mRNA_Ecto-sp13_S_contig10856.763.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10856.763.1
Unique NamemRNA_Ecto-sp13_S_contig10856.763.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A6H5KNE7_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNE7_9PHAE)

HSP 1 Score: 428 bits (1100), Expect = 7.620e-138
Identity = 245/284 (86.27%), Postives = 252/284 (88.73%), Query Frame = -3
Query:    1 MPGDAVMHVSSPPSFRTRLAPQAPTHGGGSYRYASAPRRSDRSYRDTRDSCCGARSPVGAPAAGQPREAASPXXXXXXXXXXXXXXXXLALASEPTIEKMVPISTTPWSGHDDERGTSREEQQPEGATMAAARGSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVRRDSGGYSATTAAAETN-PSGSSGKRGAASTAFELYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRGTNK 849
            MPGDAVMH SSPPSFR  LAPQA T GG S+RYASA RRSD SYRDTRDS CGARS V A AAGQ       XXXXXXXXXXXXXX  LALASEPTIE+MVPIS TPWSGHD+ERG ++E QQ +GATMA A GSRVDAAL+SRGALRSGYLWKLG NVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVRRDSGGYSATTAAAETN  SG SGKRGAASTAFELYRSG PDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRGTNK
Sbjct:    1 MPGDAVMHASSPPSFRACLAPQALTRGGSSHRYASARRRSDLSYRDTRDSFCGARSSVAA-AAGQRXXXXXXXXXXXXXXXXXXXXEALALASEPTIEEMVPISNTPWSGHDNERGATQEGQQQQGATMATAGGSRVDAALISRGALRSGYLWKLGVNVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVRRDSGGYSATTAAAETNNTSGGSGKRGAASTAFELYRSGYPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRGTNK 283          
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: D8LHG6_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG6_ECTSI)

HSP 1 Score: 335 bits (860), Expect = 1.480e-103
Identity = 171/185 (92.43%), Postives = 177/185 (95.68%), Query Frame = -3
Query:    1 MVPISTTPWSGHDDERGTSREEQQPEGATMAAARGSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVRRDSGGYSATTAAAETN-PSGSSGKRGAASTAFELYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRGTNK 552
            MVPISTTPWSGHDD+RG +++EQQ EGATMAAA GSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVR+DSGGYSATTAAA+TN  SG SGKRGA STAFELYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRG NK
Sbjct:    1 MVPISTTPWSGHDDDRGPAQKEQQ-EGATMAAAGGSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVRKDSGGYSATTAAADTNNTSGGSGKRGATSTAFELYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRGANK 184          
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S4HTX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HTX3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.760e-13
Identity = 57/161 (35.40%), Postives = 79/161 (49.07%), Query Frame = -3
Query:   13 AALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDL--FDAVREVRRDSGGYSATTAAAETNPSG---------SSGKRGAASTAFELYRSGCPDGSG---------FMLEARGGEDWEQWVESIANGRHGKLQAEMDVMR 435
            AA  +R A R+GYL KLG NV ++KRRFFVL+P T L+Y++  +D EPRGCI+LD     AVRE+              ET P G           G  G A      + S   DG            +LEAR  E   +W++S+ +     ++AE++  R
Sbjct:   12 AADFARTAPRAGYLHKLGTNVRQYKRRFFVLRPSTHLYYFLGPNDAEPRGCIELDGGGVSAVREL--------------ETMPDGRFRFEISLGGDGGEGDAGGMDASFASANDDGXXXXXXXGPRRIVLEARSAECGREWIDSLRSESLPYVRAELESSR 158          
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S2E8R1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E8R1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 9.190e-13
Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = -3
Query:   16 GSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDA---VREVRRDSGGYSATTAAAETNPSGSSGKRGAASTAFE-LYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVM 450
            G    AA  +R A ++G+L KLG N+ ++KRRFFVLKP T L+Y++S  D+EPRGCIDLD   +   +REV     G            +G   +    ST  + L R+  P     MLEAR  E   +W+  I   R    ++++D +
Sbjct:   37 GGAETAAAFARSAPKAGFLSKLGKNIHQYKRRFFVLKPTTHLYYFVSPTDSEPRGCIDLDCLSSTTTLREVETLPDGRFRFEIIIADRENGVYDEGTHVSTDLDGLERTDNPHVQRIMLEARNEEVGREWMSMIDKERLSCARSDIDTL 185          
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S4EE23_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EE23_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.460e-12
Identity = 53/148 (35.81%), Postives = 78/148 (52.70%), Query Frame = -3
Query:   13 GSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAV--REVRRDSGGYSATTAAAETNPSGSSGKRGAASTAFELYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMR 450
            G +  AA ++R ++++GYL  LG N  +WKRRFFVLKP TML+Y+ S+ D EP GC+D++ F +V  REV +D      T   A   P G       A  A  L          F L A G  +   W++++    + +L+   +VMR
Sbjct:   22 GGQPYAARLARASVKAGYLHGLGEN-HQWKRRFFVLKPTTMLYYFGSDADEEPLGCVDVEAFTSVSCREVHQDG---RVTIELARAAPPG-------ADNAKPLI---------FSLRAPGESEGYGWIDALKGSSYARLKEANEVMR 149          
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S4ULH5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4ULH5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.800e-12
Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = -3
Query:   16 GSRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDA---VREVRRDSGGYSATTAAAETNPSGSSGKRGAASTAFE-LYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVM 450
            G    AA  +R A ++G+L KLG N+ ++KRRFFVLKP T L+Y++S  D+EPRGCIDLD   +   +REV     G            +G   +    ST  + L R+  P     +LEAR  E   +W+  I   R    ++++D +
Sbjct:  178 GGAETAAAFARSAPKAGFLSKLGKNIHQYKRRFFVLKPTTHLYYFVSPTDSEPRGCIDLDCLSSTTTLREVETLPDGRFRFEIIIADRENGVYDEGTHVSTDLDGLERTDNPHVQRIILEARNEEVGREWMSMIDKERLSCARSDIDTL 326          
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: B5YML0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YML0_THAPS)

HSP 1 Score: 76.3 bits (186), Expect = 1.130e-11
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = -3
Query:  268 SRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDL 423
            +R A  SGYL KLG N+P +KRRFFVLKP T L+Y+MS  D EPRGCIDLDL
Sbjct:  156 ARSAPLSGYLRKLGKNIPTFKRRFFVLKPSTHLYYFMSPTDVEPRGCIDLDL 207          
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S1FPN9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FPN9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.430e-11
Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = -3
Query:  247 RSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDA-VREV 408
            ++GYL+KLG+N+  +KRRFFVLKP T L+Y++S +DTEPRGCIDL+   A VRE+
Sbjct:   25 QAGYLYKLGSNIQNYKRRFFVLKPATHLYYFLSPNDTEPRGCIDLENSSATVREL 79          
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S1FPI5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FPI5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.960e-11
Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = -3
Query:  247 RSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDA-VREV 408
            ++GYL+KLG+N+  +KRRFFVLKP T L+Y++S +DTEPRGCIDL+   A VRE+
Sbjct:   25 QAGYLYKLGSNIQNYKRRFFVLKPATHLYYFLSPNDTEPRGCIDLENSSATVREL 79          
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Match: A0A7S3Q480_9STRA (Hypothetical protein n=3 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q480_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.950e-11
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = -3
Query:  262 SRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFD 447
            S + AA  +R A ++GYL KLG +V ++KRRFFVLKP T L+Y++   D EPRGCIDLDL D
Sbjct:  520 SSITAASFARHAPKAGYLSKLGGSVSEYKRRFFVLKPTTCLYYFLDPSDEEPRGCIDLDLDD 581          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10856.763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KNE7_9PHAE7.620e-13886.27PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LHG6_ECTSI1.480e-10392.43PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A7S4HTX3_9STRA5.760e-1335.40Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2E8R1_9STRA9.190e-1336.24Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S4EE23_9STRA2.460e-1235.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4ULH5_9STRA5.800e-1235.57Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
B5YML0_THAPS1.130e-1169.23Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S1FPN9_9STRA1.430e-1161.82Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1FPI5_9STRA1.960e-1161.82Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3Q480_9STRA2.950e-1158.06Hypothetical protein n=3 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10856contigEcto-sp13_S_contig10856:556..1481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size926
Hectar predicted targeting categoryother localisation
Exons1
Cds size585
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462559.221867-CDS-Ecto-sp13_S_contig10856:555..11401681462559.221867-CDS-Ecto-sp13_S_contig10856:555..1140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10856 556..1140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462559.2321131-UTR-Ecto-sp13_S_contig10856:1140..14811681462559.2321131-UTR-Ecto-sp13_S_contig10856:1140..1481Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10856 1141..1481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10856.763.1prot_Ecto-sp13_S_contig10856.763.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10856 556..1140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10856.763.1

>prot_Ecto-sp13_S_contig10856.763.1 ID=prot_Ecto-sp13_S_contig10856.763.1|Name=mRNA_Ecto-sp13_S_contig10856.763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp
LVGPSHHVHLGLQLSVPAVRDGLHPLLPVLATSRLQHEPAAVRAAGAVQL
ECRARGPPLAAATARVGLGGGCRCGVTTGVSAHLSHGVEEVEVNTPARLG
VVLGHVVEEHRDGLEHEEAPLPLGHVGPQLPEVPAPKRSSRDKRGIHPAS
SRRRHGCAFWLLLLATSTSLVVVAAPWSSRYRDHLLYRWLRREG*
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mRNA from alignment at Ecto-sp13_S_contig10856:556..1481+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10856.763.1 ID=mRNA_Ecto-sp13_S_contig10856.763.1|Name=mRNA_Ecto-sp13_S_contig10856.763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=926bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10856:556..1481+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTTGGTCCCTCTCATCACGTCCATCTCGGCTTGCAGCTTTCCGTGCC TGCCGTTCGCGATGGACTCCACCCACTGCTCCCAGTCCTCGCCACCTCTC GCCTCCAGCATGAACCCGCTGCCGTCCGGGCAGCCGGAGCGGTACAGCTC GAATGCCGTGCTCGCGGCCCCCCTCTTGCCGCTGCTACCGCTAGGGTTGG TCTCGGCGGCGGCTGTCGTTGCGGAGTAACCACCGGAGTCTCTGCGCACC TCTCGCACGGCGTCGAAGAGGTCGAGGTCAATACACCCGCGAGGCTCGGT GTCGTGCTCGGACATGTAGTAGAAGAGCATCGTGATGGGCTTGAGCACGA AGAAGCGCCGCTTCCACTTGGGCACGTTGGCCCCCAGCTTCCAGAGGTAC CCGCTCCGAAGCGCTCCTCTCGAGACAAGCGCGGCATCCACCCTGCTTCC TCGCGCCGCCGCCATGGTTGCGCCTTCTGGCTGCTGCTCCTCGCGACTAG TACCTCGCTCGTCGTCGTGGCCGCTCCATGGAGTAGTCGATATCGGGACC ATCTTCTCTATCGTTGGCTCCGACGCGAGGGCTAGCGCTTCTGCCGCGGC TGCCGCACGGCTACCATCCGCTGCTGCTGCTCGGGGTGATGCTGCTTCCC TCGGCTGACCAGCAGCGGGAGCACCAACGGGTGACCGTGCGCCGCAGCAG CTGTCTCGGGTATCACGGTAGCTGCGATCACTTCTCCTCGGTGCCGATGC GTAACGGTAGCTGCCGCCGCCGTGGGTGGGCGCCTGAGGTGCAAGGCGAG TACGGAACGATGGTGGACTGCTGACGTGCATCACTGCATCGCCAGGCATC ACTGCACTACTAACCAGCACGTTTTTTCGGGGATCGTTGTGCTACTGGTG CGAGTTGAGAGAGCAACGACATCAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10856:556..1481+

>mRNA_Ecto-sp13_S_contig10856.763.1 ID=mRNA_Ecto-sp13_S_contig10856.763.1|Name=mRNA_Ecto-sp13_S_contig10856.763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10856:556..1481+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTTGGTCCCTCTCATCACGTCCATCTCGGCTTGCAGCTTTCCGTGCC
TGCCGTTCGCGATGGACTCCACCCACTGCTCCCAGTCCTCGCCACCTCTC
GCCTCCAGCATGAACCCGCTGCCGTCCGGGCAGCCGGAGCGGTACAGCTC
GAATGCCGTGCTCGCGGCCCCCCTCTTGCCGCTGCTACCGCTAGGGTTGG
TCTCGGCGGCGGCTGTCGTTGCGGAGTAACCACCGGAGTCTCTGCGCACC
TCTCGCACGGCGTCGAAGAGGTCGAGGTCAATACACCCGCGAGGCTCGGT
GTCGTGCTCGGACATGTAGTAGAAGAGCATCGTGATGGGCTTGAGCACGA
AGAAGCGCCGCTTCCACTTGGGCACGTTGGCCCCCAGCTTCCAGAGGTAC
CCGCTCCGAAGCGCTCCTCTCGAGACAAGCGCGGCATCCACCCTGCTTCC
TCGCGCCGCCGCCATGGTTGCGCCTTCTGGCTGCTGCTCCTCGCGACTAG
TACCTCGCTCGTCGTCGTGGCCGCTCCATGGAGTAGTCGATATCGGGACC
ATCTTCTCTATCGTTGGCTCCGACGCGAGGGCTAG
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