mRNA_Ecto-sp13_S_contig10839.751.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: D8LL78_ECTSI (Serine hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL78_ECTSI) HSP 1 Score: 566 bits (1458), Expect = 1.970e-199 Identity = 296/338 (87.57%), Postives = 298/338 (88.17%), Query Frame = 1
Query: 1 MTTLRAVPPAAALATGGPGAPDVSNCRRSASRSLTLARAMASTQEEPVLRTRGGGG-DLGDADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRK----------------------------VSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
M T RAV P AALATGG GAPDV N RRSA RS TLARAMASTQEE VLRTRGGGG DLGDADTGLSETDPEVW+IITAERRRQVCSIELIASENFASV VLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALL+PHDRIMGLDLPSGGHLTHGYYSDKRK VSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR
Sbjct: 1 MITPRAVSPTAALATGGRGAPDVGNRRRSARRSSTLARAMASTQEESVLRTRGGGGGDLGDADTGLSETDPEVWEIITAERRRQVCSIELIASENFASVAVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLKPHDRIMGLDLPSGGHLTHGYYSDKRKERLAIGDRSCGNNAPSSRGRVVNGLTAKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 338
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A836CDU7_9STRA (Serine hydroxymethyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU7_9STRA) HSP 1 Score: 412 bits (1059), Expect = 3.110e-139 Identity = 195/245 (79.59%), Postives = 217/245 (88.57%), Query Frame = 1
Query: 193 LSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
LS+ DPEVW II AE+ RQV IELIASENF S VLEALGSIMTNKYSEGLPG RYYGGNEQ+D+ME LCQ RAL + LDP+EW VNVQPYSGSPANFAVYTALL+PHDRIMGLDLPSGGHLTHGYYS K+K+SATSIYFESLPY+VD TGL+DY+ + R+A+LFRPKL+IAGASAYSR+WDYARMR+IAD+VGA LM DMAHISGLVA GEAN PF H HVVT+TTHK+LRGPRSG+IF R
Sbjct: 77 LSQQDPEVWSIIQAEKERQVSGIELIASENFVSDAVLEALGSIMTNKYSEGLPGARYYGGNEQIDKMERLCQARALQTYNLDPSEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYSAKKKISATSIYFESLPYEVDATTGLLDYDEMARRAKLFRPKLLIAGASAYSRDWDYARMRQIADDVGALLMADMAHISGLVATGEANRPFEHCHVVTTTTHKTLRGPRSGMIFMR 321
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A7S4BH98_CHRCT (Serine hydroxymethyltransferase n=3 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BH98_CHRCT) HSP 1 Score: 394 bits (1013), Expect = 1.600e-132 Identity = 193/282 (68.44%), Postives = 224/282 (79.43%), Query Frame = 1
Query: 82 RSASRSLTLARAMASTQEEPVLRTRGGGGDLGDADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
R S+S+ A A + + R R G D + L++ DP V++++ E RRQ IELIASENFAS V EALGS TNKYSEG+PG RYYGGNE VD +E LCQ RAL+L+GL P EW VNVQPYSGSPANFA YTALL+PHDR+MGLDLPSGGHLTHGYY+++R+VSATSIYFESLPY+VD TGLIDY+ LE +A+LFRPKL+IAGASAY R+WDYARMR+IAD VGAYL+ DMAHISGL AAG NDPF HS VVTSTTHKSLRGPR+G+IF R
Sbjct: 30 RRTSQSIVACAAAAHSGVQTAPRARRTGAP--DVNGVLAKADPAVYELVELEARRQFEGIELIASENFASAAVREALGSCFTNKYSEGMPGARYYGGNEHVDTLERLCQSRALALYGLSPDEWGVNVQPYSGSPANFAAYTALLQPHDRVMGLDLPSGGHLTHGYYNERRRVSATSIYFESLPYEVDASTGLIDYDALEARAKLFRPKLLIAGASAYPRDWDYARMREIADSVGAYLLNDMAHISGLAAAGACNDPFAHSDVVTSTTHKSLRGPRAGMIFYR 309
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A7S4F1F3_CHRCT (Serine hydroxymethyltransferase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F1F3_CHRCT) HSP 1 Score: 387 bits (993), Expect = 1.420e-131 Identity = 179/252 (71.03%), Postives = 214/252 (84.92%), Query Frame = 1
Query: 172 LGDADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
LG+A GL + DPE++ ++ +E++RQV IELIASENF S V+E LGS MTNKYSEG+PG RYYGGNE VD++E +C+DRAL+ FGLD W VNVQPYSGSPANFAVYTALL PHDR+MGLDLPSGGHLTHGYY+ K+K+SATSIYFESLPY VD ETG++DY+ +E+ A +FRPK+IIAGASAY R+WDYARMRKI D GA+LM D+AHISGLVA GEAN PFP+ +VT+TTHKSLRGPR+G+IF R
Sbjct: 14 LGEA--GLKDWDPEIYNLVVSEKKRQVHGIELIASENFTSKSVMECLGSCMTNKYSEGMPGARYYGGNEFVDQVENICRDRALTAFGLDSKGWGVNVQPYSGSPANFAVYTALLNPHDRVMGLDLPSGGHLTHGYYTAKKKISATSIYFESLPYHVDSETGIVDYDHMEKTAMVFRPKMIIAGASAYPRDWDYARMRKICDATGAFLMADIAHISGLVATGEANSPFPYCDIVTTTTHKSLRGPRAGMIFFR 263
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: R1DZ60_EMIHU (Serine hydroxymethyltransferase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZ60_EMIHU) HSP 1 Score: 391 bits (1005), Expect = 1.560e-131 Identity = 191/249 (76.71%), Postives = 211/249 (84.74%), Query Frame = 1
Query: 187 TGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAH--ISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
+ L D VW++I AE RRQ +ELIASENFAS V EALGS+MTNKYSEGLPG RYYGGNE VD +E LCQ RAL LFGLDP EW VNVQPYSGSPANFA +TALLEPHDRIMGLDLPSGGHLTHGYY+++R+VSATSIYFESLPY+V ETGLIDY+GLE +ARLFRPKL+IAGASAY R+WDYARMR+IAD VGA LM DMAH ISGLVAA +A DPF H VVTSTTHKSLRGPR+G+IF R
Sbjct: 45 SALEREDGTVWELIEAEGRRQRDGLELIASENFASAAVREALGSVMTNKYSEGLPGARYYGGNEHVDALERLCQARALELFGLDPDEWGVNVQPYSGSPANFAAFTALLEPHDRIMGLDLPSGGHLTHGYYNERRRVSATSIYFESLPYEVSAETGLIDYDGLEERARLFRPKLLIAGASAYPRDWDYARMRRIADSVGALLMNDMAHAHISGLVAAEQAADPFEHCDVVTSTTHKSLRGPRAGVIFYR 293
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: W7U0E7_9STRA (Serine hydroxymethyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0E7_9STRA) HSP 1 Score: 392 bits (1006), Expect = 4.290e-131 Identity = 195/280 (69.64%), Postives = 222/280 (79.29%), Query Frame = 1
Query: 88 ASRSLTLARAMASTQEEPVLRTRGGGGDLGDADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
A +S T+A ++ S E P + L++ DPEV II AER RQ+ IELIASENFAS VLEALGS+MTNKYSEG PG RYYGGNE VD +E LC+ RALSLF L W VNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYY++KR+VSATSIYFESLPY+VD TGL+DY+ L++ A LFRP+LI+AG SAY R+WDYAR+R IAD GAYLMTDMAHISGLV+AG N+PFP+S VVTSTTHKSLRGPRSG+IF R
Sbjct: 68 AQKSSTVAASVLSGHEAPSI---------------LADEDPEVAHIIQAERIRQISGIELIASENFASKAVLEALGSVMTNKYSEGRPGARYYGGNEHVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLVDYDELQKLASLFRPRLIVAGGSAYPRDWDYARLRAIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFR 332
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A0M0JHA8_9EUKA (Serine hydroxymethyltransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHA8_9EUKA) HSP 1 Score: 387 bits (994), Expect = 5.070e-130 Identity = 185/247 (74.90%), Postives = 208/247 (84.21%), Query Frame = 1
Query: 187 TGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
+ LS+ DPEV +I E RQ +ELIASENF S V EALGS +TNKYSEGLPG RYYGGNE +D +E LCQ RAL L+GL P EW VNVQPYSGSPANFA YTALL+PHDRIMGLDLPSGGHLTHGYYS K+K+SATSIYFESLPY+VD TGL+DY+GLE +ARLFRPKLIIAGASAY R+WDY RMR+IADEVGAYL+ DMAHISGL AA E ++PF H+ VVTSTTHKSLRGPR+G+IF R
Sbjct: 36 SSLSKQDPEVCSLIEKEAARQRDGLELIASENFVSPAVREALGSCLTNKYSEGLPGARYYGGNEHIDAIERLCQKRALDLYGLSPDEWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHLTHGYYSPKKKISATSIYFESLPYEVDATTGLVDYDGLEARARLFRPKLIIAGASAYPRDWDYGRMRQIADEVGAYLLNDMAHISGLAAARECHNPFEHADVVTSTTHKSLRGPRAGVIFYR 282
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A7S4BH99_CHRCT (Serine hydroxymethyltransferase n=3 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BH99_CHRCT) HSP 1 Score: 387 bits (993), Expect = 1.060e-128 Identity = 179/252 (71.03%), Postives = 214/252 (84.92%), Query Frame = 1
Query: 172 LGDADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDKRKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
LG+A GL + DPE++ ++ +E++RQV IELIASENF S V+E LGS MTNKYSEG+PG RYYGGNE VD++E +C+DRAL+ FGLD W VNVQPYSGSPANFAVYTALL PHDR+MGLDLPSGGHLTHGYY+ K+K+SATSIYFESLPY VD ETG++DY+ +E+ A +FRPK+IIAGASAY R+WDYARMRKI D GA+LM D+AHISGLVA GEAN PFP+ +VT+TTHKSLRGPR+G+IF R
Sbjct: 101 LGEA--GLKDWDPEIYNLVVSEKKRQVHGIELIASENFTSKSVMECLGSCMTNKYSEGMPGARYYGGNEFVDQVENICRDRALTAFGLDSKGWGVNVQPYSGSPANFAVYTALLNPHDRVMGLDLPSGGHLTHGYYTAKKKISATSIYFESLPYHVDSETGIVDYDHMEKTAMVFRPKMIIAGASAYPRDWDYARMRKICDATGAFLMADIAHISGLVATGEANSPFPYCDIVTTTTHKSLRGPRAGMIFFR 350
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A7S3CDG4_9CHLO (Serine hydroxymethyltransferase (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CDG4_9CHLO) HSP 1 Score: 377 bits (967), Expect = 1.300e-127 Identity = 181/250 (72.40%), Postives = 210/250 (84.00%), Query Frame = 1
Query: 181 ADTGLSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDK-RKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
A T L + DPEV+ +I ER+RQ C IELIASENF S+GV++ALGS++TNKYSEGLPG RYYGGNE VD++E LC+ RAL F LDP +W VNVQPYSGSPANFAVYTALL PH+R+MGLDLPSGGHLTHGYY+ +K+SATSIYFESLPY+V+++TG IDY+ LE +A FRPK+II G SAY R+WDYAR R IAD+VGAYL+ DMAHISGLVAAGEA PF + VVTSTTHKSLRGPRSGLIF R
Sbjct: 8 ARTPLEQADPEVFGLIEEERQRQKCGIELIASENFTSLGVMQALGSVLTNKYSEGLPGARYYGGNEVVDKVENLCKKRALDAFDLDPEKWGVNVQPYSGSPANFAVYTALLNPHERVMGLDLPSGGHLTHGYYTKGGKKISATSIYFESLPYKVNKDTGYIDYDKLEEKALDFRPKMIICGGSAYPRDWDYARFRAIADKVGAYLLADMAHISGLVAAGEAASPFEYCDVVTSTTHKSLRGPRSGLIFFR 257
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Match: A0A7S0EK35_9EUKA (Serine hydroxymethyltransferase (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EK35_9EUKA) HSP 1 Score: 376 bits (965), Expect = 3.440e-127 Identity = 182/246 (73.98%), Postives = 209/246 (84.96%), Query Frame = 1
Query: 193 LSETDPEVWKIITAERRRQVCSIELIASENFASVGVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYSDK-RKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSR 927
L DPEV +I AE RQ +ELIASENFAS V EALGSIMTNKYSEGLPGKRYYGGNE VD++E LCQ RAL+L+GLD EW VNVQPYSGSPANFA YTALLEPHDR+MGL LPSGGHLTHG+Y+ + +K+SATSIYFESLPY+V +TGL+DY+GLE++A+LFRPKL+IAGASAY R+WDY RMR+I D VGA L+ DMAHISGLVAAG+ DPF HS VVT+TTHKSLRGPR+G+IF R
Sbjct: 38 LHGEDPEVAGLIDAEAARQRDGLELIASENFASPAVREALGSIMTNKYSEGLPGKRYYGGNEHVDQLERLCQARALALYGLDSEEWGVNVQPYSGSPANFAAYTALLEPHDRLMGLSLPSGGHLTHGHYTPRGKKISATSIYFESLPYEVHPDTGLVDYDGLEQRAQLFRPKLVIAGASAYPRDWDYGRMREICDGVGALLLCDMAHISGLVAAGQCADPFEHSDVVTTTTHKSLRGPRAGMIFYR 283 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10839.751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10839.751.1 >prot_Ecto-sp13_S_contig10839.751.1 ID=prot_Ecto-sp13_S_contig10839.751.1|Name=mRNA_Ecto-sp13_S_contig10839.751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp MTTLRAVPPAAALATGGPGAPDVSNCRRSASRSLTLARAMASTQEEPVLRback to top mRNA from alignment at Ecto-sp13_S_contig10839:2259..5655+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10839.751.1 ID=mRNA_Ecto-sp13_S_contig10839.751.1|Name=mRNA_Ecto-sp13_S_contig10839.751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3397bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10839:2259..5655+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10839:2259..5655+ >mRNA_Ecto-sp13_S_contig10839.751.1 ID=mRNA_Ecto-sp13_S_contig10839.751.1|Name=mRNA_Ecto-sp13_S_contig10839.751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10839:2259..5655+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |