mRNA_Ecto-sp13_S_contig1088.787.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1088.787.1
Unique NamemRNA_Ecto-sp13_S_contig1088.787.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1088.787.1 vs. uniprot
Match: D8LLR6_ECTSI (Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR6_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 4.600e-50
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 1 
Query:  211 MWNAIGSKAQKVAQGMSSAVAEIQQDLQKERRSRGGGAGGGDFDEAEIYKQMLVGFQMDQAKLGKETQAALREKEDEAKHWKKLYLKAMGGEEDGE 498
            MWNAIGSKAQKVAQGMSSAVAEIQQDLQKERRSRGGGAGGGDFDEAEIYKQMLVGFQMDQAKLGKETQAALREKEDEAKHWKKLYLKA GGEEDGE
Sbjct:    1 MWNAIGSKAQKVAQGMSSAVAEIQQDLQKERRSRGGGAGGGDFDEAEIYKQMLVGFQMDQAKLGKETQAALREKEDEAKHWKKLYLKATGGEEDGE 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1088.787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLR6_ECTSI4.600e-5098.96Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1088contigEcto-sp13_S_contig1088:1397..4659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score184.9
Seed ortholog evalue1.8e-44
Seed eggNOG ortholog2880.D8LLR6
Model size503
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
Cds size291
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462560.9146898-CDS-Ecto-sp13_S_contig1088:1396..15461681462560.9146898-CDS-Ecto-sp13_S_contig1088:1396..1546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1088 1397..1546 -
1681462560.931829-CDS-Ecto-sp13_S_contig1088:2343..24601681462560.931829-CDS-Ecto-sp13_S_contig1088:2343..2460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1088 2344..2460 -
1681462560.942114-CDS-Ecto-sp13_S_contig1088:4425..44491681462560.942114-CDS-Ecto-sp13_S_contig1088:4425..4449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1088 4426..4449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462560.9516544-UTR-Ecto-sp13_S_contig1088:4449..46591681462560.9516544-UTR-Ecto-sp13_S_contig1088:4449..4659Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1088 4450..4659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1088.787.1prot_Ecto-sp13_S_contig1088.787.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1088 1397..4449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1088.787.1

>prot_Ecto-sp13_S_contig1088.787.1 ID=prot_Ecto-sp13_S_contig1088.787.1|Name=mRNA_Ecto-sp13_S_contig1088.787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MWNAIGSKAQKVAQGMSSAVAEIQQDLQKERRSRGGGAGGGDFDEAEIYK
QMLVGFQMDQAKLGKETQAALREKEDEAKHWKKLYLKAMGGEEDGEG
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mRNA from alignment at Ecto-sp13_S_contig1088:1397..4659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1088.787.1 ID=mRNA_Ecto-sp13_S_contig1088.787.1|Name=mRNA_Ecto-sp13_S_contig1088.787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3263bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1088:1397..4659- (Ectocarpus species13 EcNAP12_S_4_19m)
TCACGGTTCTGTGGTTGATAGCAACGCGGAACAACGCGGCGGCACCTGGT
GTTTCTCATCGCTTCAGCCTACATCACCAGCAGCGCACGCACGTACTTCC
ACCCCACAGCCAAACAAGGAAGTCCCAGTGCGTAAGAGAGGGAGAGGTCG
GAGCAATTGGTTAGGAAAAGAGGAGCGGCTGCACGGAAGCATCGGAGAGT
TACTTTGACTATGTGGAACGCCATTGGTTCCAAGGTAAGGCAAATGAGTT
GTGTTGTATTTTGAAATGCTTCCGTACTTCATCAATGTTTACTAATACGA
GCAGTATTGACAACAGCACGTCCTTTCCTTCATCTAGATTGTAATAACAG
CAGTAGGTCTGCTTTCAGCAGCATCATCGTACGCTGTGCTGCTGTGCACG
CCTAGTGCTGTACCTGGCTAATGAGCATTCGTCCGGGAGCTTGCTGCACG
CAGCAGATGTACCATGCTCTTGTGCACTCGTTTTGAAACAAAATGGCTGC
CGCCGCAGCTGGGTTCTTCGCCCTCGTGATTCTCAGCTGTCGCGGTTCTT
TCCTAAGATGCACTGCTGTAGTGTTTCGTCACGTGTCACTCTTGACGCGG
CCGTATCGTGATGCGTTTTCTGGCAGCGGTCTCTGATTGATCAGCAGCGA
AGATAGCAGGTGCAGGTGCTGGGAATATGTATTTGCCTGACATGCTATGG
CGACGACCGTCTGCTTTCGCTCCTGCCGTCTTTACTCGAGCCATCATAAC
ACGTTGTATGCATACAAAACATACCGAGAGAGAAAACGCGCTGGATTTTA
TCTACTGCTGCGTCTGCTGTATTTTCATCGGTCAACTGCGACAGCTGCGG
CGATGTGTTGAGACCATGATGAACAGCGGGGAAAATCACACCGTCCCCCC
TCGCGAGCAACTCGTGACACCCTTGACTGCCCAGGCACCTGCAATAGACA
CCAGCGCCTTCCAGTTTACCGTAACAAAAGCAATACCGCGAGCTACAGTA
GACACTCTGGTCGAGGGAACAAATGAAACAAGATGAGTTCTTGTTGTGTT
TATACGAAGTACACTGTACCAGTAAAGCTACTGCTGTAAATACTGCTGTG
CAACAACGGCGGCAACCGGGCGCGTTGTGTGGATTAAGTGTTCCCCGAAC
CGTCGCGTTTCACGCCTGTTTTGGCAACCACCGCCAAGTGACGGGCGTCG
AAAGCAGCAGACCGTTTCAAACTGCTGTCGCACGCAAGGACAATGCTTGA
TGGATCAACATAACAAATACTTCAAGTTTAGCATATAATGTACATGCGTC
GTAACGACAGTTTGGCCCTTCGATCTTGACGAACGCTGTCTCGTGAAGAG
GCAGCTGATCCCCGAAGCACGCTTCCACCACGCCAGCAGAAGAGAGCCGA
CTGTTCCAAGTGAAGCGCCGCTCTGGTCGCGACTCTTTGGAAGGGTACCG
AATTGTTCGTGTCGGCTAAAAGTTGCTCCATTCATGTGTTCCGATGCTGT
ACATGTTCGTTCATCAGTGTTTTTGAAGACGGTTTGGCGCGTGCGGCGGA
CCCTTGAATCGCAAACGCTCGGCTCCTCCGCGTGTGATGTTGTTCCTTGT
GCTCGCGAAGCTTGCCGGATGCCTTCGTTGTCGATCGGCAGGGAGGGTGG
CAATGTTCCGCTATAATACCTCGACCTTGAAACCGGCTGGAAGCGGTGGA
AGTTTCGGTGACAAAACAGCAGCTGTTGCTCCGTACGGCACTTGAGTCGT
GAGGGACCATCGCAGTTGTCCCCGTATTGACGCCCTCTTTTGAGTTATCC
TCTAGACTTGTATCCACCGGAGCCGAACGATATTCCTCCGCGTCAGCACG
GAGTGTGACCCAGGTGTGCCAGGGAGAAAGAGGTTATATGATGGTCACAT
GATTTGGGTGCAACTCTTGTGTCAAAAGAGTGAAGACGACACTTCCCTCT
CAGCAACAAACGCCGACGGCAGCGACACAGAGCGTCGTGCGTGCCTGTTC
CGGCTTCGCGTTTTGTAGGACACAAGCATGATGCCGTGGATGAAGCTAGT
GTGTGAGAGAATAGATCCGACGAAATCAGCCGTTGCTGTTGCTGCCGTTG
CTACTGCTGCTGCCGCTACGGCAGGCATGAGCCAAGACTTGTCGGTGTTG
CTGCCCCTCGTCATGCTACCGCTGCTGCTGCTGTTTATTACGCGAACAGG
CCCAAAAGGTGGCGCAGGGCATGAGCTCCGCCGTCGCCGAGATCCAGCAG
GACCTCCAGAAGGAGCGACGAAGCAGGGGCGGGGGGGCCGGCGGCGGCGA
CTTCGATGAGGCAGAGGTACGCATACGCGTATGCGATGTCTCAGGGGCGC
CTAAAGCTCGTTGTTATCGTCCAGGTCTTGTTGTTGCTGTAGTTCTCCGT
CGTCGCCGTTGTTCTGACGATCGTTGCCATGCTGCTCCTTCGTTGCGAAA
TCCGATGTTTTCCGTGTCTGAAGTCTCGCGATTCTCTTAATCTCGTCGTC
GTCAGGTCGTAGCCATTCTCGTCATGTCCTATCCTTCTCGTCTTGTTTGT
GTCTCGGACCGACTCAAGTCGCCTTCTCAACACAAGCGCCTTTCTTCGTT
GAGCGCAAACCCTCTTGGATACCATGACACCCTTCTGACAACCCGAAAAC
ACGCCTTGCCAGCACCAAAACTATCGAAGAGGCTCTCTTGTGCGACGATG
CCGTAAAGATCACCGGCACGCCCCGTGGTCTGTTTAAATTGCCGTGCGTT
GCGCCCTTGGCGAGTTTTGCGGATGATGGAGCCATAGCCAGACTAGTAGA
AGGGCGCCCCACGTCTTGTCGACTGAGCGTACTTCCCTCCGTCGAATCCG
GTTGCCATGGATAGCCAGCTCTGTTCGCTGCTGCCACACTGCAGAGAGTC
CGCCGCCCCCCCTGCAGTAGCACACGCAGGTTTATCTAGCGAAACATGGT
GGATAAAGCATGGAATTGGTGAAAAGTCTAAGGTTAGCGTTAGGGTCTAC
ATTGCGTCTGCCCCTCTATTGTTCTTACTAGACAAGCTTCAGAATTTCTT
TGCGCAAGAAGTCGTGCTCGAAACCCTCAACCCCCCCCCCCGGCCTCTCT
TCGAACCTCCCAGATCTACAAGCAAATGCTGGTGGGGTTCCAGATGGACC
AGGCGAAGCTAGGCAAGGAAACTCAGGCGGCCCTGAGAGAGAAAGAAGAC
GAGGCGAAACATTGGAAGAAGCTGTACCTTAAGGCCATGGGGGGGGAAGA
GGATGGGGAAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1088:1397..4659-

>mRNA_Ecto-sp13_S_contig1088.787.1 ID=mRNA_Ecto-sp13_S_contig1088.787.1|Name=mRNA_Ecto-sp13_S_contig1088.787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1088:1397..4659- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGAACGCCATTGGTTCCAAGGCCCAAAAGGTGGCGCAGGGCATGAG
CTCCGCCGTCGCCGAGATCCAGCAGGACCTCCAGAAGGAGCGACGAAGCA
GGGGCGGGGGGGCCGGCGGCGGCGACTTCGATGAGGCAGAGATCTACAAG
CAAATGCTGGTGGGGTTCCAGATGGACCAGGCGAAGCTAGGCAAGGAAAC
TCAGGCGGCCCTGAGAGAGAAAGAAGACGAGGCGAAACATTGGAAGAAGC
TGTACCTTAAGGCCATGGGGGGGGAAGAGGATGGGGAAGGT
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