mRNA_Ecto-sp13_S_contig10869.777.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10869.777.1
Unique NamemRNA_Ecto-sp13_S_contig10869.777.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10869.777.1 vs. uniprot
Match: A0A6H5JRK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.360e-27
Identity = 82/117 (70.09%), Postives = 85/117 (72.65%), Query Frame = 2 
Query:   23 MAAGGRARLLAAWLPAVLMAGGAGTVSGVLVSTQPQRQEEQHQVLGVVGKSRHGGXXXXXN-SRLRGAGISTNPSFGSAGPPSA--AKTAFIELPQPEETGQEEARVKEAGASDKSG 364
            M  GG ARLLAAWLPAVLM GGAGTVSGVLVSTQ Q+                  XXXXX  S LRGAGISTNPSFGSAGPPSA  AKTAFIELP+PEETGQE AR KEAG SD+ G
Sbjct:    1 MRTGGIARLLAAWLPAVLM-GGAGTVSGVLVSTQLQQXXXXXXXXXXXXXXXXXXXXXXXXXSHLRGAGISTNPSFGSAGPPSAMMAKTAFIELPRPEETGQEGARTKEAGGSDEPG 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10869.777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JRK9_9PHAE4.360e-2770.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10869contigEcto-sp13_S_contig10869:332..3155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size364
Hectar predicted targeting categorysignal peptide
Exons2
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462560.233881-UTR-Ecto-sp13_S_contig10869:331..3531681462560.233881-UTR-Ecto-sp13_S_contig10869:331..353Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10869 332..353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462560.2514644-CDS-Ecto-sp13_S_contig10869:353..4111681462560.2514644-CDS-Ecto-sp13_S_contig10869:353..411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10869 354..411 +
1681462560.270602-CDS-Ecto-sp13_S_contig10869:2871..31551681462560.270602-CDS-Ecto-sp13_S_contig10869:2871..3155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10869 2872..3155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10869.777.1prot_Ecto-sp13_S_contig10869.777.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10869 354..3155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10869.777.1

>prot_Ecto-sp13_S_contig10869.777.1 ID=prot_Ecto-sp13_S_contig10869.777.1|Name=mRNA_Ecto-sp13_S_contig10869.777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MAAGGRARLLAAWLPAVLMAGGAGTVSGVLVSTQPQRQEEQHQVLGVVGK
SRHGGGSNNNNSRLRGAGISTNPSFGSAGPPSAAKTAFIELPQPEETGQE
EARVKEAGASDKSG
back to top

mRNA from alignment at Ecto-sp13_S_contig10869:332..3155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10869.777.1 ID=mRNA_Ecto-sp13_S_contig10869.777.1|Name=mRNA_Ecto-sp13_S_contig10869.777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2824bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10869:332..3155+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGTAGAGAGCTGGCGAGGATCATGGCCGCGGGTGGAAGAGCTCGGCTGT
TAGCTGCGTGGCTGCCGGCGGTGCTTATGGGTGAGTGCATGTGGGGTACA
CCGCCGTTCACGAAGTAGGTGCAGCCAGTGCGGAGGGGCAGAGAGGCACT
GCGCCCTCGCTTCCGTGATTTTGTTTGGTACACACGAGTTAGGAGGTCGT
CACGCATTCCGCCTTTTGCTGTGGCACAGTAGCAACAGCCTCACTGCTGT
GACTAGGCAGCGATCGTAGTGCCTTTTAGTAGATGTTGCGTTAGCGAATA
GCAAACGCTGTAGTGACACGTGTGGACTGCTGCTGGCTGCTGTGTAGCTG
CGGAGAGTTACTTCAAGTCAGTACATTTCTGTAGGTGGTACTTTGTGTCT
GTCGTCAGCGTACAACAGGTGCTGCAGACTCAGTGAATGTCGCGACCCCT
GAAACGGATACGCCTTGCGAACAAGCGAGAAGACGCTCTGTTACTGCTGG
TTGGCACACATGAGGGCGGATGGTATGCAATCTGATACAGCAGCCGTACG
TACAGCAGTTGTAGCTGGAGAGCTTATGCTCGCGGGCCAACATATTGCAA
CCCACATCATTTTTCACCCGCCTGCAAGTAATTCCAGCTGCTGTTACTTT
ACCCACGTAGACGGACATTTGTTTCGGGGGACACGTCCCTCTGGTGCTAT
CTGCGGATACCGCTGACCGCAATCAGACTCTGGCTGAGGCTAAGCCGCTG
AGCATGTTTACAACGCCAAATGCCTTCGATAATATCCAAGATTTGTTGGA
TTTGAATCTGCCGGTTGCGTGCGCAGATAGCGGAGTTTCATGATGTCACC
AACTCGCGCCTGCTGCTTCCCACGTCATGATGACCTCGACATGCACCGTC
ATCCATAGTACCATGTGGTGGGGTTGGATTGTGTTACAATAGTGTACAGT
AGTGTTGGAGAGCTTGGTTGTGTTGCATCTTGGACGCATCTTCTACGATT
ATTTCCTTCTCGAGAGTCGTGAAAATTCGGAGGACGTCCTTTCTCTCCAT
CAACAGAACAGCAACGAGGCTGCAGTGTGTCCCATCTACCCATCTACATG
AGCGTCGTATCTTGAAGTATCTACGTACACAAACAAGCGCTTTGCCGAGA
TGTCACATGCATTGCCATCTCTCTGCCGCGGGTGTCTACGTACGTACACA
AATAGTCTACGTACACCGTTTCCCGTCCAGATTATTAGTTCCGAGCTTTG
GTCGTCTTCAGTTGTTGCCCGGTGGACCGAACAATGTGAGGTTGATTCTA
AGAACGACACTTCAGCCAGCTGCGGTGGATTCTGCATGCGCATATGCGCA
GGTATTGGCAGCAACGCACAACTTTTCGGGGCTCCCCGCTACACGTTTTG
GTATCTCGAAAAACAAAAAAGGATCTGTGAGACCGTTGTCTCGGGCAGCA
ACGTTGTGTTGAAGCAAGGTTCAGCATCTAACCTACACTGACTCTATCTG
TCACCCCGAAGGTAGATCTCCGACAGGTCATCTGACGTCACAATCTGGGA
CAATCTGAGGTGGCATTCACACATCGTACTGCTGTAGACTACTGCTGTAC
ACCCACGCACCTGTACATAATGGGCCGTCACAATACACAGCGATTTTACG
TACATATAAATTTCCAAATCCGACCCTCCAGATCTCCAGATTGTCAGCAA
CTCTCTACACACCTCCCAATTTTAACAGGTTTCAAGTTTCCAAATTTCCA
AAAAAAAATTCTCTCGGCCACAGGGATCGAGGTTCAACGGTCTACGGATT
TGGAAATTTGGAAATTTGGAAGCGAAATAGCTGCCGGATATCACGACCCT
CGAAAGAAACACCAACATTTTTGAGCCGCGCGTTACCCTTCCATGTTGCC
CACATCCTGCATAAATAGACTACCCCAGATGTCGTAGGGAGTGAACCACC
TAACTCAAGAATGATAGTACTTCGTTGTCCCTTGAAGGATGAGAAACGAA
ATGCATGTCGCATCCATGAGCGTGCGTTTGGAAAATGGGCCTATTTTCCA
ACGCGGCAGCTGGGATCCTAGGAAATATTAGGCGATTTGGAATTTGGGCG
TTTGGAATTGGCCAAATTCCTCCGCGTAAGACGCTCAAATAATTATTTGG
GCTGAGAAAAGGACCCCCCCCCCAATAAAAATCCCGGAATAATCACGACG
TAAGACTCGGCCTTAAGAGATGAATACACAAGATGGCTACCAAACTGCCT
TTTTGAGCCTGTTACCCACAGGGGAGATATCGCTGTATGCTGTCTGGGAA
ACCGTAGACATGCAGGTAGCTTTCGCTCACGCTATGGATTCATTGCTAAT
CAATCTTAGACTTATTTCTATAGATAGAGATGGATTTGTTGTGTGATATT
TACTAAATAAAAAAAAACATGCGAAGTACTTGAAAACCTTCAAGGCGCAA
CGAACAGTACCCAGTTCTAATGCATGTCATAGTGCAAGGTGTCGACAACG
TCGTCCCCCCACCCTTTCCGGAAAAAAACACCGCACGCAGCAGGTGGTGC
CGGGACCGTTTCGGGTGTGCTCGTCTCCACTCAACCTCAGCGGCAAGAGG
AGCAGCACCAGGTCTTGGGCGTGGTGGGGAAGAGTCGTCACGGTGGCGGC
AGCAACAACAATAACAGCCGTCTGCGAGGTGCCGGCATCAGCACTAACCC
CTCCTTCGGATCCGCCGGACCTCCGTCAGCGGCAAAGACCGCTTTCATCG
AACTCCCGCAACCAGAGGAGACAGGACAAGAAGAAGCAAGGGTAAAGGAA
GCAGGGGCAAGCGACAAATCGGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10869:332..3155+

>mRNA_Ecto-sp13_S_contig10869.777.1 ID=mRNA_Ecto-sp13_S_contig10869.777.1|Name=mRNA_Ecto-sp13_S_contig10869.777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10869:332..3155+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGCGGGTGGAAGAGCTCGGCTGTTAGCTGCGTGGCTGCCGGCGGT
GCTTATGGCAGGTGGTGCCGGGACCGTTTCGGGTGTGCTCGTCTCCACTC
AACCTCAGCGGCAAGAGGAGCAGCACCAGGTCTTGGGCGTGGTGGGGAAG
AGTCGTCACGGTGGCGGCAGCAACAACAATAACAGCCGTCTGCGAGGTGC
CGGCATCAGCACTAACCCCTCCTTCGGATCCGCCGGACCTCCGTCAGCGG
CAAAGACCGCTTTCATCGAACTCCCGCAACCAGAGGAGACAGGACAAGAA
GAAGCAAGGGTAAAGGAAGCAGGGGCAAGCGACAAATCGGGA
back to top