mRNA_Ecto-sp13_S_contig10857.765.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10857.765.1
Unique NamemRNA_Ecto-sp13_S_contig10857.765.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10857.765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10857contigEcto-sp13_S_contig10857:1808..2962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size240
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_002080.1
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462559.341339-CDS-Ecto-sp13_S_contig10857:1807..19831681462559.341339-CDS-Ecto-sp13_S_contig10857:1807..1983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10857 1808..1983 -
1681462559.351366-CDS-Ecto-sp13_S_contig10857:2898..29621681462559.351366-CDS-Ecto-sp13_S_contig10857:2898..2962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10857 2899..2962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10857.765.1prot_Ecto-sp13_S_contig10857.765.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10857 1808..2962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10857.765.1

>prot_Ecto-sp13_S_contig10857.765.1 ID=prot_Ecto-sp13_S_contig10857.765.1|Name=mRNA_Ecto-sp13_S_contig10857.765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
MRHSAIRLHHRHSSGPWRRLEGECSTMTSQETSMKDGMETGVASGSGTAE
GFARQGCDDGRRLSLQHGGQADGKASWVVA
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mRNA from alignment at Ecto-sp13_S_contig10857:1808..2962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10857.765.1 ID=mRNA_Ecto-sp13_S_contig10857.765.1|Name=mRNA_Ecto-sp13_S_contig10857.765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1155bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10857:1808..2962- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCACTCCGCCATCCGTCTTCACCATCGACACAGCAGTGGACCGTG
GAGGAGATTGGAAGGTGAGCGTGTAGTCCGGCACGTCCCCCCGTGCTGGG
TAACCTTAGAAGGGCGAGCGTCTTCGAGTACATAAGAGATAACTCGGCTC
AACTTTTTTGTGAGAATTTCTACGAAGTGCGCATGGTACGGGTTGCCGCT
GGCGCTGCGGATTGAAAGGACGGATGCATAAAAAGTAGAGAGAGATGAGC
ACCTCACCTAGTCCTGAAGCAGTAGCAGATGCATGTCATAGCAACAGTGT
CGCTGGCGCTGAACCTAACTATTCCGTCGCACAAGAGAAAACGCACGTCT
TCGTGCAACATCCTTCCAACGAACACATACCGCCGTGTGTTGTGCCGCAA
AATCGGTGTTTGGGTATGTACTCGTAGCGCTCGCGACGACAAGCCTCTGC
TCTCCCTCCATCTCTATCTAGCCTGGGCGTTGATCGGGTAAGCTGGTGGA
CATCCTGTTTCTCTGCTAGCTCTGTCTAGCTCTCGTCATCAAGTATAGCC
GGCACAATCCAACGAAGCACGGGTTGTGTGAGAATATATTTTTCACAAGC
ACCAGTTTTATCCGACGGCCTGTTCTCGAAAATCACACTGCGTAACACAA
GAACAACGACAAGTATGAGCAGGGAGTCTTTCTGTGCGTGTATTTATTTT
CTCCTTAATAAATACAATATCCTACCCCAAGGCTTTCTGTCTAAATTTTT
GGATGTACCTACTAACGTACAGCAGTTCGGGAGGGATGTGTTGCAGTTCC
TACAGCATTATTGTGGAGAGTAGGATGTGGCCTGTTCATTCAAAATCCGT
GCTAGAGGCCTGTTTAGTGTTGAACGCAGTCTCTGTCTCTGTCTCACACT
CTCTGACTCTGACACGCGAATCACTTGTGTGTGACCTCCCTCCTTCTGTA
CACATTTAATTATGTTTAACATATGTTAGGCGAGTGCTCTACGATGACGT
CACAGGAGACGTCTATGAAAGACGGAATGGAAACCGGCGTAGCTTCGGGC
TCAGGCACTGCGGAAGGTTTTGCGCGCCAGGGGTGCGACGATGGCCGGCG
GCTCAGTCTCCAGCACGGCGGCCAGGCGGACGGGAAGGCGAGTTGGGTTG
TTGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10857:1808..2962-

>mRNA_Ecto-sp13_S_contig10857.765.1 ID=mRNA_Ecto-sp13_S_contig10857.765.1|Name=mRNA_Ecto-sp13_S_contig10857.765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10857:1808..2962- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCACTCCGCCATCCGTCTTCACCATCGACACAGCAGTGGACCGTG
GAGGAGATTGGAAGGCGAGTGCTCTACGATGACGTCACAGGAGACGTCTA
TGAAAGACGGAATGGAAACCGGCGTAGCTTCGGGCTCAGGCACTGCGGAA
GGTTTTGCGCGCCAGGGGTGCGACGATGGCCGGCGGCTCAGTCTCCAGCA
CGGCGGCCAGGCGGACGGGAAGGCGAGTTGGGTTGTTGCT
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