mRNA_Ecto-sp13_S_contig10873.782.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10873.782.1
Unique NamemRNA_Ecto-sp13_S_contig10873.782.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10873.782.1 vs. uniprot
Match: A0A6H5JGP2_9PHAE (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP2_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.140e-34
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:   31 DLPEFVETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPNASEMNVMDLQ 243
            DLPEFVETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPNA+E+NVMDLQ
Sbjct:  331 DLPEFVETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPNATEINVMDLQ 401
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10873.782.1 vs. uniprot
Match: D7G3V4_ECTSI (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3V4_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.960e-34
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:   28 QDLPEFVETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPNASEMNVMDLQ 243
            +DL EFVETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPNA+EMNVMDLQ
Sbjct:  271 KDLTEFVETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPNATEMNVMDLQ 342
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10873.782.1 vs. uniprot
Match: A0A836CHK5_9STRA (Rho GTPase activation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHK5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 7.230e-11
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   58 RVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPNASEMNVMDLQ 243
            R L+A+ P I+  C RLLFA L RV+L + +N M  ENLGIVFAPNLLR+ +A E  V DLQ
Sbjct:  466 RALLARAPPIHEACARLLFALLHRVNLCATDNKMPAENLGIVFAPNLLRSADAGEPCVADLQ 527
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10873.782.1 vs. uniprot
Match: A0A835YT43_9STRA (Rho GTPase activation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT43_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.830e-10
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   58 RVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPNASEMNVMDLQ 243
            R L+A LP   R C RLLFA L RV L + +N MT ENLGIVFAPNLLR   A +  + +LQ
Sbjct:  516 RPLLAALPPTPRACARLLFALLHRVHLCAGDNKMTAENLGIVFAPNLLRPAEAGQPTMAELQ 577
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10873.782.1 vs. uniprot
Match: B2X2D4_MOUSE (ASL1/ARHGAP15 fusion n=1 Tax=Mus musculus TaxID=10090 RepID=B2X2D4_MOUSE)

HSP 1 Score: 56.2 bits (134), Expect = 2.350e-7
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   28 QDLPEFVETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPNAS 219
            QD  E +ET+R LV +LP  N   +++LF  L ++   +++NLM+T++LGIVF P LLRA N S
Sbjct:  164 QDSNEKIETMRSLVKRLPPPNHDTMKILFRHLTKIVAKASQNLMSTQSLGIVFGPTLLRAENES 227
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10873.782.1 vs. uniprot
Match: A0A8C6HPD8_MUSSI (Rho-GAP domain-containing protein n=2 Tax=Mus spicilegus TaxID=10103 RepID=A0A8C6HPD8_MUSSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.970e-7
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   28 QDLPEFVETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPNAS 219
            QD  E +ET+R LV +LP  N   +++LF  L ++   +++NLM+T++LGIVF P LLRA N S
Sbjct:  229 QDSNEKIETMRSLVKRLPPPNHDTMKILFRHLTKIVAKASQNLMSTQSLGIVFGPTLLRAENES 292
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10873.782.1 vs. uniprot
Match: RHG15_MOUSE (Rho GTPase-activating protein 15 n=25 Tax=Muroidea TaxID=337687 RepID=RHG15_MOUSE)

HSP 1 Score: 56.2 bits (134), Expect = 3.260e-7
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   28 QDLPEFVETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPNAS 219
            QD  E +ET+R LV +LP  N   +++LF  L ++   +++NLM+T++LGIVF P LLRA N S
Sbjct:  388 QDSNEKIETMRSLVKRLPPPNHDTMKILFRHLTKIVAKASQNLMSTQSLGIVFGPTLLRAENES 451
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10873.782.1 vs. uniprot
Match: A0A6Q2ZBI2_ESOLU (Chimerin 1 n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2ZBI2_ESOLU)

HSP 1 Score: 54.7 bits (130), Expect = 7.010e-7
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:   25 LQDLPEFVETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPNASEMNVMD 237
            L+D  + +E  R  +  LP  +   +R L A L RV+L   ENLM +ENLGIVF P L+RAPN   M  ++
Sbjct:  137 LEDAEKRLEAFREALELLPAAHSETLRYLLAHLKRVTLNEKENLMNSENLGIVFGPTLMRAPNLDAMTALN 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10873.782.1 vs. uniprot
Match: UPI00188F155C (rho GTPase-activating protein 15 n=1 Tax=Talpa occidentalis TaxID=50954 RepID=UPI00188F155C)

HSP 1 Score: 54.3 bits (129), Expect = 8.140e-7
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   28 QDLPEFVETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPN 213
            QD    +ETV+ LV +LP  NR  +++LF  L ++   +++NLM+T++LGIVF P LLRA N
Sbjct:  118 QDNNTRIETVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASQNLMSTQSLGIVFGPTLLRAEN 179
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10873.782.1 vs. uniprot
Match: G5BFA7_HETGA (Rho GTPase-activating protein 15 n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=G5BFA7_HETGA)

HSP 1 Score: 54.3 bits (129), Expect = 9.720e-7
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   46 VETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAENLMTTENLGIVFAPNLLRAPN 213
            +ET++ LV +LP  NR  +++LF  L RV   +++NLM+T++LGIVF P LLRA N
Sbjct:  124 IETIKYLVQKLPPPNRDTMKVLFGHLTRVVAGASKNLMSTQSLGIVFGPTLLRAEN 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10873.782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGP2_9PHAE1.140e-3497.18Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
D7G3V4_ECTSI1.960e-3495.83Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CHK5_9STRA7.230e-1158.06Rho GTPase activation protein n=1 Tax=Tribonema mi... [more]
A0A835YT43_9STRA8.830e-1056.45Rho GTPase activation protein n=1 Tax=Tribonema mi... [more]
B2X2D4_MOUSE2.350e-746.88ASL1/ARHGAP15 fusion n=1 Tax=Mus musculus TaxID=10... [more]
A0A8C6HPD8_MUSSI2.970e-746.88Rho-GAP domain-containing protein n=2 Tax=Mus spic... [more]
RHG15_MOUSE3.260e-746.88Rho GTPase-activating protein 15 n=25 Tax=Muroidea... [more]
A0A6Q2ZBI2_ESOLU7.010e-743.66Chimerin 1 n=1 Tax=Esox lucius TaxID=8010 RepID=A0... [more]
UPI00188F155C8.140e-746.77rho GTPase-activating protein 15 n=1 Tax=Talpa occ... [more]
G5BFA7_HETGA9.720e-750.00Rho GTPase-activating protein 15 n=1 Tax=Heterocep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10873contigEcto-sp13_S_contig10873:5325..5591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score131.3
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog2880.D7G3V4
Model size267
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG4270@1,KOG4270@2759
Cds size267
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462560.5320606-CDS-Ecto-sp13_S_contig10873:5324..55911681462560.5320606-CDS-Ecto-sp13_S_contig10873:5324..5591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10873 5325..5591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10873.782.1prot_Ecto-sp13_S_contig10873.782.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10873 5325..5591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10873.782.1

>prot_Ecto-sp13_S_contig10873.782.1 ID=prot_Ecto-sp13_S_contig10873.782.1|Name=mRNA_Ecto-sp13_S_contig10873.782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MRSLASRLLQDLPEFVETVRVLVAQLPEINRTCVRLLFAFLLRVSLLSAE
NLMTTENLGIVFAPNLLRAPNASEMNVMDLQVGGWALAY
back to top

mRNA from alignment at Ecto-sp13_S_contig10873:5325..5591-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10873.782.1 ID=mRNA_Ecto-sp13_S_contig10873.782.1|Name=mRNA_Ecto-sp13_S_contig10873.782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10873:5325..5591- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTTCGCTCGCTTCGCGTCTTCTGCAGGACTTGCCGGAGTTCGTGGA
GACGGTGAGGGTCTTGGTGGCCCAGCTCCCGGAGATCAACCGCACGTGCG
TCCGGCTCCTCTTCGCCTTCCTGCTCCGGGTTAGCCTGCTCTCGGCGGAG
AACCTCATGACCACGGAGAACCTCGGGATCGTCTTCGCGCCGAACCTGCT
AAGAGCACCCAACGCTTCCGAGATGAACGTGATGGATTTGCAGGTGGGAG
GTTGGGCGTTGGCCTAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10873:5325..5591-

>mRNA_Ecto-sp13_S_contig10873.782.1 ID=mRNA_Ecto-sp13_S_contig10873.782.1|Name=mRNA_Ecto-sp13_S_contig10873.782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10873:5325..5591- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTTCGCTCGCTTCGCGTCTTCTGCAGGACTTGCCGGAGTTCGTGGA
GACGGTGAGGGTCTTGGTGGCCCAGCTCCCGGAGATCAACCGCACGTGCG
TCCGGCTCCTCTTCGCCTTCCTGCTCCGGGTTAGCCTGCTCTCGGCGGAG
AACCTCATGACCACGGAGAACCTCGGGATCGTCTTCGCGCCGAACCTGCT
AAGAGCACCCAACGCTTCCGAGATGAACGTGATGGATTTGCAGGTGGGAG
GTTGGGCGTTGGCCTAC
back to top