mRNA_Ecto-sp13_S_contig10839.751.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10839.751.1
Unique NamemRNA_Ecto-sp13_S_contig10839.751.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: D8LL78_ECTSI (Serine hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL78_ECTSI)

HSP 1 Score: 566 bits (1458), Expect = 1.970e-199
Identity = 296/338 (87.57%), Postives = 298/338 (88.17%), Query Frame = 1
Query:    1 MTTLRAVPPAAALATGGPGAPDVSNCRRSASRSLTLARAMASTQEEPVLRTRGGGG-DLGDADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRK----------------------------VSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
            M T RAV P AALATGG GAPDV N RRSA RS TLARAMASTQEE VLRTRGGGG DLGDADTGLSETDPEVW+IITAERRRQVCSIELIASENFASV VLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALL+PHDRIMGLDLPSGGHLTHGYYSDKRK                            VSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR
Sbjct:    1 MITPRAVSPTAALATGGRGAPDVGNRRRSARRSSTLARAMASTQEESVLRTRGGGGGDLGDADTGLSETDPEVWEIITAERRRQVCSIELIASENFASVAVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLKPHDRIMGLDLPSGGHLTHGYYSDKRKERLAIGDRSCGNNAPSSRGRVVNGLTAKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 338          
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A836CDU7_9STRA (Serine hydroxymethyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU7_9STRA)

HSP 1 Score: 412 bits (1059), Expect = 3.110e-139
Identity = 195/245 (79.59%), Postives = 217/245 (88.57%), Query Frame = 1
Query:  193 LSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
            LS+ DPEVW II AE+ RQV  IELIASENF S  VLEALGSIMTNKYSEGLPG RYYGGNEQ+D+ME LCQ RAL  + LDP+EW VNVQPYSGSPANFAVYTALL+PHDRIMGLDLPSGGHLTHGYYS K+K+SATSIYFESLPY+VD  TGL+DY+ + R+A+LFRPKL+IAGASAYSR+WDYARMR+IAD+VGA LM DMAHISGLVA GEAN PF H HVVT+TTHK+LRGPRSG+IF R
Sbjct:   77 LSQQDPEVWSIIQAEKERQVSGIELIASENFVSDAVLEALGSIMTNKYSEGLPGARYYGGNEQIDKMERLCQARALQTYNLDPSEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYSAKKKISATSIYFESLPYEVDATTGLLDYDEMARRAKLFRPKLLIAGASAYSRDWDYARMRQIADDVGALLMADMAHISGLVATGEANRPFEHCHVVTTTTHKTLRGPRSGMIFMR 321          
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A7S4BH98_CHRCT (Serine hydroxymethyltransferase n=3 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BH98_CHRCT)

HSP 1 Score: 394 bits (1013), Expect = 1.600e-132
Identity = 193/282 (68.44%), Postives = 224/282 (79.43%), Query Frame = 1
Query:   82 RSASRSLTLARAMASTQEEPVLRTRGGGGDLGDADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
            R  S+S+    A A +  +   R R  G    D +  L++ DP V++++  E RRQ   IELIASENFAS  V EALGS  TNKYSEG+PG RYYGGNE VD +E LCQ RAL+L+GL P EW VNVQPYSGSPANFA YTALL+PHDR+MGLDLPSGGHLTHGYY+++R+VSATSIYFESLPY+VD  TGLIDY+ LE +A+LFRPKL+IAGASAY R+WDYARMR+IAD VGAYL+ DMAHISGL AAG  NDPF HS VVTSTTHKSLRGPR+G+IF R
Sbjct:   30 RRTSQSIVACAAAAHSGVQTAPRARRTGAP--DVNGVLAKADPAVYELVELEARRQFEGIELIASENFASAAVREALGSCFTNKYSEGMPGARYYGGNEHVDTLERLCQSRALALYGLSPDEWGVNVQPYSGSPANFAAYTALLQPHDRVMGLDLPSGGHLTHGYYNERRRVSATSIYFESLPYEVDASTGLIDYDALEARAKLFRPKLLIAGASAYPRDWDYARMREIADSVGAYLLNDMAHISGLAAAGACNDPFAHSDVVTSTTHKSLRGPRAGMIFYR 309          
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A7S4F1F3_CHRCT (Serine hydroxymethyltransferase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F1F3_CHRCT)

HSP 1 Score: 387 bits (993), Expect = 1.420e-131
Identity = 179/252 (71.03%), Postives = 214/252 (84.92%), Query Frame = 1
Query:  172 LGDADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
            LG+A  GL + DPE++ ++ +E++RQV  IELIASENF S  V+E LGS MTNKYSEG+PG RYYGGNE VD++E +C+DRAL+ FGLD   W VNVQPYSGSPANFAVYTALL PHDR+MGLDLPSGGHLTHGYY+ K+K+SATSIYFESLPY VD ETG++DY+ +E+ A +FRPK+IIAGASAY R+WDYARMRKI D  GA+LM D+AHISGLVA GEAN PFP+  +VT+TTHKSLRGPR+G+IF R
Sbjct:   14 LGEA--GLKDWDPEIYNLVVSEKKRQVHGIELIASENFTSKSVMECLGSCMTNKYSEGMPGARYYGGNEFVDQVENICRDRALTAFGLDSKGWGVNVQPYSGSPANFAVYTALLNPHDRVMGLDLPSGGHLTHGYYTAKKKISATSIYFESLPYHVDSETGIVDYDHMEKTAMVFRPKMIIAGASAYPRDWDYARMRKICDATGAFLMADIAHISGLVATGEANSPFPYCDIVTTTTHKSLRGPRAGMIFFR 263          
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: R1DZ60_EMIHU (Serine hydroxymethyltransferase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZ60_EMIHU)

HSP 1 Score: 391 bits (1005), Expect = 1.560e-131
Identity = 191/249 (76.71%), Postives = 211/249 (84.74%), Query Frame = 1
Query:  187 TGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAH--ISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
            + L   D  VW++I AE RRQ   +ELIASENFAS  V EALGS+MTNKYSEGLPG RYYGGNE VD +E LCQ RAL LFGLDP EW VNVQPYSGSPANFA +TALLEPHDRIMGLDLPSGGHLTHGYY+++R+VSATSIYFESLPY+V  ETGLIDY+GLE +ARLFRPKL+IAGASAY R+WDYARMR+IAD VGA LM DMAH  ISGLVAA +A DPF H  VVTSTTHKSLRGPR+G+IF R
Sbjct:   45 SALEREDGTVWELIEAEGRRQRDGLELIASENFASAAVREALGSVMTNKYSEGLPGARYYGGNEHVDALERLCQARALELFGLDPDEWGVNVQPYSGSPANFAAFTALLEPHDRIMGLDLPSGGHLTHGYYNERRRVSATSIYFESLPYEVSAETGLIDYDGLEERARLFRPKLLIAGASAYPRDWDYARMRRIADSVGALLMNDMAHAHISGLVAAEQAADPFEHCDVVTSTTHKSLRGPRAGVIFYR 293          
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: W7U0E7_9STRA (Serine hydroxymethyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0E7_9STRA)

HSP 1 Score: 392 bits (1006), Expect = 4.290e-131
Identity = 195/280 (69.64%), Postives = 222/280 (79.29%), Query Frame = 1
Query:   88 ASRSLTLARAMASTQEEPVLRTRGGGGDLGDADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
            A +S T+A ++ S  E P +               L++ DPEV  II AER RQ+  IELIASENFAS  VLEALGS+MTNKYSEG PG RYYGGNE VD +E LC+ RALSLF L    W VNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYY++KR+VSATSIYFESLPY+VD  TGL+DY+ L++ A LFRP+LI+AG SAY R+WDYAR+R IAD  GAYLMTDMAHISGLV+AG  N+PFP+S VVTSTTHKSLRGPRSG+IF R
Sbjct:   68 AQKSSTVAASVLSGHEAPSI---------------LADEDPEVAHIIQAERIRQISGIELIASENFASKAVLEALGSVMTNKYSEGRPGARYYGGNEHVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLVDYDELQKLASLFRPRLIVAGGSAYPRDWDYARLRAIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFR 332          
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A0M0JHA8_9EUKA (Serine hydroxymethyltransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHA8_9EUKA)

HSP 1 Score: 387 bits (994), Expect = 5.070e-130
Identity = 185/247 (74.90%), Postives = 208/247 (84.21%), Query Frame = 1
Query:  187 TGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
            + LS+ DPEV  +I  E  RQ   +ELIASENF S  V EALGS +TNKYSEGLPG RYYGGNE +D +E LCQ RAL L+GL P EW VNVQPYSGSPANFA YTALL+PHDRIMGLDLPSGGHLTHGYYS K+K+SATSIYFESLPY+VD  TGL+DY+GLE +ARLFRPKLIIAGASAY R+WDY RMR+IADEVGAYL+ DMAHISGL AA E ++PF H+ VVTSTTHKSLRGPR+G+IF R
Sbjct:   36 SSLSKQDPEVCSLIEKEAARQRDGLELIASENFVSPAVREALGSCLTNKYSEGLPGARYYGGNEHIDAIERLCQKRALDLYGLSPDEWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHLTHGYYSPKKKISATSIYFESLPYEVDATTGLVDYDGLEARARLFRPKLIIAGASAYPRDWDYGRMRQIADEVGAYLLNDMAHISGLAAARECHNPFEHADVVTSTTHKSLRGPRAGVIFYR 282          
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A7S4BH99_CHRCT (Serine hydroxymethyltransferase n=3 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BH99_CHRCT)

HSP 1 Score: 387 bits (993), Expect = 1.060e-128
Identity = 179/252 (71.03%), Postives = 214/252 (84.92%), Query Frame = 1
Query:  172 LGDADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
            LG+A  GL + DPE++ ++ +E++RQV  IELIASENF S  V+E LGS MTNKYSEG+PG RYYGGNE VD++E +C+DRAL+ FGLD   W VNVQPYSGSPANFAVYTALL PHDR+MGLDLPSGGHLTHGYY+ K+K+SATSIYFESLPY VD ETG++DY+ +E+ A +FRPK+IIAGASAY R+WDYARMRKI D  GA+LM D+AHISGLVA GEAN PFP+  +VT+TTHKSLRGPR+G+IF R
Sbjct:  101 LGEA--GLKDWDPEIYNLVVSEKKRQVHGIELIASENFTSKSVMECLGSCMTNKYSEGMPGARYYGGNEFVDQVENICRDRALTAFGLDSKGWGVNVQPYSGSPANFAVYTALLNPHDRVMGLDLPSGGHLTHGYYTAKKKISATSIYFESLPYHVDSETGIVDYDHMEKTAMVFRPKMIIAGASAYPRDWDYARMRKICDATGAFLMADIAHISGLVATGEANSPFPYCDIVTTTTHKSLRGPRAGMIFFR 350          
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A7S3CDG4_9CHLO (Serine hydroxymethyltransferase (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CDG4_9CHLO)

HSP 1 Score: 377 bits (967), Expect = 1.300e-127
Identity = 181/250 (72.40%), Postives = 210/250 (84.00%), Query Frame = 1
Query:  181 ADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDK-RKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
            A T L + DPEV+ +I  ER+RQ C IELIASENF S+GV++ALGS++TNKYSEGLPG RYYGGNE VD++E LC+ RAL  F LDP +W VNVQPYSGSPANFAVYTALL PH+R+MGLDLPSGGHLTHGYY+   +K+SATSIYFESLPY+V+++TG IDY+ LE +A  FRPK+II G SAY R+WDYAR R IAD+VGAYL+ DMAHISGLVAAGEA  PF +  VVTSTTHKSLRGPRSGLIF R
Sbjct:    8 ARTPLEQADPEVFGLIEEERQRQKCGIELIASENFTSLGVMQALGSVLTNKYSEGLPGARYYGGNEVVDKVENLCKKRALDAFDLDPEKWGVNVQPYSGSPANFAVYTALLNPHERVMGLDLPSGGHLTHGYYTKGGKKISATSIYFESLPYKVNKDTGYIDYDKLEEKALDFRPKMIICGGSAYPRDWDYARFRAIADKVGAYLLADMAHISGLVAAGEAASPFEYCDVVTSTTHKSLRGPRSGLIFFR 257          
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A7S0EK35_9EUKA (Serine hydroxymethyltransferase (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EK35_9EUKA)

HSP 1 Score: 376 bits (965), Expect = 3.440e-127
Identity = 182/246 (73.98%), Postives = 209/246 (84.96%), Query Frame = 1
Query:  193 LSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDK-RKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
            L   DPEV  +I AE  RQ   +ELIASENFAS  V EALGSIMTNKYSEGLPGKRYYGGNE VD++E LCQ RAL+L+GLD  EW VNVQPYSGSPANFA YTALLEPHDR+MGL LPSGGHLTHG+Y+ + +K+SATSIYFESLPY+V  +TGL+DY+GLE++A+LFRPKL+IAGASAY R+WDY RMR+I D VGA L+ DMAHISGLVAAG+  DPF HS VVT+TTHKSLRGPR+G+IF R
Sbjct:   38 LHGEDPEVAGLIDAEAARQRDGLELIASENFASPAVREALGSIMTNKYSEGLPGKRYYGGNEHVDQLERLCQARALALYGLDSEEWGVNVQPYSGSPANFAAYTALLEPHDRLMGLSLPSGGHLTHGHYTPRGKKISATSIYFESLPYEVHPDTGLVDYDGLEQRAQLFRPKLVIAGASAYPRDWDYGRMREICDGVGALLLCDMAHISGLVAAGQCADPFEHSDVVTTTTHKSLRGPRAGMIFYR 283          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL78_ECTSI1.970e-19987.57Serine hydroxymethyltransferase n=2 Tax=Ectocarpus... [more]
A0A836CDU7_9STRA3.110e-13979.59Serine hydroxymethyltransferase n=1 Tax=Tribonema ... [more]
A0A7S4BH98_CHRCT1.600e-13268.44Serine hydroxymethyltransferase n=3 Tax=Chrysotila... [more]
A0A7S4F1F3_CHRCT1.420e-13171.03Serine hydroxymethyltransferase n=1 Tax=Chrysotila... [more]
R1DZ60_EMIHU1.560e-13176.71Serine hydroxymethyltransferase n=2 Tax=Emiliania ... [more]
W7U0E7_9STRA4.290e-13169.64Serine hydroxymethyltransferase n=2 Tax=Monodopsid... [more]
A0A0M0JHA8_9EUKA5.070e-13074.90Serine hydroxymethyltransferase n=1 Tax=Chrysochro... [more]
A0A7S4BH99_CHRCT1.060e-12871.03Serine hydroxymethyltransferase n=3 Tax=Chrysotila... [more]
A0A7S3CDG4_9CHLO1.300e-12772.40Serine hydroxymethyltransferase (Fragment) n=1 Tax... [more]
A0A7S0EK35_9EUKA3.440e-12773.98Serine hydroxymethyltransferase (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10839contigEcto-sp13_S_contig10839:2259..5655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score567.8
Seed ortholog evalue3.2e-159
Seed eggNOG ortholog2880.D8LL78
Model size927
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.glycine hydroxymethyltransferase activity
EggNOG OGsCOG0112@1,KOG2467@2759
Ec32 ortholog descriptionserine hydroxymethyltransferase 2
Ec32 orthologEc-24_002640.1
EC2.1.2.1
Cds size927
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10839.751.1prot_Ecto-sp13_S_contig10839.751.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10839 2259..5655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462558.3728042-CDS-Ecto-sp13_S_contig10839:2258..25071681462558.3728042-CDS-Ecto-sp13_S_contig10839:2258..2507Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10839 2259..2507 +
1681462558.3837876-CDS-Ecto-sp13_S_contig10839:3426..35091681462558.3837876-CDS-Ecto-sp13_S_contig10839:3426..3509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10839 3427..3509 +
1681462558.3948011-CDS-Ecto-sp13_S_contig10839:4126..42471681462558.3948011-CDS-Ecto-sp13_S_contig10839:4126..4247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10839 4127..4247 +
1681462558.4024467-CDS-Ecto-sp13_S_contig10839:4394..45351681462558.4024467-CDS-Ecto-sp13_S_contig10839:4394..4535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10839 4395..4535 +
1681462558.4102845-CDS-Ecto-sp13_S_contig10839:4785..48601681462558.4102845-CDS-Ecto-sp13_S_contig10839:4785..4860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10839 4786..4860 +
1681462558.4186332-CDS-Ecto-sp13_S_contig10839:5203..52991681462558.4186332-CDS-Ecto-sp13_S_contig10839:5203..5299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10839 5204..5299 +
1681462558.430663-CDS-Ecto-sp13_S_contig10839:5493..56551681462558.430663-CDS-Ecto-sp13_S_contig10839:5493..5655Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10839 5494..5655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10839.751.1

>prot_Ecto-sp13_S_contig10839.751.1 ID=prot_Ecto-sp13_S_contig10839.751.1|Name=mRNA_Ecto-sp13_S_contig10839.751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp
MTTLRAVPPAAALATGGPGAPDVSNCRRSASRSLTLARAMASTQEEPVLR
TRGGGGDLGDADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGV
LEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEW
AVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVS
ATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDY
ARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRG
PRSGLIFSR
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mRNA from alignment at Ecto-sp13_S_contig10839:2259..5655+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10839.751.1 ID=mRNA_Ecto-sp13_S_contig10839.751.1|Name=mRNA_Ecto-sp13_S_contig10839.751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3397bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10839:2259..5655+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAACTCTGCGAGCCGTACCGCCAGCAGCAGCTTTAGCAACTGGAGG GCCGGGTGCTCCCGATGTCAGCAACTGCAGGAGATCGGCGAGTCGATCGT TGACGTTGGCGCGAGCGATGGCGTCAACTCAGGAAGAGCCTGTGTTGCGC ACGCGTGGCGGTGGGGGTGATCTGGGCGACGCTGACACAGGCCTTTCCGA GACGGACCCGGAAGTTTGGAAGATCATCACCGCGGAGCGGAGGCGACAGG TGGGCGGTGTGACTATCACGTACAGTCGACAAAGCAGAGAATAGGCAGCA TAATTGATCGGGCGAGATCTCCGGGCGTGCTCTTCATTCGATTTATCGAC AGAAACTTCTTGACATACCGCAGCAGTTTTGGCCGTGTCGGTTAGGAACC GAGTTGGTCTATTCGGCCCAACAGCCTATCCTGCGCGCGGCGAGGGAAAG AGAAGCTAGGAGACCAATACAACATAGACAAACTGTTTTATCTCTCTCTC TGACTGTTTATACGTAATACACCTTGTGTGTGGGCTGGCCGGTCCAGCAC CTGTGGGGATAAGATCTGGTAAATGTGAATACACTCGTGCGGGCTGTGAT GGATCGTCTGTATACACAGCAGTAGTTGCCCCCTCCTGTGAAGCAACATC CATTGCGGGTGGAGGCTCAATCTCTTGCTCAGGCTCGAAAAACCAGCCGA TCATGTTGATTCCACAATCGATGTTCTTTACTCTTGGTGCCTGTCAGATT CTGTAGGTTTTCAAACTGGTCGTTTTCCTCTCAGTGGTTTTCGTTTTAGA TGGCCCCGCCCGTCGTCCTAGAAGCACGATGACTCCTGTACTGGATGGAC TAGTACATACTACATGTGTAGTCAACCGCTGACGAGTAGTCCCACTTCCA GTGGTCATCGTGCTTGAATAAAAGCTAATTGGCTGACTGGTAGCCCATCG TCATTCGACAGTCCTCGTCACCCCTGTCTCCTTCTGCCGCCGCCGCCGCC GCCGCCGCCGTCTCGTTCTCCCTTTGATTGTTGCGGTCTGACTCTGAGTC CTACTGCTGTCTTTTTGACCCTGTCTATGGTTCTCGGTTGCTTGTGTCTT TTTCTGCTGCCATGGGCGGGTGCGCGACGCAACACGACGGTGCGCCTCGA CGATATGAGAAAAAATAGGTGTGCAGCATCGAGCTGATCGCGAGCGAGAA CTTCGCCTCCGTGGGGGTGCTGGAAGCTCTCGGTTCGATCATGACCAACA AGTGAGAGAGCGAGAGAGAGAGAGCTGAGAGAACGGAATACCGTGAGAAA GACCTCGTTTTTTGGAAACTGTGGTGCCTAGGGCGCTGTTTGTCTTGTTT TATTGTTGATGGTGGCGGTGGTATTCACATCGGTAGGCATTCGGCGCGGC AGATAGGACCATGAGACGAGACGAGGGGGGCGCCCGCGCGGGCGGAGGGA ATAGCAACCTTTTTTGGGATCTCATGGCAAGGCCAGCGGAAACAATGACT TGGTGAATCGGTCGGCTTGTCTTGTCTGATGTCCATACGATTGCCGTGGA TAGAGACCCATCAATTGACCCGCGTCAAAAAGTGCCTGGCGCCTGGCACA CCTTCGATCAGCTTGCTTTCCAAACGTTGGTCCGTCCGTTGTCCGTCCGT GATAGGTTGTGTGCTTACCGATGAGTATCTTACCCTCTTTTTTCGCCGGC GGCCTGCCATCGCCACCGCTCCGAAACCACCACAAACATAACCAACAACA GCAGCATCAGCATCAGCATCATCATCATCATCATCAGTAGCAACAGCATG TAACACCACTTTTACCACCACCACCACCAATATCAACCACACACACCGAC AACAACCCCATCGACCAGGTATAGCGAGGGCCTGCCGGGAAAGCGCTACT ACGGAGGGAACGAGCAGGTCGACAGGATGGAGACCCTTTGCCAGGACAGG GCTCTTTCTCTATTCGGCCTCGACCCGGCAGAATGGGCGGTAAGGGTAGA CAGCTTTCTCCGCAGCGTGTCGTGCTTTTTCACCGTACCGCCATTGTTGT ACCAAGGAAATGGTGGCTGTACGTCGGTTTCCATCTCCGACGACGAAGCA TTCCGCGTCCTGCCACGCTCTCTCGCCCTGCCCCAGGTGAACGTCCAGCC GTACTCGGGGAGCCCCGCCAACTTCGCGGTGTACACGGCCCTCCTCGAGC CGCACGACCGCATCATGGGGCTGGACCTCCCCTCGGGGGGTCACCTCACG CACGGGTACTACAGCGACAAGAGGAAGGTGATACCTACGGCAGTGGTGGT GGTGGTGGTGTTTAACGGCTTCTGTGATGTCGTCTGTCTGTGTGTGTTGT CGTCGTCGTCATCGTCGTCGTTTCTATCTTCGTTGTTGGCGTCTTCCCCG ATGAGTTTTCAGCCAACTTCCTCGTGGGGTACAGGTTTTCTACACGCCTA GAGTCTTATCGGCTACGAACATGCCCCCCCCCCCCCTTGCTGCTGTTTGT GTTTGCGGGCGTCGACCCTGTCGCCAGGTCAGCGCCACGAGCATATATTT CGAGAGCCTGCCCTACCAGGTGGATCAAGAGACCGGTCTCATCGACTACG AGGTCAGTGTGTTGGCCGTTCGTGCCTCCCTTCGGTCTACTTGGTTCCGT TTCAAGCAACATCCATGCCGTCCGACTACAAGATGTGCGGGTGGTGTTGC TCTTTTCGTCGCGGCTCTTTCTTTTAAACACCGTTCCAGTAACACAGAAC ACCATAACATGGAGCTAGCGATCAACAAAAATGTGTCGTTGGGTGACCCG GTTATCGCGATCGCTCGGGTGATCTTTGTGATATAGTATCCAGAGTCAAG CCTTCCTTCACGGGGCCTTTCTATTTTGTTTTGGGCTATTTTGTGCGACC CCGGACTCAACCCCCTGATGTGTGATGCCGCCGATGTAAATGAAGGGTTT GGAGCGCCAGGCGAGACTTTTTCGGCCTAAGCTGATCATCGCGGGGGCCA GCGCGTACTCGCGAGAGTGGGATTACGCGAGAATGCGGAAGGTGTGTTGC TGCTCTCGCTGCTGCTGCTGCTGATTGTTGTATCTGCACATCTTGGTACT GCCCATCACGGGACATCGTCGGTGGAGATTTATTCAATTGTATTTTCCTT TCCCGCGTAGTGTTCTGTTTGAAAGGCTGACCCTTTTACCACGCCACCCC CCCCCCCTCCGCCCCCCCATGTATTCAACGCAAAGATCGCTGACGAAGTC GGTGCCTACCTGATGACAGACATGGCACACATCTCGGGACTAGTCGCGGC CGGGGAGGCGAACGACCCTTTCCCCCACAGCCACGTGGTCACTTCCACCA CCCACAAGAGCCTCCGGGGGCCCAGATCCGGCCTTATATTTTCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10839:2259..5655+

>mRNA_Ecto-sp13_S_contig10839.751.1 ID=mRNA_Ecto-sp13_S_contig10839.751.1|Name=mRNA_Ecto-sp13_S_contig10839.751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10839:2259..5655+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAACTCTGCGAGCCGTACCGCCAGCAGCAGCTTTAGCAACTGGAGG
GCCGGGTGCTCCCGATGTCAGCAACTGCAGGAGATCGGCGAGTCGATCGT
TGACGTTGGCGCGAGCGATGGCGTCAACTCAGGAAGAGCCTGTGTTGCGC
ACGCGTGGCGGTGGGGGTGATCTGGGCGACGCTGACACAGGCCTTTCCGA
GACGGACCCGGAAGTTTGGAAGATCATCACCGCGGAGCGGAGGCGACAGG
TGTGCAGCATCGAGCTGATCGCGAGCGAGAACTTCGCCTCCGTGGGGGTG
CTGGAAGCTCTCGGTTCGATCATGACCAACAAGTATAGCGAGGGCCTGCC
GGGAAAGCGCTACTACGGAGGGAACGAGCAGGTCGACAGGATGGAGACCC
TTTGCCAGGACAGGGCTCTTTCTCTATTCGGCCTCGACCCGGCAGAATGG
GCGGTGAACGTCCAGCCGTACTCGGGGAGCCCCGCCAACTTCGCGGTGTA
CACGGCCCTCCTCGAGCCGCACGACCGCATCATGGGGCTGGACCTCCCCT
CGGGGGGTCACCTCACGCACGGGTACTACAGCGACAAGAGGAAGGTCAGC
GCCACGAGCATATATTTCGAGAGCCTGCCCTACCAGGTGGATCAAGAGAC
CGGTCTCATCGACTACGAGGGTTTGGAGCGCCAGGCGAGACTTTTTCGGC
CTAAGCTGATCATCGCGGGGGCCAGCGCGTACTCGCGAGAGTGGGATTAC
GCGAGAATGCGGAAGATCGCTGACGAAGTCGGTGCCTACCTGATGACAGA
CATGGCACACATCTCGGGACTAGTCGCGGCCGGGGAGGCGAACGACCCTT
TCCCCCACAGCCACGTGGTCACTTCCACCACCCACAAGAGCCTCCGGGGG
CCCAGATCCGGCCTTATATTTTCGAGG
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