mRNA_Ecto-sp13_S_contig10856.763.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A6H5KNE7_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNE7_9PHAE) HSP 1 Score: 428 bits (1100), Expect = 7.620e-138 Identity = 245/284 (86.27%), Postives = 252/284 (88.73%), Query Frame = -3
Query: 1 MPGDAVMHVSSPPSFRTRLAPQAPTHGGGSYRYASAPRRSDRSYRDTRDSCCGARSPVGAPAAGQPREAASPXXXXXXXXXXXXXXXXLALASEPTIEKMVPISTTPWSGHDDERGTSREEQQPEGATMAAARGSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVRRDSGGYSATTAAAETN-PSGSSGKRGAASTAFELYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRGTNK 849
MPGDAVMH SSPPSFR LAPQA T GG S+RYASA RRSD SYRDTRDS CGARS V A AAGQ XXXXXXXXXXXXXX LALASEPTIE+MVPIS TPWSGHD+ERG ++E QQ +GATMA A GSRVDAAL+SRGALRSGYLWKLG NVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVRRDSGGYSATTAAAETN SG SGKRGAASTAFELYRSG PDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRGTNK
Sbjct: 1 MPGDAVMHASSPPSFRACLAPQALTRGGSSHRYASARRRSDLSYRDTRDSFCGARSSVAA-AAGQRXXXXXXXXXXXXXXXXXXXXEALALASEPTIEEMVPISNTPWSGHDNERGATQEGQQQQGATMATAGGSRVDAALISRGALRSGYLWKLGVNVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVRRDSGGYSATTAAAETNNTSGGSGKRGAASTAFELYRSGYPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRGTNK 283
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: D8LHG6_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG6_ECTSI) HSP 1 Score: 335 bits (860), Expect = 1.480e-103 Identity = 171/185 (92.43%), Postives = 177/185 (95.68%), Query Frame = -3
Query: 1 MVPISTTPWSGHDDERGTSREEQQPEGATMAAARGSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVRRDSGGYSATTAAAETN-PSGSSGKRGAASTAFELYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRGTNK 552
MVPISTTPWSGHDD+RG +++EQQ EGATMAAA GSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVR+DSGGYSATTAAA+TN SG SGKRGA STAFELYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRG NK
Sbjct: 1 MVPISTTPWSGHDDDRGPAQKEQQ-EGATMAAAGGSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVRKDSGGYSATTAAADTNNTSGGSGKRGATSTAFELYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRGANK 184
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S4HTX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HTX3_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 5.760e-13 Identity = 57/161 (35.40%), Postives = 79/161 (49.07%), Query Frame = -3
Query: 13 AALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDL--FDAVREVRRDSGGYSATTAAAETNPSG---------SSGKRGAASTAFELYRSGCPDGSG---------FMLEARGGEDWEQWVESIANGRHGKLQAEMDVMR 435
AA +R A R+GYL KLG NV ++KRRFFVL+P T L+Y++ +D EPRGCI+LD AVRE+ ET P G G G A + S DG +LEAR E +W++S+ + ++AE++ R
Sbjct: 12 AADFARTAPRAGYLHKLGTNVRQYKRRFFVLRPSTHLYYFLGPNDAEPRGCIELDGGGVSAVREL--------------ETMPDGRFRFEISLGGDGGEGDAGGMDASFASANDDGXXXXXXXGPRRIVLEARSAECGREWIDSLRSESLPYVRAELESSR 158
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S2E8R1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E8R1_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 9.190e-13 Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = -3
Query: 16 GSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDA---VREVRRDSGGYSATTAAAETNPSGSSGKRGAASTAFE-LYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVM 450
G AA +R A ++G+L KLG N+ ++KRRFFVLKP T L+Y++S D+EPRGCIDLD + +REV G +G + ST + L R+ P MLEAR E +W+ I R ++++D +
Sbjct: 37 GGAETAAAFARSAPKAGFLSKLGKNIHQYKRRFFVLKPTTHLYYFVSPTDSEPRGCIDLDCLSSTTTLREVETLPDGRFRFEIIIADRENGVYDEGTHVSTDLDGLERTDNPHVQRIMLEARNEEVGREWMSMIDKERLSCARSDIDTL 185
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S4EE23_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EE23_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 2.460e-12 Identity = 53/148 (35.81%), Postives = 78/148 (52.70%), Query Frame = -3
Query: 13 GSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAV--REVRRDSGGYSATTAAAETNPSGSSGKRGAASTAFELYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMR 450
G + AA ++R ++++GYL LG N +WKRRFFVLKP TML+Y+ S+ D EP GC+D++ F +V REV +D T A P G A A L F L A G + W++++ + +L+ +VMR
Sbjct: 22 GGQPYAARLARASVKAGYLHGLGEN-HQWKRRFFVLKPTTMLYYFGSDADEEPLGCVDVEAFTSVSCREVHQDG---RVTIELARAAPPG-------ADNAKPLI---------FSLRAPGESEGYGWIDALKGSSYARLKEANEVMR 149
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S4ULH5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4ULH5_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 5.800e-12 Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = -3
Query: 16 GSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDA---VREVRRDSGGYSATTAAAETNPSGSSGKRGAASTAFE-LYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVM 450
G AA +R A ++G+L KLG N+ ++KRRFFVLKP T L+Y++S D+EPRGCIDLD + +REV G +G + ST + L R+ P +LEAR E +W+ I R ++++D +
Sbjct: 178 GGAETAAAFARSAPKAGFLSKLGKNIHQYKRRFFVLKPTTHLYYFVSPTDSEPRGCIDLDCLSSTTTLREVETLPDGRFRFEIIIADRENGVYDEGTHVSTDLDGLERTDNPHVQRIILEARNEEVGREWMSMIDKERLSCARSDIDTL 326
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: B5YML0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YML0_THAPS) HSP 1 Score: 76.3 bits (186), Expect = 1.130e-11 Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = -3
Query: 268 SRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDL 423
+R A SGYL KLG N+P +KRRFFVLKP T L+Y+MS D EPRGCIDLDL
Sbjct: 156 ARSAPLSGYLRKLGKNIPTFKRRFFVLKPSTHLYYFMSPTDVEPRGCIDLDL 207
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S1FPN9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FPN9_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.430e-11 Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = -3
Query: 247 RSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDA-VREV 408
++GYL+KLG+N+ +KRRFFVLKP T L+Y++S +DTEPRGCIDL+ A VRE+
Sbjct: 25 QAGYLYKLGSNIQNYKRRFFVLKPATHLYYFLSPNDTEPRGCIDLENSSATVREL 79
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S1FPI5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FPI5_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.960e-11 Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = -3
Query: 247 RSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDA-VREV 408
++GYL+KLG+N+ +KRRFFVLKP T L+Y++S +DTEPRGCIDL+ A VRE+
Sbjct: 25 QAGYLYKLGSNIQNYKRRFFVLKPATHLYYFLSPNDTEPRGCIDLENSSATVREL 79
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S3Q480_9STRA (Hypothetical protein n=3 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q480_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 2.950e-11 Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = -3
Query: 262 SRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFD 447
S + AA +R A ++GYL KLG +V ++KRRFFVLKP T L+Y++ D EPRGCIDLDL D
Sbjct: 520 SSITAASFARHAPKAGYLSKLGGSVSEYKRRFFVLKPTTCLYYFLDPSDEEPRGCIDLDLDD 581 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10856.763.1 >prot_Ecto-sp13_S_contig10856.763.1 ID=prot_Ecto-sp13_S_contig10856.763.1|Name=mRNA_Ecto-sp13_S_contig10856.763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp LVGPSHHVHLGLQLSVPAVRDGLHPLLPVLATSRLQHEPAAVRAAGAVQLback to top mRNA from alignment at Ecto-sp13_S_contig10856:556..1481+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10856.763.1 ID=mRNA_Ecto-sp13_S_contig10856.763.1|Name=mRNA_Ecto-sp13_S_contig10856.763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=926bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10856:556..1481+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10856:556..1481+ >mRNA_Ecto-sp13_S_contig10856.763.1 ID=mRNA_Ecto-sp13_S_contig10856.763.1|Name=mRNA_Ecto-sp13_S_contig10856.763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10856:556..1481+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |