mRNA_Ecto-sp13_S_contig10874.783.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10874.783.1 vs. uniprot
Match: D8LGC2_ECTSI (Lon protease homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC2_ECTSI) HSP 1 Score: 485 bits (1249), Expect = 4.850e-160 Identity = 303/309 (98.06%), Postives = 303/309 (98.06%), Query Frame = 1
Query: 1 MSSEDVAPVQLPVFVVRDRVLFPGGLLRLSVGKPKSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEEGSASXXXXXXXXXXXXXXXXXXXXXXXXXX-EGRILSTMSRVGCAAKVVQMGRVTGSETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRLFDQGSIADAEVKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQARIAILEETSLEKRLRRVLELVREQTRVLSIASKIKSEVEGKLNSRHREYYLRQQLKAIRSELGEE 924
MSSEDVAPVQLPVFVVRDRVLFPGGLLRLSVGKPKSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEEGSASXXXXXXXXXXXXXXXXXXXXXXXXXX EGRILSTMSRVGCAAKVVQMGRVTGSETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRL DQGSIADAEVKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQA ILEETSLEKRLRRVLELVREQTRVLSIASKI SEVEGKLNSRHREYYLRQQLKAIRSELGEE
Sbjct: 1 MSSEDVAPVQLPVFVVRDRVLFPGGLLRLSVGKPKSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEEGSASXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRILSTMSRVGCAAKVVQMGRVTGSETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRLHDQGSIADAEVKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQA---ILEETSLEKRLRRVLELVREQTRVLSIASKINSEVEGKLNSRHREYYLRQQLKAIRSELGEE 306
BLAST of mRNA_Ecto-sp13_S_contig10874.783.1 vs. uniprot
Match: A0A6H5K538_9PHAE (Lon N-terminal domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K538_9PHAE) HSP 1 Score: 395 bits (1015), Expect = 1.120e-134 Identity = 246/312 (78.85%), Postives = 250/312 (80.13%), Query Frame = 1
Query: 1 MSSEDVAPVQLPVFVVRDRVLFPGGLLRLSVGKPKSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEEGSASXXXXXXXXXXXXXXXXXXXXXXXXXXEGRILSTMSRVGCAAKVVQMGRVTGSETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRLFDQGSIADAEVKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQARI----AILEETSLEKRLRRVLELVREQTRVLSIASKIKSEVEGKLNSRHREYYLRQQLKAIRSELGEE 924
MS +DVAPVQLPVFVVRDRVLFPGGLLRLSVGKP+SVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEE SAS XXXXXXXXXXXEGRILSTMSRVGCAAKVVQMGRVTG+ETFK VKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQARI AILEETSLEKRLRRVLELVREQTR+LSIASKI SEVEGKLNSRHREYYLRQQLKAIRSELGEE
Sbjct: 1 MSPDDVAPVQLPVFVVRDRVLFPGGLLRLSVGKPQSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEERSASDDVAIFRDHQQRPGAXXXXXXXXXXXEGRILSTMSRVGCAAKVVQMGRVTGNETFK----------------------------------------VKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQARIVSCGAILEETSLEKRLRRVLELVREQTRILSIASKINSEVEGKLNSRHREYYLRQQLKAIRSELGEE 272
BLAST of mRNA_Ecto-sp13_S_contig10874.783.1 vs. uniprot
Match: A0A2R5GJ38_9STRA (Lon protease homolog n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJ38_9STRA) HSP 1 Score: 160 bits (404), Expect = 2.600e-40 Identity = 106/305 (34.75%), Postives = 161/305 (52.79%), Query Frame = 1
Query: 22 PVQLPVFVVRDRVLFPGGLLRLSVGKPKSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEEGSASXXXXXXXXXXXXXXXXXXXXXXXXXXEGRIL---STMSRVGCAAKVVQMGRVTG--SETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRLFDQGSIADAEVKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQARIAILEETSLEKRLRRVLELVREQTRVLSIASKIKSEVEGKLNSRHREYYLRQQLKAIRSELGE 921
P QLP+ +R RVL PG LLRL +G+P SVRLVES+ + + G + V+ A AS G ++ + G A+V+Q+ ++ G S F++++LV+G+SR+ + + E + D GS+ D EV+AL++N+RE AQ LLE+ + R+ P +E++D + ASPG +AD+LA++++ +KQ +L E L RLRR LEL+ Q V ++ KI++EVEGKL + REYYLRQQL+AI ELG+
Sbjct: 13 PTQLPLLTIRRRVLVPGVLLRLQIGRPNSVRLVESIWDSSTRSFKK---------GALLAVSTVKTESDAASSSSGASAKKAIGDKNNNKDAGAGAEPLEVVDMPGASEDGPTSCYKAGTVARVLQLSKINGKDSSNFQFTLLVEGLSRMSVEEIVRTEPYTVAKIAWKADIGSVNDTEVRALAINVREIAQDLLELQRKRNSPLGKKTKEVIDNLDRASPGRLADLLAANLDASVEEKQH---VLAEQELAPRLRRTLELLNRQVEVFRMSDKIQNEVEGKLKNTQREYYLRQQLRAINEELGQ 305
BLAST of mRNA_Ecto-sp13_S_contig10874.783.1 vs. uniprot
Match: A0A4D9CQU2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQU2_9STRA) HSP 1 Score: 136 bits (343), Expect = 3.320e-32 Identity = 111/330 (33.64%), Postives = 157/330 (47.58%), Query Frame = 1
Query: 22 PVQLPVFVVRDRVLFPGGLLRLSVGKPKSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEEGSASXXXXXXXXXXXXXXXXXXXXXXXXXXEGRILSTMSRVGCAAKVVQMGRVTGSETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRLFDQGSIADAEVKALSLNLREAAQALLEVL-----------------------------KSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQARIAILEETSLEKRLRRVLELVREQTRVLSIASKIKSEVEGKLNSRHREYYLRQQLKAIRSELGEE 924
P LP+ V+R+RVLFPGGLLRLSVGKP+SVRL+E L +++ L + GG + A+ GA + SR G + K + + +R+ S+ EE GS+AD+ VKAL++NLR+A Q L + L KS+S P +ARE+ +++ ASP A+AD L + +N+P KQ +LEE LE RLR LEL+REQ ++ ++SKI +EVE +L++R REYYLRQQLK I+ +LGEE
Sbjct: 23 PSTLPLLVIRNRVLFPGGLLRLSVGKPRSVRLIEDFLVSQKRPLQPQHHSSPLRGGFIAVAALIP---GASE----------------------------------------SREGGGGXXREGXXXXXXXXXKGLLALTPYFIVRVRSLGEE--------------GSLADSRVKALAINLRDATQELHKALRARATGALDVTGNGSSSNKNALDGATGVTKSQSQPFLPSAREVAESIQNASPSALADELVTHLNVPLEAKQR---LLEEPRLEARLRGALELIREQVEIIRLSSKISNEVEDRLSTRQREYYLRQQLKTIKEQLGEE 292
BLAST of mRNA_Ecto-sp13_S_contig10874.783.1 vs. uniprot
Match: A0A1F9KWE5_9DELT (Lon protease n=1 Tax=Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 TaxID=1797895 RepID=A0A1F9KWE5_9DELT) HSP 1 Score: 130 bits (327), Expect = 3.980e-30 Identity = 99/302 (32.78%), Postives = 163/302 (53.97%), Query Frame = 1
Query: 16 VAPVQLPVFVVRDRVLFPGGLLRLSVGKPKSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEEGSASXXXXXXXXXXXXXXXXXXXXXXXXXXEGRILSTMSRVGCAAKVVQMGRVTGSETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRLFDQGSIADAEVKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQARIAILEETSLEKRLRRVLELVREQTRVLSIASKIKSEVEGKLNSRHREYYLRQQLKAIRSELGE 921
V P +LPV +R+ VLFPG ++ L +G+PK+VRLVE + +++G LVA+ QR VD+ + + + +GCAA++V++ + + +SV+VQG+SR+RL S+ L + D S EV+AL+++L++ A+ +L ++ +A E+L+ V A G +AD++AS++ ++KQ+ +LE L +R+RRVLEL+ Q VL +++KI S+V+G+++ REYYLRQQLKAI+ ELGE
Sbjct: 34 VIPEELPVLTLRNTVLFPGSIVPLGIGRPKTVRLVEESI--KDNG----------------LVAVVAQRDPDVDDP---------------------------------VPADLYGLGCAARLVKLVKASKDN---FSVVVQGLSRVRLTEYSQSLPYLKARI-HAVDDSSTNVVEVEALTMSLKKTAREVLRLIPELPP----SAAELLERVDDA--GVLADLIASNVEASVDEKQS---VLETFDLVQRMRRVLELLSRQLEVLKLSNKISSQVKGEMSKTQREYYLRQQLKAIKDELGE 271
BLAST of mRNA_Ecto-sp13_S_contig10874.783.1 vs. uniprot
Match: A0A2E6VX71_9DELT (Lon protease n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E6VX71_9DELT) HSP 1 Score: 128 bits (322), Expect = 1.840e-29 Identity = 91/300 (30.33%), Postives = 163/300 (54.33%), Query Frame = 1
Query: 22 PVQLPVFVVRDRVLFPGGLLRLSVGKPKSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEEGSASXXXXXXXXXXXXXXXXXXXXXXXXXXEGRILSTMSRVGCAAKVVQMGRVTGSETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRLFDQGSIADAEVKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQARIAILEETSLEKRLRRVLELVREQTRVLSIASKIKSEVEGKLNSRHREYYLRQQLKAIRSELGE 921
P +LP+ +R+ V FPG ++ L++G+ K++RL+E TR+ G L+ I TQ+ +D + + R+G A+V+++ R TG + F +++V+G+SR + ++EE T+ D+G+ D EV+ALSLNL+ A+ ++++L + A+++L++++ G +AD++ ++I+ +KQ ILE L++RL++VLEL+ Q VL +++KI S+V+G+++ REYYLRQQLKAI+ ELG+
Sbjct: 22 PSELPILPLRNSVFFPGAVMPLTIGRAKTIRLIEET--TRDSG----------------LLGIITQKAPEIDNP---------------------------------TIEDLYRIGTVARVIKLAR-TGKDGF--NIVVEGISRFEINQFTQEEPYFTATITPRLDEGT-GDVEVEALSLNLKTTAREVIDMLPEIP----VMAKQLLESIN--DGGHLADLITANIDATIEEKQE---ILEAVQLKRRLKKVLELLSRQYEVLKLSNKINSQVKGEMSRTQREYYLRQQLKAIKDELGD 257
BLAST of mRNA_Ecto-sp13_S_contig10874.783.1 vs. uniprot
Match: UPI0019A15C56 (Endopeptidase La n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI0019A15C56) HSP 1 Score: 111 bits (278), Expect = 1.140e-23 Identity = 94/305 (30.82%), Postives = 150/305 (49.18%), Query Frame = 1
Query: 22 PVQLPVFV----VRDRVLFPGGLLRLSVGKPKSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEEGSASXXXXXXXXXXXXXXXXXXXXXXXXXXEGRILSTMSRVGCAAKVVQMGRVTGSETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRLFDQGSIA-DAEVKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQARIAILEETSLEKRLRRVLELVREQTRVLSIASKIKSEVEGKLNSRHREYYLRQQLKAIRSELGE 921
P +LP V +R+ VLFPG ++ + VG+PKSV+LVE + ++ I TQ+ V++ + RVGCAA+++++ ++ YSV++QGV RIR+ ++ + + V L D S D E +AL LN++E A+ L+ ++ PR A +LD+ S PG VAD++ S+++I +KQ +LE + RLR+VL L+ Q +L + +I S+V+ ++ REY LRQQLKAI+ ELGE
Sbjct: 9 PHELPDVVSLLPLRNSVLFPGAIIPIDVGRPKSVKLVEEAIAHERP-----------------IIGIVTQKEARVEDPSDGD---------------------------------IHRVGCAARILKVIKLARDN---YSVILQGVMRIRIDEITGHDPFIQAKVSELRDVISPRLDVEAEALVLNIKETARKLISLVPEL--PR--EAAALLDSTS--DPGQVADMVISNLDIEPAEKQE---VLEAIDVLDRLRKVLTLLTRQLEILKVRERINSQVQEEMGHSQREYVLRQQLKAIKGELGE 251
BLAST of mRNA_Ecto-sp13_S_contig10874.783.1 vs. uniprot
Match: G4Z1Q4_PHYSP (Lon protease homolog n=7 Tax=Phytophthora TaxID=4783 RepID=G4Z1Q4_PHYSP) HSP 1 Score: 111 bits (278), Expect = 1.190e-23 Identity = 95/314 (30.25%), Postives = 155/314 (49.36%), Query Frame = 1
Query: 4 SSEDVAPVQLPVFVVRDRVLFPGGLLRLSVGKPKSVRLVESLLG-TREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEEGSASXXXXXXXXXXXXXXXXXXXXXXXXXXEGRILSTMSRVGCAAKVVQMGRVTGSETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRLFDQGSIADAE-------VKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQARIAILEETSLEKRLRRVLELVREQTRVLSIASKIKSEVEGKLNSRHREYYLRQQLKAIRSELGE 921
+S AP+QLP+ + +VLFP LRL++ +++L++ L+ R + R + GG + ++ +AIFT+R A +G A + VG A+VVQ+ R+ G SVLVQG+ R++L V++ L G+V RL + A+ ++ L+L L+ Q LE KS R N ++DA+ +S G +ADV+ S +N+ ++KQ +LE + R + L+ ++T + KI+SEV+ KL +E+ LRQQL+AI+ ELGE
Sbjct: 6 TSTATAPLQLPILPLDGKVLFPRTYLRLAITSASALQLLKDLVWEVRAPKMSRRSGGGDTAASTSLTLAIFTRRSSA---DGDADTHQVLPTT-------------------AEAKDAVYSVGTVARVVQLTRMQGGVP-GLSVLVQGLHRVQLQDVAQTRPYLVGSVQRLVAPVPVKGAKAEETALTLEQLALRLKHLTQEYLETAKSAPLLRRSNG--LVDAIGNSSAGELADVVVSYLNVGVDEKQQ---VLEAVPVALRCELAVALLEQETEKARLQRKIQSEVQDKLEGTRKEFLLRQQLEAIKKELGE 291
BLAST of mRNA_Ecto-sp13_S_contig10874.783.1 vs. uniprot
Match: A0A534NCQ0_9DELT (Endopeptidase La (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534NCQ0_9DELT) HSP 1 Score: 107 bits (268), Expect = 1.410e-23 Identity = 64/189 (33.86%), Postives = 128/189 (67.72%), Query Frame = 1
Query: 355 MSRVGCAAKVVQMGRVTGSETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRLFDQGSIADAEVKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQARIAILEETSLEKRLRRVLELVREQTRVLSIASKIKSEVEGKLNSRHREYYLRQQLKAIRSELGE 921
+ ++G A++V++ ++ G + YS++VQG++R R++ + +E L + + D+ + + E++AL +NL++ A+ ++E++ P A A E++++++ PG +AD++A+++++P +KQ +LE L++R++ VLEL+ + +L ++SKI S+V+G+++ REYYLRQQLKAI+ ELGE
Sbjct: 88 LHKMGTVARIVKLLKM-GEDN--YSLVVQGLARFRVVELVQEHPYLKARIEPVDDKSPVDEVEIEALGINLKKLAREVIEMMPEL--PAA--ATELVESIT--QPGHLADLIAANVDVPIEEKQQ---VLETVDLKERMKLVLELLNRKREILKLSSKIDSQVKGEMSKTQREYYLRQQLKAIKEELGE 264
BLAST of mRNA_Ecto-sp13_S_contig10874.783.1 vs. uniprot
Match: A0A2S9XY18_9DELT (Lon protease n=4 Tax=Myxococcales TaxID=29 RepID=A0A2S9XY18_9DELT) HSP 1 Score: 110 bits (275), Expect = 2.830e-23 Identity = 87/300 (29.00%), Postives = 148/300 (49.33%), Query Frame = 1
Query: 22 PVQLPVFVVRDRVLFPGGLLRLSVGKPKSVRLVESLLGTREDGLHRHANGGGSGGGPTILVAIFTQRVGAVDEEGSASXXXXXXXXXXXXXXXXXXXXXXXXXXEGRILSTMSRVGCAAKVVQMGRVTGSETFKYSVLVQGVSRIRLLSVSEEELMLHGTVVRLFDQGSIADAEVKALSLNLREAAQALLEVLKSRSHPRAMNAREILDAVSAASPGAVADVLASSINIPTNQKQARIAILEETSLEKRLRRVLELVREQTRVLSIASKIKSEVEGKLNSRHREYYLRQQLKAIRSELGE 921
P + + +R+ VLFPG ++ + VG+PKSV+L+E + ++ I TQ+ ++ G+ + VGCA +++++ ++ YSV++QGV RI++ + +E L V L + + E +AL N++E A+ L+ ++ PR A +LD+VS PG VAD++AS+++I ++KQ +LE + RLR+VL L+ Q +L I +I ++V+ ++ REY LRQQLKAI+ ELGE
Sbjct: 15 PEVVSLLPLRNSVLFPGSIIPIDVGRPKSVKLIEEAIAAERP-----------------VIGIVTQKAARTEDPGA---------------------------------DDLHEVGCAVRILKVIKLARDN---YSVILQGVMRIKIEELVSDEPFLQARVSELPEHDP-SPLEAEALVANIKETAKKLISLVPEL--PR--EAAALLDSVS--EPGQVADLVASNLDIEPSEKQE---VLEAFDVSTRLRKVLTLLTRQLEILEIRERINTQVQEEMGHSQREYVLRQQLKAIKGELGE 251 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10874.783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10874.783.1 >prot_Ecto-sp13_S_contig10874.783.1 ID=prot_Ecto-sp13_S_contig10874.783.1|Name=mRNA_Ecto-sp13_S_contig10874.783.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp MSSEDVAPVQLPVFVVRDRVLFPGGLLRLSVGKPKSVRLVESLLGTREDGback to top mRNA from alignment at Ecto-sp13_S_contig10874:96..4619- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10874.783.1 ID=mRNA_Ecto-sp13_S_contig10874.783.1|Name=mRNA_Ecto-sp13_S_contig10874.783.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4524bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10874:96..4619- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10874:96..4619- >mRNA_Ecto-sp13_S_contig10874.783.1 ID=mRNA_Ecto-sp13_S_contig10874.783.1|Name=mRNA_Ecto-sp13_S_contig10874.783.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10874:96..4619- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |