380e-5040.84Cytoplasmic protein n=2 Tax=Cryptococcus depaupera... [more]
A0A8H3IKQ9_9LECA3.030e-5040.34Uncharacterized protein n=1 Tax=Heterodermia speci... [more]
A0A507CIT0_9FUNG9.740e-5043.70Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A8H6G570_9LECA1.910e-4940.78Uncharacterized protein n=2 Tax=Parmeliaceae TaxID... [more]
A0A067N344_PLEOS3.440e-4840.00Uncharacterized protein n=1 Tax=Pleurotus ostreatu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1089contigEcto-sp13_S_contig1089:5512..11349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score599.0
Seed ortholog evalue1.4e-168
Seed eggNOG ortholog2880.D8LLN6
Model size2373
Hectar predicted targeting categorychloroplast
Exons7
EggNOG free text desc.cellular detoxification of aldehyde
EggNOG OGsCOG1028@1,KOG1611@2759
Cds size1029
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1089.796.1prot_Ecto-sp13_S_contig1089.796.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1089 5745..10238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462561.4093144-UTR-Ecto-sp13_S_contig1089:5511..57441681462561.4093144-UTR-Ecto-sp13_S_contig1089:5511..5744Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1089 5512..5744 +
1681462561.4991395-UTR-Ecto-sp13_S_contig1089:10238..113491681462561.4991395-UTR-Ecto-sp13_S_contig1089:10238..11349Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1089 10239..11349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462561.422173-CDS-Ecto-sp13_S_contig1089:5744..59441681462561.422173-CDS-Ecto-sp13_S_contig1089:5744..5944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1089 5745..5944 +
1681462561.4346948-CDS-Ecto-sp13_S_contig1089:6453..66281681462561.4346948-CDS-Ecto-sp13_S_contig1089:6453..6628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1089 6454..6628 +
1681462561.4458055-CDS-Ecto-sp13_S_contig1089:7160..72881681462561.4458055-CDS-Ecto-sp13_S_contig1089:7160..7288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1089 7161..7288 +
1681462561.4593-CDS-Ecto-sp13_S_contig1089:7845..79061681462561.4593-CDS-Ecto-sp13_S_contig1089:7845..7906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1089 7846..7906 +
1681462561.4691083-CDS-Ecto-sp13_S_contig1089:8563..87061681462561.4691083-CDS-Ecto-sp13_S_contig1089:8563..8706Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1089 8564..8706 +
1681462561.4773908-CDS-Ecto-sp13_S_contig1089:9283..94731681462561.4773908-CDS-Ecto-sp13_S_contig1089:9283..9473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1089 9284..9473 +
1681462561.486427-CDS-Ecto-sp13_S_contig1089:10106..102381681462561.486427-CDS-Ecto-sp13_S_contig1089:10106..10238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1089 10107..10238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1089.796.1

>prot_Ecto-sp13_S_contig1089.796.1 ID=prot_Ecto-sp13_S_contig1089.796.1|Name=mRNA_Ecto-sp13_S_contig1089.796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=343bp
MTRTALRSAVVVFSAFAQHSTSFVLRGSPGAAPGAFTQHPRGQHPSNAPM
ALGLTDRIGSTAAVGIRATSMASSSTDETAPVSPLPGNCLVIGGNRGLGL
EVVRHLKERESTILATTRTTNADLEAVGVSVLEGIDVADKNSGTKLVEAV
QKELGEGGTLDYVICNVGILIPDTFEDPKFDAAVKMYEVCVLGPLRVLQA
LVVSGLLREGSSIGMVTSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKL
FALDVKPRGVAIVNIHPGFMKTSMTEMYADKYDELGAIGPEEAAPGIVKA
VEDLTLENTGKFIAPKGSKSLGLGVYALEDPESYGPFSELPW*
back to top

mRNA from alignment at Ecto-sp13_S_contig1089:5512..11349+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1089.796.1 ID=mRNA_Ecto-sp13_S_contig1089.796.1|Name=mRNA_Ecto-sp13_S_contig1089.796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5838bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1089:5512..11349+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAGATCTGCTTGGAGGGGGGCCAGCGAAGGGGAATCGTTTTTCGGGGG CTGCCAACAATTGCAAAGATTCCACCGCTGCCGCATCCATCGCGCACACA CCATTTGGCCAGTGTGTTCATCGCTTCTCCCCTTTCGTCCCTCATCTCCT CGACCATCCTCTCCACTCCACCCGGGTGAGTCGACTATCGAGGCACGTAG GCTGCAGTCGTTTCAAGATCTGGGGGGTATATCATGACTCGCACGGCCCT ACGGAGTGCTGTAGTAGTCTTCTCGGCGTTCGCTCAGCATTCAACCTCTT TTGTCCTGAGGGGTAGCCCTGGTGCTGCCCCTGGCGCGTTTACTCAACAC CCTCGAGGGCAACACCCCAGCAACGCACCCATGGCTCTTGGCTTGACCGA TCGCATCGGTTCGACAGCGGCGGTGGGTATCAGGTGGGGACACAGCAGAG GCGCGTGGGAACACTGGCATGTCGTTTGGGGCCGGTCCAAAAAGAAAGAG CCAGTACATGCGTACAAGACCTTCTAGACTGCCGATTGGATGTCCGTCCA GGATATTGCTGTACACGGGGAGACCCCGCTCGATGCAGTCAAATGCGCTC CATGTTCGTGCTGCTTGCTGCCTGTGTAGTACCAGTCCGTTCAGGCCTCC GGGGCTGCTTTGAAATCATGGTATTGCGGAGTCTGACTCACTGCGCGTTT TGAGGCAACATTTATTGTGCGCAGTTGCTCCTCCGGTGTTCGTTACTGCT GTATCAGACAGGTCGCCGATGGGCGGGCGCGCATGATCGTCGTCCGAACT TCAGGCTTGGAGGCAGGCACTGCCTTAGTTGGCGTGGCTCACCATTCTAT GCGTAATAGACAGTGCGTCCCCGAGATATCCAACGCGATCTGCTGCTGCA CGCACACCTGCTCTTTCCGCTCTCCCGTGCGAATCACAGCAGAGCTACAA GTATGGCGTCCTCATCGACCGACGAGACTGCCCCCGTATCGCCGCTCCCG GGAAACTGCTTGGTCATCGGCGGGAACCGCGGGTTGGGGTTGGAGGTCGT GCGACACCTGAAGGAACGAGAGAGTACGATCCTGGCCACCACTAGGACGA CCAACGCCGATCTTGAGGTAATTAACCTCGTTGTGCGAGATGTATAGAGA GGGCGACTCTCCCTGTTCACTTTGTTTGGCCGCCTACGCTGGGCGGGAAG TGTGCAACGGATTTTTTTCTAGACCTTCCACCGATGCAGATCTACTTCTG TCCATTTTGCTGAGGAACCATCCTGTGCGTGATACACCGCTCGAACAGAC GCGAGCGATCCGCACGTTCGCCGCAAGAACCCTCAATCCAACGGCCATCC ATCCAGAGAAGTAACTCGAAGTTAATCAGCAGCGCACGTCCCGCACGACC TTCAACGTGGCCCTTTGGCGGTGCTCCATATGAGACTTCAGCGGAAGTCT TGTTCACCTGCCCAGTCAGGGACCACCTCCGGTTCAACCCACCGTCTAGA CGACTGCAACTCCTCCTCGTCCTCTCTTCTTCCCCCTCTTGCTCCTCCTA ACACACTAACAAGTCTTGTCGTTTATTGAGACGAATGATTGGGGTTCTTC TTTTTCCTGCTGTGGCGGCGTATGTCAACTGATTGGTGCCGCCGAACAGG CTGTCGGAGTTAGCGTGCTCGAGGGGATCGACGTCGCCGACAAGAACTCC GGGACCAAGCTCGTGGAGGCGGTGCAAAAGGAGCTGGGCGAGGGCGGCAC TCTCGACTACGTCATATGCAACGTTGGGTGCGTCGTGCGTGCCTTGTGTG TGTTATTACGATTAACATCGACCGCGCCAACCGGCTGACCAATGAAAGCA CACCAGTCTCAGCACGATTGAAACAGGACATGCCTCTAGAAGCCATTGTG TGTGTGTGTGTGTGTGTGTGTTTCCGTTGGCACCCTCTGGCGGTTCTGTA GCGGGTGAGAGTACTGGGCTTTAACTGTGGGCGAGGGAAAAGGACTTGCT GCGGCACTCTCTCGCAATGATATGCGTGTTTCCTTTGAGCGGTGTCCGAA ATGCGTGTTCACTGCCAGCTTTGATTTGGACCGCACGGTGGTAGGGATCT AAGGAGTTTGGGATGGATTGTCGGCACCCAAGGATATTTACTCGCCCCAG TACAACAAAGATGGAGTAAGTTCCTGATTGGGAATATGTAGTGGCTGCGA GATTTGGGGGGTTGCTGACGCCAATACGTTGGTTTGTTAGGTTGGCTCAC CTTCGATCGGCCACACCGCTGTCTGATCTGCCCCTCATGACCCCCCGTCC CACTCCGCGTCCCTCCTTCCACACCGTTGCGCAGAATTTTGATCCCTGAT ACGTTCGAAGATCCCAAATTCGATGCGGCCGTCAAGATGTATGAGGTACG CGTGGGTTACCTGTCCAACTAACTTTTGTAGTTGACTGCCTTGCACTCGT CACCTCAAACCCTAGTGGCTCGACAAATAAAACTCTGTCCCGATCGCTTC CCAATGGGATGTGGGCACGACAATTCGTGAGGATTTTGCAGAATTTTAGC TGCTGGTGGGGAACTCTAGGCGCTTCGAGTTACCCCCGGGGGCAAAAGCG ATGAAACCCTCTGCCCCGCCCCCGCGCCTCATGAGTGCACGTGCAGGGAG GGGTTGCGATAGGGTACAACGTTTGCGGCACCCAGCGATGGCTTGCCGCA AACATTGCCTCACACAAATAGACGTGCTCACTTTCCTCTCTGCTATGTCT CCTGGACTGCGCCAATGGTGCTGAAGTTTTGAGAAACTACAAGATGGTCA ACAGTTTTCGCCGACGTGGTGGTGTTACAGTAGGCGCGTCACACACGATT ACGTGAAGTCGTGCGTTTGTTGCGTCCCTGTGTGCGTGCGTCTCTCTCTC TGCTTCTCTCTCTGCATTCTGCTCTCTCTTTCTCGTTTTCAACCCCCCCC CCTGCCTGTCTCTCTCTGGCTCTACCTGTGTCTCTCTGTGTGTCTCCCCC CCCCCCCCCGTTTCTGTGTTTTTCGACTTGACTTTCGTTTGAAACCCGAC AGGTTTGCGTGCTTGGACCTCTTCGTGTTCTCCAGGCTCTGGTGGTGTCA GGACTGTTGCGGGAGGGATCGAGCATCGGAATGGTCACATCGGAAGGCGG CTCGGTCGGCCTCCGAACGGAAGTAGAAGGGGGGAACAACTACGGGTAAG GGGGCGCTTGATAATGGCCGCCGGAAGACTTGTTGTATTCATATCGGTTC AGTACACCTGCATCCATACCTGTTGAACTAGTGCGGGTGCCTTCCGTGGT CACGGACTATCCACCCAACATTTTCTTCTTTTCCTTTTCCTTTTTGGGGG GTTCCACAACGGCAAGAATGGTAGGAATTTTCTGCGGCGCCGCTACAGCA GTACTGTAGCCATTGCGGTTTGTTGTCTTGGGGTGGAGCGTTAGGTTGTC CCTCCCATGAGTATGCTCGGTTTGCTTTCAACGCGCGTAAAATGGGTTTG GGGGGCGATATGGGGTACATGAAGGAAAGGGGAAACTTTTCAAGCAACAC GCACGCCATTATTGTTCGGCAGTCTGCGTGGTCCCCGTTCTCGCCCTTGT TTTTGATTCGGTTGGCAACATTGCTGCCATTCTTTCATCGCTCTCTTCTC ATGACAATGATCCCTCCGCGTTTTTAACTTCGCGGTACTTGGCGATCTGG CTTCTATTCCGCCTACGACACCTTTGCCATACGGGAACCGGACGAACAAC AAAAACGAAACACGTATCACAGGCACCACATGAGCAAATGCGCCCAGAAC ATGATGGGCAAGCTCTTCGCTCTGGACGTGAAGCCCCGCGGCGTGGCGAT CGTGAACATCCACCCCGGCTTCATGAAGACGAGCATGACCGAGATGTACG CCGACAAGTACGACGAACTGGGTGCCATCGGGCCCGAAGAAGCAGCGCCC GGCATAGTGAAGGTATGCACATGGGGAATAGTTTTTTTTTCTTTCGATGG CATACATGGCGTCCCCTTGCAACCAAGAATTGCGGGAGACGTCCAGTTTT TACACCAAGTTCGAACACCTCGAAATCCACACACACCTTTTTGTGCTGCT TGCTGGAGGTTTCGTAGCGGGGTGGCCGTGTTTTGTTGCATTGTGGGAAG ATGGTTCCGACGAACTGCATGTGGCAGGTGTTTTGTGCCCCAATGAGGTG TGGCATCCAGCATCGGTAAGGCGCCTGTGGGTGGTTTGCGTACCCTTCTC GTCTTGTCTGGAGGAGCCACCACCACCGACAAGGAGCGGTCATCGGTCGT GATGTTCTGGCGTTAACGCGAACAAGCAACGCCCGTCGGCTACACCTCCC ATTCGATCTTCTCTTCCTCTCTTGAATTGTGTGTCCCCTTGCCTAGCCAA CTAACGTTCGTCGGTCACCACCTCCTGTTCGCTCTCTTCTCTTCCTCCCT TGAATGTCTTCTATGCCGAGCGGTCGCGACACCGCGACCTGAAGGAAAGC AAGACCCGCCAGCACAGATCTATTTCTCTCTCCCCCTCTCTTCCCCCCCC AAGTGCCACCGGTGACATCATCGCCCCGTTGATTGTTGCGCGCAGGCGGT GGAGGACCTGACTCTTGAGAACACGGGGAAATTCATAGCTCCCAAAGGAA GCAAGAGCCTAGGCCTGGGAGTCTATGCGCTCGAGGACCCCGAAAGCTAC GGGCCCTTCAGCGAGCTCCCGTGGTGATTGTTTTGCTGCCGCCGAACCGT GCAAACACGCCTCCTCCATGACGTATCCGAAACGAGACCCGTGGAGCCAG GTTGTCAATATAGCACCGCATAGGGTACATCCTACAATTTCGAAAGTGGG TGCCCGTATGTAGAAGACGCTGATAACGGGAGAGAGAACGGTTGCGCATG TTTTTGGAGGTTGTCGTACTGGCTGTGGGTTCGGCAGTGCGAGAGGGGAA GAAGTGCTGTCGGTGTTTCGAAGACAGAGGTCACTCGTCATCGACCCAGA GCAAAGGGTTGCATCTCCAGGTGCTTCGTTCTCCTTGAATACAACAGGGG AAAAAAGAGGCCGGGGGTTCGGTGCATTCTTTGGAGCGGTTGAGCGTACG ATGGTTCCTCTCTACGCTCGAGCGAACCCTTGCAAGCAGCAGTACTACTG CTTCCCACGCTTTAAAGCTCGCTTGAGTGAGTGTTGCTTCTCGAGGCTGC CGTCTTGACGGCTCTGCGGTGCCTCTACTGTTCGTGAATGTCGCAAACGC GTGTGTACCGAGCCTGTATTTTTGTCCCGTGCTCCTTGTTATTATTGTTC CTTTTTCTGCTTGCTTTTTGTTCCGTGTCGAGTTGGCGGGTTTCCGAGGA TTCCCGAAGGCGTTGTTTGTATCCATGGGGGGGGAGCGCGGGTACCGTAG CGACGAGGATTCGCGCGCAGATGATGCCCCTACCCTCAGCGTTTTCTTGT CAGCCCTGTTGGTCACCCTGTGTATCAAGGACGCATATATATTGGACCTC CGTCAACAACCAGCGGGCGTGGTACCTTCTACGTTGGACCATATCATGGT TCAAATTTGGAGATTTGAGTGGGATACATCACGTACTGTATCACCGAACC GTTTTGTCATGGCCTAGGCCGCGCAATGTCAATGTCAGTCAAAATGTTTG TACGCTACCCATTTTTTTTCATGGCTTCCGTTTCTTTTTGTGTATCGCGT TTCGCGAGTCTTCTTGAGTATGCCTGCCCCTCTCTACACTACTAGAAGAA AGGCGACATGACAACAAGTAATTCGCTCTATGCCGCTGATGTAGAGCCAA CCATGAATCTTGACAAGCGCGTGAGAAAGCTGCATCAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1089:5512..11349+

>mRNA_Ecto-sp13_S_contig1089.796.1 ID=mRNA_Ecto-sp13_S_contig1089.796.1|Name=mRNA_Ecto-sp13_S_contig1089.796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1089:5512..11349+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTCGCACGGCCCTACGGAGTGCTGTAGTAGTCTTCTCGGCGTTCGC
TCAGCATTCAACCTCTTTTGTCCTGAGGGGTAGCCCTGGTGCTGCCCCTG
GCGCGTTTACTCAACACCCTCGAGGGCAACACCCCAGCAACGCACCCATG
GCTCTTGGCTTGACCGATCGCATCGGTTCGACAGCGGCGGTGGGTATCAG
AGCTACAAGTATGGCGTCCTCATCGACCGACGAGACTGCCCCCGTATCGC
CGCTCCCGGGAAACTGCTTGGTCATCGGCGGGAACCGCGGGTTGGGGTTG
GAGGTCGTGCGACACCTGAAGGAACGAGAGAGTACGATCCTGGCCACCAC
TAGGACGACCAACGCCGATCTTGAGGCTGTCGGAGTTAGCGTGCTCGAGG
GGATCGACGTCGCCGACAAGAACTCCGGGACCAAGCTCGTGGAGGCGGTG
CAAAAGGAGCTGGGCGAGGGCGGCACTCTCGACTACGTCATATGCAACGT
TGGAATTTTGATCCCTGATACGTTCGAAGATCCCAAATTCGATGCGGCCG
TCAAGATGTATGAGGTTTGCGTGCTTGGACCTCTTCGTGTTCTCCAGGCT
CTGGTGGTGTCAGGACTGTTGCGGGAGGGATCGAGCATCGGAATGGTCAC
ATCGGAAGGCGGCTCGGTCGGCCTCCGAACGGAAGTAGAAGGGGGGAACA
ACTACGGGCACCACATGAGCAAATGCGCCCAGAACATGATGGGCAAGCTC
TTCGCTCTGGACGTGAAGCCCCGCGGCGTGGCGATCGTGAACATCCACCC
CGGCTTCATGAAGACGAGCATGACCGAGATGTACGCCGACAAGTACGACG
AACTGGGTGCCATCGGGCCCGAAGAAGCAGCGCCCGGCATAGTGAAGGCG
GTGGAGGACCTGACTCTTGAGAACACGGGGAAATTCATAGCTCCCAAAGG
AAGCAAGAGCCTAGGCCTGGGAGTCTATGCGCTCGAGGACCCCGAAAGCT
ACGGGCCCTTCAGCGAGCTCCCGTGGTGA
back to top