mRNA_Ecto-sp13_S_contig1085.758.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1085.758.1
Unique NamemRNA_Ecto-sp13_S_contig1085.758.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1085.758.1 vs. uniprot
Match: D7FWY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY1_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 9.200e-38
Identity = 67/80 (83.75%), Postives = 70/80 (87.50%), Query Frame = 3 
Query:  273 SGNCWPGCHDQENDADAMATFLRDVVLREVEDMKGSWTPTPEDRSNPDSGEVSIGITEEHGGVFKALERSLASGRARDQG 512
            SG CW G  DQE DADAMATFLRDVVLREVE +KGSWTPTPEDRSNPDSGEVS+GITE+HG VFK LERSL S RARDQG
Sbjct:   92 SGCCWLGYLDQEKDADAMATFLRDVVLREVEGIKGSWTPTPEDRSNPDSGEVSMGITEKHGSVFKVLERSLVSARARDQG 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1085.758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWY1_ECTSI9.200e-3883.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1085contigEcto-sp13_S_contig1085:753..1965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size512
Hectar predicted targeting categorymitochondrion
Exons3
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462558.8901796-CDS-Ecto-sp13_S_contig1085:752..8691681462558.8901796-CDS-Ecto-sp13_S_contig1085:752..869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1085 753..869 +
1681462558.9013078-CDS-Ecto-sp13_S_contig1085:1338..15841681462558.9013078-CDS-Ecto-sp13_S_contig1085:1338..1584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1085 1339..1584 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462558.9098477-UTR-Ecto-sp13_S_contig1085:1584..16881681462558.9098477-UTR-Ecto-sp13_S_contig1085:1584..1688Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1085 1585..1688 +
1681462558.9188328-UTR-Ecto-sp13_S_contig1085:1920..19651681462558.9188328-UTR-Ecto-sp13_S_contig1085:1920..1965Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1085 1921..1965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1085.758.1prot_Ecto-sp13_S_contig1085.758.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1085 753..1584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1085.758.1

>prot_Ecto-sp13_S_contig1085.758.1 ID=prot_Ecto-sp13_S_contig1085.758.1|Name=mRNA_Ecto-sp13_S_contig1085.758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MRWSFMTWSKEWPRALACSTYRVRQIWRRGVIWTSTVRTAMRPTRKRMGL
GRKSKRNPVHVQPVQEFRGEDTRRTEDTTTRTHGRSRLPLVRETAGQVAT
TKRMTPMQWPPSCVTLCFAR*
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mRNA from alignment at Ecto-sp13_S_contig1085:753..1965+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1085.758.1 ID=mRNA_Ecto-sp13_S_contig1085.758.1|Name=mRNA_Ecto-sp13_S_contig1085.758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1085:753..1965+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGTGGAGTTTTATGACGTGGTCAAAGGAATGGCCGAGGGCGCTGGC
CTGCTCTACCTATCGTGTCCGCCAGATCTGGAGGAGAGGGGTGATTTGGA
CGAGTACAGTGAGGACGGTAAGCACTTGCGCTTTTTTCTTTTGGCTACGA
CCCCCTCCACGGGACGCCTTTGTTGCGAGAAAATAAGTTGAGGAGGAACT
ACAACAGGGAGGGGGTACTCAGACCCTATCCCCTAACCCTAATCCAACTT
CCCCGATTGCATGCTTTGTCCAAAATGTGCTTGCCTCATACCAAAACCTA
CGAAGGCTTTTGCCCCCACGCATTCCGGCGACTTTGCCGCAGTTGTTTTG
ATTGTTGTGTTGCCGCTGTCCTTCGTTGCTGCTGCCTTCGCCGATGATGA
TTCGTCCAAACGTATGAATACGTCAATATGTTCCGAAACTTGTAAACGCG
GGTTTGAGCTGTCCCTCATCTGCCGGCGAGCAACACCGAAATACGCACGG
TGACTCCAATAATCACCAAGCGTCAAGCCTTGATTTTCCACCATTCCCCC
ACATGTCTCATCTGCACGTGATTTACTTAACTCTAGGCGATGAGACCTAC
GAGGAAACGCATGGGTTTGGGAAGGAAAAGCAAAAGAAATCCGGTACACG
TACAGCCTGTACAAGAGTTTCGGGGAGAGGATACTCGTCGGACTGAAGAC
ACCACAACAAGGACACATGGTCGTAGCCGTCTGCCTCTTGTTCGGGAAAC
TGCTGGCCAGGTTGCCACGACCAAGAGAATGACGCCGATGCAATGGCCAC
CTTCTTGCGTGACGTTGTGCTTCGCGAGGTAGAGGACATGAAGGGTAGCT
GGACGCCCACCCCCGAGGACCGCTCAAATCCTGACAGCGGAGAGGTCAGC
ATCGGCATCACTGAGGAGCACGGCGGTGTTTTCAAGGTCAGGCTGTCGTT
CATCCGTTTCCTACGTATTCCACGTGTTCCACAATATACCAAGTAAGCAT
CCCGGCCGTTATATTTGCTGGAGATCACATGTTGGCTTTGCAACGGTGGA
CGCTGGATGCTCTCACCCTTTCAGCCCAGGCCCGGCCCGTGAAAAGTTGC
CTCAAAATTTCTCACAAGCCTCACGATCTTCGAACGACGTCCGCCCCCCC
TCGCTTGCCTTCGGTCAGGCGCTGGAGCGGTCTTTAGCCTCGGGGCGAGC
ACGCGACCAAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1085:753..1965+

>mRNA_Ecto-sp13_S_contig1085.758.1 ID=mRNA_Ecto-sp13_S_contig1085.758.1|Name=mRNA_Ecto-sp13_S_contig1085.758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1085:753..1965+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGTGGAGTTTTATGACGTGGTCAAAGGAATGGCCGAGGGCGCTGGC
CTGCTCTACCTATCGTGTCCGCCAGATCTGGAGGAGAGGGGTGATTTGGA
CGAGTACAGTGAGGACGGCGATGAGACCTACGAGGAAACGCATGGGTTTG
GGAAGGAAAAGCAAAAGAAATCCGGTACACGTACAGCCTGTACAAGAGTT
TCGGGGAGAGGATACTCGTCGGACTGAAGACACCACAACAAGGACACATG
GTCGTAGCCGTCTGCCTCTTGTTCGGGAAACTGCTGGCCAGGTTGCCACG
ACCAAGAGAATGACGCCGATGCAATGGCCACCTTCTTGCGTGACGTTGTG
CTTCGCGAGGTAG
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