mRNA_Ecto-sp13_S_contig1084.752.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1084.752.1
Unique NamemRNA_Ecto-sp13_S_contig1084.752.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1084.752.1 vs. uniprot
Match: A0A6H5L6Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y7_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.100e-16
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 2 
Query:  182 MVLLYQPRFEGRDRYDFTAFSVACPDVDRTILDLQRFPGKV 304
            MVLLYQPRFEGRDRYDFTAFSVACPDVDRTILDLQRFPGKV
Sbjct:    1 MVLLYQPRFEGRDRYDFTAFSVACPDVDRTILDLQRFPGKV 41
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1084.752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6Y7_9PHAE1.100e-16100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1084contigEcto-sp13_S_contig1084:3261..5625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size761
Hectar predicted targeting categoryother localisation
Exons3
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462558.4600284-UTR-Ecto-sp13_S_contig1084:3260..35901681462558.4600284-UTR-Ecto-sp13_S_contig1084:3260..3590Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1084 3261..3590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462558.470403-CDS-Ecto-sp13_S_contig1084:3590..38671681462558.470403-CDS-Ecto-sp13_S_contig1084:3590..3867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1084 3591..3867 -
1681462558.4818232-CDS-Ecto-sp13_S_contig1084:4720..47881681462558.4818232-CDS-Ecto-sp13_S_contig1084:4720..4788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1084 4721..4788 -
1681462558.4902697-CDS-Ecto-sp13_S_contig1084:5541..56251681462558.4902697-CDS-Ecto-sp13_S_contig1084:5541..5625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1084 5542..5625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1084.752.1prot_Ecto-sp13_S_contig1084.752.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1084 3591..5625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1084.752.1

>prot_Ecto-sp13_S_contig1084.752.1 ID=prot_Ecto-sp13_S_contig1084.752.1|Name=mRNA_Ecto-sp13_S_contig1084.752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
HTAHRAIDTPRARDGACCGRDGGPNLQHSGGRAGSSGIPPYNRGLRQMGS
RWPHCGERWLDGAAVPAALRGQGPLRLHRVLRGVPGRGPHHPGPAAVSRK
GCMAVQYGVIGAIRFFRLHNCTLWGAREEVGYGLRCIEGVVE*
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mRNA from alignment at Ecto-sp13_S_contig1084:3261..5625-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1084.752.1 ID=mRNA_Ecto-sp13_S_contig1084.752.1|Name=mRNA_Ecto-sp13_S_contig1084.752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2365bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1084:3261..5625- (Ectocarpus species13 EcNAP12_S_4_19m)
CACACAGCTCACCGCGCGATCGACACACCAAGGGCACGTGATGGAGCCTG
CTGCGGACGAGACGGAGGACCTAACCTCCAACATGTAAGCTTCTGTCCGT
TGCCATGCTCCTGCTCCTGATCGATATATGTTGGCACCACGCACAGCAGG
CAGTCTCATGTGTGTGTGTATCGGGATTCACAACACCAGACACGTTTTTC
ACCATCCGGTAGAGCAAGGGCAATAGCGCTCTGCCACTCTCGACCACTCC
CTCCAGCAGCTGCGTGTATGTGCACATCGCAGTCCCGGCGCAATTTTACC
GGGAGTTGGTTCGATTGTTGCGGCTACGCAGGCGTCAAGTCCGTCTCCGT
CGTTCTCCTACCGCAGCAGGAGGCAGTCTGCTGCTGGGACCGCCGTTTTT
GAAATATCTGGCGCTCTTGACCACCCTTGGTGCAATGAGCGATAGTTGTA
CGCGTATGTAGATCCCCAAGCACCCCGTGGTAGGCTGGAGACCTGTGTGC
AGTCCTGTCTCGTGGTGTTGGGCACGAGATGGGGCGTGTCTTGGAGGGTG
CGGGAGTGTAAGTTACGTTTCGACAGCAGTGTACCCAAGCAAGAGCCAGA
AAGCAGCCTGAAATTGCCGCATGCTCCATGCTGAGAATACCATAGCACCC
ACCTCTCTTTTGTATAGACAAACACGTCGTGTATCTGCGGCAGCTCTCCC
TGTAGGCAACACACATAGTGCAGACCAGCACCAGCAAGTCTCGTTTTTTT
ATCGCGCCATGCAAGCAGTCGAGGTGTGTGTGTTGTGGTACATCGCTCAA
GCATCTGTGCTGTTTTGCTTCGAACGTTGGTCGGCAGAGCGGAGGCAGAG
CTGGATCGTCCGGGATACCTCCCTACAACCGCGGATTGCGTCAAATGGGC
AGCAGGTATTCCAGTAGATGCGACTCGATCCACTGACCACTGTAAGCGCT
CTGGTGGTTGTCATGTGAGGTTTAATCATGATGCTTTTGCCCATGCACCA
CTACTGCATGTATGCGTTCGTGTGGTCTGGCGCCAGTCTCTATACCCACC
ATGCGGGGCAAGCACAAACCGGTGACGTTCATCGCAGGAGCTTTGTTGTT
GAATTCCTCGCCTTTCCTCCTGCGGTGCCTGCCTTTCCTCGAGAGTGGTT
CAACCGTCCATTTCCCCTGGTCGATCGTGATGTCGAACATACTCACGAAT
TACTTTGCGTTGCACCGTGTAATCCATTTCCCACCGCTTTTTTTTCAGTC
CAGTTAGAGAAGGGAGAATCGAGCTCCAGCCTGCTGGTGTCGTTTGTTGC
GGGGTTAAACCATTAGACCACCAGCACCATGCCACTTCATCCCCAGAAGG
TTCAACACTACCACCCGGTTGCATACACACGATAGACTGTTACTTTGAGT
AACTACCAGTGACAAGCCGCGGTCTGTGTGAGGTGCACCGCCGGGGACAC
AAGTCCGCACCAATGTAGGGTTTACTACATGAAATAGTGTAGGATGCCAT
TGGAAAGCGGGAGGGAGAGAGGAAGCCGTCTCCCCGACGAAATGAAAGCC
TTCGACTCCGCAGACGCTTTCTGTCAAACATCAAAATGCACCTGCTCTCG
TTGTCATAACATTAAAATGTTCCTGCTCACGTACGTCTCCTCCGCCGCCC
CCCGTCGGTTCCGAATCCCGTCACCCCTTCAATCTCCGGAGATCTGACCG
AAGCGTCTGGTCTCACGACGCAACTCTCACCTAAACCCATCGGTCCTGCC
TGCCACAGATGGCCGCATTGCGGTGAACGTTGGCTTGATGGTGCTGCTGT
ACCAGCCGCGCTTCGAGGGCAGGGACCGCTACGACTTCACCGCGTTCTCC
GTGGCGTGCCCGGACGTGGACCGCACCATCCTGGACCTGCAGCGGTTTCC
CGGAAAGGTTGCATGGCTGTACAATATGGTGTGATAGGAGCGATTCGTTT
TTTTCGTTTACACAACTGCACCTTATGGGGAGCACGAGAGGAAGTTGGGT
ACGGTCTGCGTTGCATCGAAGGAGTCGTTGAATAGGAGTCGTGAGCGTCA
GAGCGCGTGGGTAAATTCCTGGAAAACTCAGAGGTGGTGGACTCGCGGCA
AGACGCGAGAAGCGAGACGATACACCTTTGCATGGCTACCAACGCCCAAA
TCGATGCAGTATCCGCAGAGTAAGTAGTTTCGATTGGCGAAGGCGTGAGA
GCAACTGTCAATTTGTTCTCTTTCGTGATGACCGATACCCACTACACAGG
GCGGCATCGAAAAAAAAACTTCAGAAAAACTGTGGTGTGAATGTCACACA
AGACTCGAGGCGATTGCGGGGCGGGTGGGTATGAAAGGAGTTGAACGGAG
AAGGGTACGTGGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1084:3261..5625-

>mRNA_Ecto-sp13_S_contig1084.752.1 ID=mRNA_Ecto-sp13_S_contig1084.752.1|Name=mRNA_Ecto-sp13_S_contig1084.752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1084:3261..5625- (Ectocarpus species13 EcNAP12_S_4_19m)
CACACAGCTCACCGCGCGATCGACACACCAAGGGCACGTGATGGAGCCTG
CTGCGGACGAGACGGAGGACCTAACCTCCAACATAGCGGAGGCAGAGCTG
GATCGTCCGGGATACCTCCCTACAACCGCGGATTGCGTCAAATGGGCAGC
AGATGGCCGCATTGCGGTGAACGTTGGCTTGATGGTGCTGCTGTACCAGC
CGCGCTTCGAGGGCAGGGACCGCTACGACTTCACCGCGTTCTCCGTGGCG
TGCCCGGACGTGGACCGCACCATCCTGGACCTGCAGCGGTTTCCCGGAAA
GGTTGCATGGCTGTACAATATGGTGTGATAGGAGCGATTCGTTTTTTTCG
TTTACACAACTGCACCTTATGGGGAGCACGAGAGGAAGTTGGGTACGGTC
TGCGTTGCATCGAAGGAGTCGTTGAATAG
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