mRNA_Ecto-sp13_S_contig10838.750.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10838.750.1
Unique NamemRNA_Ecto-sp13_S_contig10838.750.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10838.750.1 vs. uniprot
Match: D8LHZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHZ1_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 3.560e-119
Identity = 188/198 (94.95%), Postives = 195/198 (98.48%), Query Frame = 2 
Query:    2 GAGNATVDVVMFSEEVPVPSGVVSQSVWIEDNFIKEGSLINTTVNVYFNDDNNYCDGFGCTVNGYVNDYIEGQDSLSLCQVQDGGELYYENEPFDPYIPLGFDLPEGNEYYVTVVVIAKESTNPASNYTTMAEYGLDQVVVFQTDTTQPDNGARVLAGLSLMSLSWLILFNTLMASLGATSGGTQATMRETVVPATGW 595
            GAGNATVDVVMFSEEVPVPSGVV+QSVWIED+FIKEGSLINTTVNVYFNDDNNYC GFGCTV+GYVNDYIEGQDSLSLCQVQDGGELY+++EPFDPYIPL FDLPEGNEYYVTVVV AKES+NPASNYTTMAEYGLDQVVVFQTDTTQPDNGARVLAGLSLMSLSWLILFNTLMASLGATSGGTQATMRETVVPATGW
Sbjct:  155 GAGNATVDVVMFSEEVPVPSGVVTQSVWIEDSFIKEGSLINTTVNVYFNDDNNYCGGFGCTVDGYVNDYIEGQDSLSLCQVQDGGELYHKDEPFDPYIPLSFDLPEGNEYYVTVVVTAKESSNPASNYTTMAEYGLDQVVVFQTDTTQPDNGARVLAGLSLMSLSWLILFNTLMASLGATSGGTQATMRETVVPATGW 352
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10838.750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHZ1_ECTSI3.560e-11994.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10838contigEcto-sp13_S_contig10838:764..5478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3364
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_001100.1
Cds size567
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462558.2915738-UTR-Ecto-sp13_S_contig10838:763..7941681462558.2915738-UTR-Ecto-sp13_S_contig10838:763..794Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10838 764..794 +
1681462558.3412929-UTR-Ecto-sp13_S_contig10838:2712..54781681462558.3412929-UTR-Ecto-sp13_S_contig10838:2712..5478Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10838 2713..5478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462558.3009167-CDS-Ecto-sp13_S_contig10838:794..8861681462558.3009167-CDS-Ecto-sp13_S_contig10838:794..886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10838 795..886 +
1681462558.310083-CDS-Ecto-sp13_S_contig10838:1454..16501681462558.310083-CDS-Ecto-sp13_S_contig10838:1454..1650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10838 1455..1650 +
1681462558.32081-CDS-Ecto-sp13_S_contig10838:2433..27121681462558.32081-CDS-Ecto-sp13_S_contig10838:2433..2712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10838 2434..2712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10838.750.1prot_Ecto-sp13_S_contig10838.750.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10838 795..2712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10838.750.1

>prot_Ecto-sp13_S_contig10838.750.1 ID=prot_Ecto-sp13_S_contig10838.750.1|Name=mRNA_Ecto-sp13_S_contig10838.750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MFSEEVPVPSGVVSQSVWIEDNFIKEGSLINTTVNVYFNDDNNYCDGFGC
TVNGYVNDYIEGQDSLSLCQVQDGGELYYENEPFDPYIPLGFDLPEGNEY
YVTVVVIAKESTNPASNYTTMAEYGLDQVVVFQTDTTQPDNGARVLAGLS
LMSLSWLILFNTLMASLGATSGGTQATMRETVVPATGW*
back to top

mRNA from alignment at Ecto-sp13_S_contig10838:764..5478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10838.750.1 ID=mRNA_Ecto-sp13_S_contig10838.750.1|Name=mRNA_Ecto-sp13_S_contig10838.750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4715bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10838:764..5478+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGCCGGAAACGCAACGGTGGACGTGGTGATGTTCTCGGAGGAAGTCC
CCGTCCCATCTGGGGTGGTATCCCAATCAGTTTGGATCGAGGACAATTTC
ATCAAGGAGGGGAGTTTGATCAAGTGAGGCTTGTTGACAATCTCGTCCTG
CCTCCCTCTTCCTTTTCTGGGTCGTTGCTTGTGTGAAGCACTTACTGTAG
TGTGCGGTGTGCTCTGCGACGGTTTGGCTGAGTCTCTCCCTCTCTCTCAC
GGATCAGAGTACGTCAGGCGCTGCTTAGGCAAGCGTCGCTGATTGTGTGT
TGTGCTTCGATGGGACGAGTGCGCCGTCATTGACGCCCATACCGAAGGTT
TCCGCTTCCGTTGCCGTGACAATACTGGTGACATGCAGCTTTTGTGGCAG
TGTCGTCGTGGTTGTCGCCAGGCATCGGTCGGTAGGTAGGACTGGAGAGG
CGAAATCGCCTCCTTCTTTTTGGTTCCGGCACGCACGCAACGACGCTTTC
CTTCTCGTCTTCGGGCCCGCGCCTCCCGCAAGCAGTACTGAAGTTTTGCC
CCTGCAAAGATGTCGCCGCTGTTTTCTTTAAGGCCTTGTCGCACGAAGTT
TTGTCGATTATAACACGACGCGTCCTGCTGCTGCTACTGCGGCTGCTGCG
GTATTGCTGCCGTGTCTCTCGCGTACGGTGTTAATCGGCAGCACTACCGT
GAACGTTTACTTCAATGACGACAATAACTACTGCGATGGCTTCGGGTGCA
CGGTGAACGGGTACGTAAACGACTACATCGAGGGCCAGGACAGCTTGAGC
CTCTGCCAGGTCCAGGACGGAGGCGAGCTGTACTACGAGAACGAGCCCTT
CGATCCCTACATCCCCCTTGGCTTCGATCTCCCTGAGGTGAGAAGCGCTA
CGGACCGCAGAGCCATATGCCCCCCGCTGATCCCCCAGGTACGACCTCCC
TAAGGTGTGAGTGGGGAGGCCGAGCCAAAAAGCCCCCATGTAGAGAGAAG
AAGAGAAATACGCGTGCTGTTCTTGTCTTTTGTTAGGGGTCCCTCGGATA
GGGCAGCAAGGGGGTACCATCATCGTCTGTGACTATGATCCAAGCCACCA
GCAGAGCCCGGTCTTGAACGCCCCTAAGGCGAGTCTGCCTGCCTTGTGGA
TGAGATGTCCGATGCTTTGCGCTTGCGGCTCGGGCTGGCTGGCGTCGGTC
ACAGTGGCACGCAAGGCGACCTTTTCTCTCCTCCGTGGGGTCTTGCGATG
AGTGTGCGTGCCCTCGCCGACGTTGCTCAGCACTTGGTCACCGGCACAAC
TCCGATCCGGGGGGTGCGTGTACAACATTGCCTTGTGTGTGCCCCCGCCG
ACGTTGCTCAGTACTCGGTCGCTGCCGCGACCCAGGGTGTGCGAGCACAA
CATTTTCGGACGCGTTTGTTTCCTACAGCATTTTTTGGCATTACAAAACC
GCTTCATGAAGCGCTCAAAATTATAGGGCTTTTGCACGCTACAATGTGTT
CCAAGCGCGACCGACAACTTGCACCCCCCGCCCCGCCAAAGACGATTCGG
CGATGACGTCTTCTAAATCCGATCGGCTTTTGTTCTTGACGGACGCGCCG
TGTTCTTTTGTCGACCTCCCGCTGGGACGGGCGGCCCATCTTTACGCGGG
GACTGTTGGACCAACCACAGGGCAACGAGTACTACGTGACGGTAGTCGTT
ATCGCGAAGGAGTCAACAAACCCGGCCAGCAATTACACCACGATGGCAGA
GTACGGGCTGGATCAAGTGGTGGTGTTCCAGACCGATACCACTCAGCCGG
ACAACGGCGCACGGGTCCTGGCGGGCCTGTCGCTCATGTCCCTGTCCTGG
TTGATATTGTTCAACACGCTCATGGCATCGCTGGGAGCAACAAGCGGCGG
CACGCAGGCGACGATGCGTGAAACGGTAGTGCCGGCGACCGGCTGGTAGC
GCCCTCTGGATACAGTCGTGCCTCCGATAGAAGAGGGTACCTTGTACGAG
GAGGCCCCGATGTAAGAGGATCCAAATCGGTCGTCACGACCTCGACCCTC
CATGGTGTAATTGAGTACTCCGTTAATCCGGTTCAAGAGGGGGCTCCGAT
GTATGAGGTTGTCGAGCTGTTGTCACACCACTCTCTTACAACAAAGCCAC
GACTGTATGGTGAGACATGTCAAGTCAGTGGGAATTTATCTCACAGGCGT
TGGAATGGAGACTACCATCGAAGCCTGTAGAGGAATGGCCTATATGGAGG
GGTGCGGGGTCCAGTTCGCTGGTTGTTGGTTGGGATCGATCAAAGCGGTA
AACGATGATGATGGCTTTGTTGTTGGCGTAGGGCTTTCCTTGAGAGAGCG
CGTCTAGTTTTTGTACGTGATACTGTGTACTTCTATCAATTATCCGGGGG
GGTGGTTTTCAATGGTGCAAAGAGCGACGGCACGTTGGCCTTGGTTGATG
CGCATGAGGAGATGCCTTTCTCTTTCTCACTCTCTCTCTGAGCGACCTTG
TTATTTTGGTGGAGTTCGATGATTGTGTGTCATCAGAAAAGAGTACCGGA
AAGACGCGGCGGATCGGGACGGATGGATATGTGTGTGTCGCTGTTGGCTC
TACCCAAGTTTTCAGTACTTTTTTCCTTTGTGGTGGTTCACGTGTTGCTT
TGCTCGTAGGAAACGAGCAGTGATGGCTGGAAGAGAAGTTGGGGTCTCAC
GTACATGCGTTTTTTTTGTTCGGGAAGGAGTAGTGTCTGGAAAGGTACGT
AGATTGTGTTGTCTTGTTTTTCCGTGTGGGTTGTCCGCCATGAACTCGTT
GTTGTGCATTTAGTAGGCGTTTTCAGGACCGAGATTCTATTTCGTTGGTG
AACGGCGTGGTGCGAAGGTCGTAGCTTTGCCCACCCGAGGAGGGCACATT
TTTCACCCCTTATGAGGTAAGTTGGCAACAAAAGAGTTGAGTGATTCGAC
CAGCCCCTCAACGTCAGAGCCAAGAGGCGGCATACGTCAGGGTGGCGTAT
CCGCCGCTGGTGCCCTCAAGTGCAACCGCTCGTCGGAACGTTGCCGGAGG
TTTGTTGCCTTCTTGCAGTCGTGTGTACGTGCATGTGGATACTAATACTA
TCCACACCTGTCTGTCCTCCACAGTAGTTCCCTGTAGGGTTGTTCTTGCG
ATTCTCTTTTTTTCAACTTTGGATCTCCGATCCCGAGAATATCGTTTTTG
ACAAATTGTAATCACGTACCCGTAGTCTGCATACACTTTTGCTCCGAAGA
CCTAGCGCTCGGGTGTAGTCGATCAACCGGGTAACTGCTGTGCCACATCA
AGCTTGCTGAATAGCTTACGTTCGGGTTTAACTTAACCCAGCCAATCCAC
GGTGTCACTGTGTTACAGGCGCGTCTTTGCTAGCGCACGCCCCCTGTCAC
CGTGGATTTTAGTAGCTGAGGTTCCGTTTTAGTGTGAGTTTTCTTTTCTA
TTAGAGACGCTTTCTGCGTGTGTCTAGTGCTTGTCGCCGATGCTCAGATG
CGCTTGGTTGGGCCTACCTAGGTCGGTCTCATCCTCCCTTCCCCGTTTCG
GGTGCAGTGTGGTGTGACGGCGACATCTCCGCAGCGTTTTGTTGTTGTGC
CATCGACGGAAACACAAATCCCTCACGACTTCTTCACTGGGAGTATTTTT
TGACCCGTTTCCCCTCTTTTAGGAGTCCCCGATGTCGTAGACCCGGGTGG
GATGTTCTATTGTTGAATTTCTTCTTGGGTAGCTTTGTATATTATGAGAG
AGATCTCGTTCGTTGCTCTTGATGTATGTGTACTGCGGAGATTGTCTACT
ATCTACCAAAACTGACCTCTCGTCTCACGTTTTTTTTTCTTTTATGGTAA
ACGACCAGATATTACTTCGGAACGACGGCTACTTTGGTTTTTTTGCTTGC
GACATGAAGCGAATTAGCATGTGCTACTGCTGCTGCATGTGGTTCCCCCA
CCATCTGCCTCGGCGTACTCAACATGAACAACTTTTGTTTGTAATACCGC
GATTCGCGACGTTACAAACATGGTAATTGATAATTTTCTTCATGAGGATT
TCCCTACTGTACCCGTATTGCGGATTTTTTTCGTGTTTTCCCCCAGAACG
GAGGTTCTCGATCGGAGGTTTCTCGGTGAAGAAGGCAGGGTCGATGATGA
TCGTGATTGCATTCAGTAGATGCTCTTGTTTCTGATGGAAATAAATTGAT
TGCCCATCTTTTTCTCAATTGGATTGAATGAACTGTTCGAATAAACCCGT
GTCAGGCGAAAGGACAGTGATTGGTACGGTGGTACCACCACCGTGTGTTA
AAACCACCCGTGTCACGATGGCGGGGCGTCATCATGCACGTGTTCTTATT
GTACCATGCGATGGAGATCGATCTAGGAAAGGGAGATGTTTTCGTAGTCT
AGACCACGAGCGTGTTCGTTGATCGTGGTACCTAAATACGTTTAGTCTAG
ACACGACTACAAGGGGAGGTGACTTCGCAAACGCCCGTATAGTAGGTATT
TGCTGTACTAGCGAACTCTCCCGCCCCCTCTTGTTTATCGTGTGTCAAGT
TGAGCCATACATGCGGTAAAATGGGAAGGGCCGCAATCGATAGTAATTGT
TTTGTCTTCCCATGCGTCACGTGAATGAACGACTTCACCGGCTTTGGTGT
GTTTTTTTATTCTGTGTGCTTGAACCACGGTGAATCCATCTCTCTCTATC
GACGGTGAATCAAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10838:764..5478+

>mRNA_Ecto-sp13_S_contig10838.750.1 ID=mRNA_Ecto-sp13_S_contig10838.750.1|Name=mRNA_Ecto-sp13_S_contig10838.750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10838:764..5478+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCTCGGAGGAAGTCCCCGTCCCATCTGGGGTGGTATCCCAATCAGT
TTGGATCGAGGACAATTTCATCAAGGAGGGGAGTTTGATCAACACTACCG
TGAACGTTTACTTCAATGACGACAATAACTACTGCGATGGCTTCGGGTGC
ACGGTGAACGGGTACGTAAACGACTACATCGAGGGCCAGGACAGCTTGAG
CCTCTGCCAGGTCCAGGACGGAGGCGAGCTGTACTACGAGAACGAGCCCT
TCGATCCCTACATCCCCCTTGGCTTCGATCTCCCTGAGGGCAACGAGTAC
TACGTGACGGTAGTCGTTATCGCGAAGGAGTCAACAAACCCGGCCAGCAA
TTACACCACGATGGCAGAGTACGGGCTGGATCAAGTGGTGGTGTTCCAGA
CCGATACCACTCAGCCGGACAACGGCGCACGGGTCCTGGCGGGCCTGTCG
CTCATGTCCCTGTCCTGGTTGATATTGTTCAACACGCTCATGGCATCGCT
GGGAGCAACAAGCGGCGGCACGCAGGCGACGATGCGTGAAACGGTAGTGC
CGGCGACCGGCTGGTAG
back to top