mRNA_Ecto-sp13_S_contig10862.771.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10862.771.1
Unique NamemRNA_Ecto-sp13_S_contig10862.771.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10862.771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10862contigEcto-sp13_S_contig10862:2318..3904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size536
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-21_001100.2
Cds size525
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462559.761983-UTR-Ecto-sp13_S_contig10862:2317..23281681462559.761983-UTR-Ecto-sp13_S_contig10862:2317..2328Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10862 2318..2328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462559.7755876-CDS-Ecto-sp13_S_contig10862:2328..26351681462559.7755876-CDS-Ecto-sp13_S_contig10862:2328..2635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10862 2329..2635 +
1681462559.7890046-CDS-Ecto-sp13_S_contig10862:3686..39041681462559.7890046-CDS-Ecto-sp13_S_contig10862:3686..3904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10862 3687..3904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10862.771.1prot_Ecto-sp13_S_contig10862.771.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10862 2329..3904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10862.771.1

>prot_Ecto-sp13_S_contig10862.771.1 ID=prot_Ecto-sp13_S_contig10862.771.1|Name=mRNA_Ecto-sp13_S_contig10862.771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
MRRPCSFASFVSTTGSSAETTQRHLQWLPQCLPRRRQRIAASRRRRLMSP
QVARGSAAPAEEPDDAATAAAAAAAAAAAVFRQLDAGLESDEEDDAMVFG
IKGAYSNVSSTPPSGERETHAASPPVATEVPPARQDSKRRRRRTTRSSSP
VTQHATSAGGSASTKGPGRGAGRRE
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mRNA from alignment at Ecto-sp13_S_contig10862:2318..3904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10862.771.1 ID=mRNA_Ecto-sp13_S_contig10862.771.1|Name=mRNA_Ecto-sp13_S_contig10862.771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1587bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10862:2318..3904+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGCAGGGAGATGCGTCGCCCATGCTCCTTCGCATCCTTTGTGTCTACC
ACTGGAAGCAGCGCTGAGACCACCCAAAGACATCTGCAATGGCTTCCCCA
GTGTTTGCCACGAAGGAGGCAGAGGATAGCCGCGTCGAGGAGGCGACGTC
TCATGTCACCACAGGTTGCGAGAGGTTCCGCCGCACCTGCTGAGGAGCCG
GATGATGCTGCAACAGCAGCGGCAGCAGCGGCAGCAGCGGCAGCGGCCGT
GTTCCGGCAGCTGGATGCTGGCTTGGAAAGTGATGAAGAGGACGATGCGA
TGGTGTTCGGCATCAAAGGTGACCATGCGCCCTGTCGGCGTGGTCTCAGA
AACAGCAGTGTCGGGCGAGAGTTCAACCATGGCATCGGACGTTTGTTGTG
CGATTGCCGGCCACGGAGCGTTGGGTACAGCAGTAGCTCCCGCGCGGCGG
GCGTGAGGGATGGGGCGAATGTTGTGAGAAGTCGACTTTTCTTTAACTGG
GTCGCGTACGCGTGGAATTATCGTGGTTCCTCATGAGGTTCGTGGGTACA
ATAATAGGTTTCAAGCGCACCCGATATAGGGCGGCCCACGCCATCGCGCC
CTGAGCCAAAAGAGCAAAGAGATGTACTGCTGTAACGTGTTGTGTACTGT
TGTGCCCTCCTCGACCCCAACTGTCGTTTCCCCCACCCGACCCCGATGCC
ATAGGGACGATTTTCTGAGAAACGTAGATAAGCAACACGTTTCGGCGGTC
CTCGTAGAAGGAAACGCAATACGCTGTAGTCTACACTACTCCTGTCGTGT
GGTAGTCTGATTTGCACCATAGACACACATGTTCACTGCCGGTATTTAAC
TTTTCAGACTCTGAGAAAAAAGGCACATCTTTCCAGGCCCCAGCATAATT
AATACTTGATTGGAGGGCTTGTTTCTCGGCCAGTCCCGAAAGTAGTTGCT
GCTGTGATCCGCGTGATCTGCTTCATATAAATCACTTAATTCCTGGAATG
TGCTGCGTTGCACTGAGACTCTGTGCACGCCCGCGTTACTGCGGTGAGCT
CGTCGGTGGGGTTTGTTGTTGGAATGGTGTCGAGCTGAACCGAGGCGAAA
CCTGAATACTTCCGTGTCTTTCAGAGGAATGCCGAACAAAGCGGGGTGGA
AGTGGTGGGCTTGCATGTACAATTGTATACCACTCTGTTCGGAAGTATGA
GGACCATTCGGGTACTATGGTGATTGTCCCAATGATCCTATGTACCGTGA
TCCCTATATTTCCGGACAAGTGGCACACGCGGACTAACCGCCCTCCGCTG
TGCGCAATACTTGCTGGTGCTCGTATCGTAACCGCTTGCTATGTCGCCAC
TCCTGCGACGATTTTGCAGGTGCGTATTCGAACGTATCCTCGACGCCGCC
TTCCGGCGAGAGGGAAACCCACGCGGCGTCGCCACCCGTAGCCACGGAAG
TCCCACCAGCGCGCCAGGACAGCAAGCGCCGCCGCCGAAGAACGACAAGA
AGTAGCAGCCCCGTCACGCAACATGCTACGAGCGCAGGCGGCAGCGCTTC
CACGAAAGGACCGGGGCGAGGAGCTGGTCGAAGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10862:2318..3904+

>mRNA_Ecto-sp13_S_contig10862.771.1 ID=mRNA_Ecto-sp13_S_contig10862.771.1|Name=mRNA_Ecto-sp13_S_contig10862.771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10862:2318..3904+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCGCCCATGCTCCTTCGCATCCTTTGTGTCTACCACTGGAAGCAG
CGCTGAGACCACCCAAAGACATCTGCAATGGCTTCCCCAGTGTTTGCCAC
GAAGGAGGCAGAGGATAGCCGCGTCGAGGAGGCGACGTCTCATGTCACCA
CAGGTTGCGAGAGGTTCCGCCGCACCTGCTGAGGAGCCGGATGATGCTGC
AACAGCAGCGGCAGCAGCGGCAGCAGCGGCAGCGGCCGTGTTCCGGCAGC
TGGATGCTGGCTTGGAAAGTGATGAAGAGGACGATGCGATGGTGTTCGGC
ATCAAAGGTGCGTATTCGAACGTATCCTCGACGCCGCCTTCCGGCGAGAG
GGAAACCCACGCGGCGTCGCCACCCGTAGCCACGGAAGTCCCACCAGCGC
GCCAGGACAGCAAGCGCCGCCGCCGAAGAACGACAAGAAGTAGCAGCCCC
GTCACGCAACATGCTACGAGCGCAGGCGGCAGCGCTTCCACGAAAGGACC
GGGGCGAGGAGCTGGTCGAAGGGAG
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