mRNA_Ecto-sp13_S_contig1082.735.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1082.735.1 vs. uniprot
Match: D7FPX7_ECTSI (Dynein light chain flagellar outer dynein arm light chain LC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPX7_ECTSI) HSP 1 Score: 208 bits (530), Expect = 2.310e-66 Identity = 108/132 (81.82%), Postives = 108/132 (81.82%), Query Frame = 1
Query: 7 TTCSQAIKNWEAKNEASAEEATVVKLYCQMPPIAKLDNSLNSLKNCEQLSLSTNCIDRIIPLAGMXXXXXXXXXXXXXXKIEKLDDVAESLEELWISYNQVTTLDGXXXXXXXXXXYMSNNSVKSWAELDKL 402
TTCSQAIKNWEAKNEASAEEATVVKLYCQMPPIAKLDNSLNSLKNCEQLSLSTNCIDRIIPLAGM KIEKLDDVAESLEELWISYNQVTTLDG YMSNNSVKSWAELDKL
Sbjct: 2 TTCSQAIKNWEAKNEASAEEATVVKLYCQMPPIAKLDNSLNSLKNCEQLSLSTNCIDRIIPLAGMKKLKILSLGRNCIKKIEKLDDVAESLEELWISYNQVTTLDGLSNLSNLTRLYMSNNSVKSWAELDKL 133
BLAST of mRNA_Ecto-sp13_S_contig1082.735.1 vs. uniprot
Match: A0A835Z550_9STRA (Dynein light chain flagellar outer dynein arm light chain LC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z550_9STRA) HSP 1 Score: 178 bits (451), Expect = 2.270e-54 Identity = 87/132 (65.91%), Postives = 103/132 (78.03%), Query Frame = 1
Query: 7 TTCSQAIKNWEAKNEASAEEATVVKLYCQMPPIAKLDNSLNSLKNCEQLSLSTNCIDRIIPLAGMXXXXXXXXXXXXXXKIEKLDDVAESLEELWISYNQVTTLDGXXXXXXXXXXYMSNNSVKSWAELDKL 402
TTC+QAIK WEAKNEA AEEA VVKLYCQ+PPIAKLDNSLN+LKNCE LSLSTN IDR+IPLAGM +IEKL+DVA++LEELW+SYNQ+T+L+G Y+SNN++KSWAELD+L
Sbjct: 2 TTCAQAIKTWEAKNEAVAEEAPVVKLYCQLPPIAKLDNSLNTLKNCEHLSLSTNSIDRLIPLAGMKRLRILSLGRNVLKRIEKLEDVADTLEELWLSYNQITSLEGLGALASLTTLYVSNNNIKSWAELDRL 133
BLAST of mRNA_Ecto-sp13_S_contig1082.735.1 vs. uniprot
Match: A0A812XNK2_SYMMI (LC1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XNK2_SYMMI) HSP 1 Score: 169 bits (427), Expect = 1.030e-50 Identity = 81/133 (60.90%), Postives = 99/133 (74.44%), Query Frame = 1
Query: 4 QTTCSQAIKNWEAKNEASAEEATVVKLYCQMPPIAKLDNSLNSLKNCEQLSLSTNCIDRIIPLAGMXXXXXXXXXXXXXXKIEKLDDVAESLEELWISYNQVTTLDGXXXXXXXXXXYMSNNSVKSWAELDKL 402
QTTC+QA+KNWEA N +AEEA +KLYCQ+PPI K+D+SLN+L+NCE+L+LSTN IDRIIPLAGM KIEKLDDVA +LEELW+SYNQ+ +LDG Y+SNN +K+WAELDKL
Sbjct: 2 QTTCAQALKNWEAANGTAAEEADYIKLYCQVPPIVKMDSSLNALRNCERLALSTNAIDRIIPLAGMSSLKILSLGRNQIKKIEKLDDVASTLEELWVSYNQINSLDGVNVLTNLAVLYISNNLIKNWAELDKL 134
BLAST of mRNA_Ecto-sp13_S_contig1082.735.1 vs. uniprot
Match: B8C6D5_THAPS (Leucine-rich repeat protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C6D5_THAPS) HSP 1 Score: 138 bits (348), Expect = 1.070e-38 Identity = 76/140 (54.29%), Postives = 94/140 (67.14%), Query Frame = 1
Query: 7 TTCSQAIKNWEA--KNEASAEEATVVKLYCQMPPIAKLDNS-LNSLKNCEQLSLSTNCIDRIIPLAGMXXXXXXXXXXXXXXKIEKLDDVAESLEELWISYNQVTTLDGXXXXXXXXXXYMSNNSVKSWAELDKLVSKDR 417
TTC+QAIKNWEA KNE S EEAT V L Q PPI KLD LN+LK C++LSLSTN I+R+I L GM KIEKL+DVA SL++LWISYNQ+++LDG Y SNN +KS++ELDKL + ++
Sbjct: 2 TTCAQAIKNWEANPKNEGSVEEATEVSLCFQAPPITKLDAKVLNNLKKCQKLSLSTNMIERMISLTGMSELKILSIGRNNIKKIEKLEDVASSLQQLWISYNQISSLDGLACVTGLTTLYCSNNLIKSFSELDKLKANEQ 141
BLAST of mRNA_Ecto-sp13_S_contig1082.735.1 vs. uniprot
Match: A0A1V9ZTY7_9STRA (Leucine-rich repeat protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTY7_9STRA) HSP 1 Score: 134 bits (336), Expect = 9.740e-37 Identity = 67/95 (70.53%), Postives = 75/95 (78.95%), Query Frame = 1
Query: 7 TTCSQAIKNWEAKNEASAEEATVVKLYCQMPPIAKLDNSLNSLKNCEQLSLSTNCIDRIIPLAGMXXXXXXXXXXXXXXKIEKLDDVAESLEELW 291
TTCSQAIK WEAK AS+EEA VVKLYCQ+PPIAKLDNSLN+LKNCE LSLSTN IDR+IPL+GM KIEKLDDV+++LEELW
Sbjct: 22 TTCSQAIKAWEAKENASSEEAPVVKLYCQIPPIAKLDNSLNTLKNCEHLSLSTNSIDRLIPLSGMKKLRILSLGRNQIKKIEKLDDVSDTLEELW 116
BLAST of mRNA_Ecto-sp13_S_contig1082.735.1 vs. uniprot
Match: A0A485L9X2_9STRA (Aste57867_18235 protein n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485L9X2_9STRA) HSP 1 Score: 130 bits (327), Expect = 1.270e-35 Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = 1
Query: 7 TTCSQAIKNWEAKNEASAEEATVVKLYCQMPPIAKLDNSLNSLKNCEQLSLSTNCIDRIIPLAGMXXXXXXXXXXXXXXKIEKLDDVAESLE 282
TTCSQAIK WEAK AS+EEA+V+KLYCQ+PPIAKLDNSLN+LKNCE LSLSTNCIDR+IPL+GM KIEKLDDV+++LE
Sbjct: 2 TTCSQAIKAWEAKENASSEEASVIKLYCQIPPIAKLDNSLNTLKNCEHLSLSTNCIDRLIPLSGMKKLRILSLGRNQIKKIEKLDDVSDTLE 93
BLAST of mRNA_Ecto-sp13_S_contig1082.735.1 vs. uniprot
Match: A0A7S3K2Z4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2Z4_9STRA) HSP 1 Score: 130 bits (327), Expect = 1.550e-35 Identity = 69/133 (51.88%), Postives = 92/133 (69.17%), Query Frame = 1
Query: 7 TTCSQAIKNWEAKNEASAEEATVVKLYCQMPPIAKLDNSLNSLKNCEQLSLSTNCIDRI-IPLAGMXXXXXXXXXXXXXXKIEKLDDVAESLEELWISYNQVTTLDGXXXXXXXXXXYMSNNSVKSWAELDKL 402
TTC+ AIK++E K+ +A EA +VKLY Q+PPI KLD SLN+L CE L LSTN ID+I I L G+ KIE+LDD+AE+LEELWISYNQ+++LDG ++SNN++K++AEL+KL
Sbjct: 3 TTCAAAIKSFEQKSGENAAEAKIVKLYGQIPPITKLDASLNNLTACEHLQLSTNSIDKISIALTGLKNLKILSLGRNVIKKIERLDDLAENLEELWISYNQISSLDGLSSLTNLTTLFISNNAIKNFAELEKL 135
BLAST of mRNA_Ecto-sp13_S_contig1082.735.1 vs. uniprot
Match: F0Y145_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y145_AURAN) HSP 1 Score: 127 bits (318), Expect = 3.730e-34 Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = 1
Query: 7 TTCSQAIKNWEAKNEASAEEATVVKLYCQMPPIAKLDNSLNSLKNCEQ----LSLSTNCIDRI-IPLAGMXXXXXXXXXXXXXXKIEKLDDVAESLEELWISYNQVTTLDGXXXXXXXXXXYMSNNSVKSWAELDKL 402
TTC+ AIK +E K +A +A +VKLYCQ+PPIAKLD+SLN+L CE+ L LSTN ID+I + G+ KIEKLDD+ +SLEELWISYNQ++ L+G YMSNN++K++AEL+K+
Sbjct: 2 TTCAAAIKKFEEKTGETASDAKIVKLYCQIPPIAKLDSSLNNLAACERAAAHLQLSTNNIDKIGLAFTGLKNLKILSLGRNVIKKIEKLDDLGDSLEELWISYNQISALEGLHAMTKLTTLYMSNNNLKNFAELEKI 138
BLAST of mRNA_Ecto-sp13_S_contig1082.735.1 vs. uniprot
Match: A0A2D4CDP6_PYTIN (Dynein light chain 1, axonemal n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CDP6_PYTIN) HSP 1 Score: 126 bits (317), Expect = 4.120e-34 Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 1
Query: 7 TTCSQAIKNWEAKNEASAEEATVVKLYCQMPPIAKLDNSLNSLKNCEQLSLSTNCIDRIIPLAGMXXXXXXXXXXXXXXKIEKLDDVAESL 279
TTC+QAIK WEAKN SAEEAT++KLYCQ+PPI KLDNSLN+LKNCEQLSLSTN IDR+IPL+GM KIEKLDDVA++L
Sbjct: 2 TTCAQAIKAWEAKNGTSAEEATIIKLYCQIPPINKLDNSLNTLKNCEQLSLSTNSIDRLIPLSGMKKLRILSLGRNQIKKIEKLDDVADTL 92
BLAST of mRNA_Ecto-sp13_S_contig1082.735.1 vs. uniprot
Match: A0A3R6ZXJ2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZXJ2_9STRA) HSP 1 Score: 129 bits (324), Expect = 1.970e-33 Identity = 64/91 (70.33%), Postives = 72/91 (79.12%), Query Frame = 1
Query: 7 TTCSQAIKNWEAKNEASAEEATVVKLYCQMPPIAKLDNSLNSLKNCEQLSLSTNCIDRIIPLAGMXXXXXXXXXXXXXXKIEKLDDVAESL 279
TTCSQAIK WEAK AS+EEA V+KLYCQ+PPIAKLDNSLN+LKNCE LSLSTNCIDR+IPL+GM KIEKLDDV++SL
Sbjct: 172 TTCSQAIKAWEAKENASSEEAAVIKLYCQIPPIAKLDNSLNTLKNCEHLSLSTNCIDRLIPLSGMKKLRILSLGRNQIKKIEKLDDVSDSL 262 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1082.735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1082.735.1 >prot_Ecto-sp13_S_contig1082.735.1 ID=prot_Ecto-sp13_S_contig1082.735.1|Name=mRNA_Ecto-sp13_S_contig1082.735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp KQTTCSQAIKNWEAKNEASAEEATVVKLYCQMPPIAKLDNSLNSLKNCEQback to top mRNA from alignment at Ecto-sp13_S_contig1082:482..2137- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1082.735.1 ID=mRNA_Ecto-sp13_S_contig1082.735.1|Name=mRNA_Ecto-sp13_S_contig1082.735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1656bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1082:482..2137- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1082:482..2137- >mRNA_Ecto-sp13_S_contig1082.735.1 ID=mRNA_Ecto-sp13_S_contig1082.735.1|Name=mRNA_Ecto-sp13_S_contig1082.735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1082:482..2137- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |