mRNA_Ecto-sp13_S_contig1085.759.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1085.759.1
Unique NamemRNA_Ecto-sp13_S_contig1085.759.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1085.759.1 vs. uniprot
Match: A0A6H5KBK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK6_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 5.630e-5
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 3 
Query:   63 APAGGNARNMGLRQKGDPG--PDATGGRYNSKSQRCSGGGQGKGKVDRDPRK 212
            APAGGNARNM LR+  +PG  P  TG      +   S GG+GKGK DRDPRK
Sbjct:   78 APAGGNARNMSLREDSNPGRTPPVTG-----ITASASDGGKGKGKADRDPRK 124
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1085.759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBK6_9PHAE5.630e-557.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1085contigEcto-sp13_S_contig1085:3972..5755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size240
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462558.9542286-CDS-Ecto-sp13_S_contig1085:3971..40331681462558.9542286-CDS-Ecto-sp13_S_contig1085:3971..4033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1085 3972..4033 +
1681462558.966045-CDS-Ecto-sp13_S_contig1085:5577..57101681462558.966045-CDS-Ecto-sp13_S_contig1085:5577..5710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1085 5578..5710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462558.982722-UTR-Ecto-sp13_S_contig1085:5710..57551681462558.982722-UTR-Ecto-sp13_S_contig1085:5710..5755Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1085 5711..5755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1085.759.1prot_Ecto-sp13_S_contig1085.759.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1085 3972..5710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1085.759.1

>prot_Ecto-sp13_S_contig1085.759.1 ID=prot_Ecto-sp13_S_contig1085.759.1|Name=mRNA_Ecto-sp13_S_contig1085.759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
MKRCIASAQATGNHAILVRNQHQQAGTRETWAYDRRATPGRTPPVADTTA
RASDAAAVGKEKAR*
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mRNA from alignment at Ecto-sp13_S_contig1085:3972..5755+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1085.759.1 ID=mRNA_Ecto-sp13_S_contig1085.759.1|Name=mRNA_Ecto-sp13_S_contig1085.759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1784bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1085:3972..5755+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCGCTGCATTGCGTCAGCTCAAGCGACAGGGAACCACGCGATTCT
CGTCAGGAATCAGTGTTCGCCCTGCACGGTGAGGCACACGTCCAATAGCG
AAATCGTCTCGATACGTGTGGGTACACAACAATTTGATGTAGCGTTTCGG
ACGGGTCCCGTATAGCCCGTACCACTGAGAAGCAAGACACCCTGCCCTTC
TTCGATCTTTTGCAGCAACGTTGACTGTCATTATCGCTTTGGAACGTGTG
CAGTAGGCCCTTGATTTCGCACCCAGTCACCGATGAGACAGGCATTGCGG
AGGGTACCAGCAAGGAAATGGCCGCGCGTATCCACGCGCGTTGTCTTCCT
TGCCATTGGCTGCCCCGCTTTGGTCGGGATAGGACGACAGCTGTAATTTT
TTCTCGACGGAGGAAGTGCAGGGTGCATGTGGTGCTGTAGGTTTGGCTGT
TGCAGAGTTCAGGGGGTCGTTTTGGCCAGGGAATGCTTTTCCCCTTTCTG
GAACCAGCACCTGGGGTTGAGTACAAGATGTTGTACAGGCATCGTCCTTT
TCACGTCGGTGTTCACCAAACCTAACACCTTACCCACTTGTGACTTACAC
AGAACACCTCGCTGAAGCAATTACCATTTGCTGTGGCACAGATGGCCATA
GAAACCATGCAGCTTGCGGGATGGCGCGCGAAATCATCAAAGAAGTTACA
ACTGCTAAGAATTTTGAGGTCGAATGCTACCCGTTGCCTACAGCGTGTAG
ACTAACTTTACGACAGTCAAGTGTGGTTGAATGCATACAGCTGCCGAGGG
CTATTTTTTTTTTACTTCGTGAGACCTGCTGGTTTTTGTACCATTGGCGA
TAGATTCCAGTGCTCAAGCTGGTCGCTTATCAAACAGCAAAAGCCCGACT
GTTGACACCGCTGCGTCCAATGGCGGATGCAGGCAGCCCACCGCAAGAAG
TCAATCACGCTTTTTAAGGGCGAGGCCATGGTGGAGTCGGAAATAGGGGC
GATGAATAGCAGGATTCATTACGTACAGACCAAGCGGGCCGCGGCACTCG
AAGCCCGCGCCGCCGTGCGAGCCACCCACACACAAGATCCAAGAGCAGAC
TTCAAGGCAAGTGGAATTACCTTTCGTAGCTGGGAGCTTCGACCGTGTGG
TCGTTTGTTAGATATGTTTTTTTTTTTCCTGGGTTCCCCAGTCAACCTTA
CCACGGGATGAAGAGGTCAGCATCGTAACATGGGTAGCGAGTGTCGCTAG
AATCCCGAACAGTTGGGAACTCTCGGCGCGATGTGTGAGGTAACGGTGAT
TTGGCTTGCAGCCTGTGGGTTTAATCTAGTGGCACCTCCTAGATGCCCAT
CTATCGGCAAGATTGGTTGATCTCTTCGTTTCTGTCGATGCGAGCATGCG
AACATGGTCGCATCAAACACCCCTCATCCCAACTGATCACCACAAGGTCA
CGTTCTTCGTGCGCAACATTATCCCGCCAGAACACGATCGGCTTCTAAGT
GCATCTTCGCGTCCTCGTGGTGTTTCGTTCACGGGCGGATTACACCCCTA
CCTACCTTTTCCTACCTTACGTGGGCTTGCCTTCTTGCATGGACTTCTGG
TTGCAGGCACCAGCAGGCGGGAACGCGCGAAACATGGGCTTACGACAGAA
GGGCGACCCCGGGCCGGACGCCACCGGTGGCAGATACAACAGCAAGAGCC
AGCGATGCAGCGGCGGTGGGCAAGGAAAAGGCAAGGTAGATCGCGACCCT
CGGAAGTGAGCTCGAGGTCACCACCCGACTCCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1085:3972..5755+

>mRNA_Ecto-sp13_S_contig1085.759.1 ID=mRNA_Ecto-sp13_S_contig1085.759.1|Name=mRNA_Ecto-sp13_S_contig1085.759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1085:3972..5755+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCGCTGCATTGCGTCAGCTCAAGCGACAGGGAACCACGCGATTCT
CGTCAGGAATCAGCACCAGCAGGCGGGAACGCGCGAAACATGGGCTTACG
ACAGAAGGGCGACCCCGGGCCGGACGCCACCGGTGGCAGATACAACAGCA
AGAGCCAGCGATGCAGCGGCGGTGGGCAAGGAAAAGGCAAGGTAG
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