mRNA_Ecto-sp13_S_contig10815.731.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10815.731.1 vs. uniprot
Match: D7FPX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPX9_ECTSI) HSP 1 Score: 608 bits (1567), Expect = 7.730e-214 Identity = 317/345 (91.88%), Postives = 326/345 (94.49%), Query Frame = 3
Query: 588 MVELWISLIRNAACVLKSLLPAEYTVMQPLMAFPFPLFWSGGGAGKLEMFTGLEGLIGVLQLAGAGFNLCKGAKGLAGGVVMAEYIVRWRNALAEYGMGVEGKARGVAALSAVLKRQDAANNRRIIAGICQLVIGTGLVCLTCFSWKLVGIMTTATVVAILEVALAVLLTIGVTGVLRMWAISNKVQRLRQKPSAEAPPDADVVELVAPRSGSDMGGKWEPDVRVPPTVATLREHMEGMSNIEKAVSSSPL-EDYQAIGQAAKKQAVLDAFLISLNVAAFVGYGTIPLDVFFPQRSLLTTWLPPGPTAWWGNFVGDVAWTIEPITVFLAPYLVLRRAQPGKTKTS 1619
MVELWISLIRNAACVLKSLLPAEYT+MQPLMAFPFPLFWSGGGAGKLEMFTGLEGLIGVLQLAGAGFNLCKGAKGLAGGVVMAEYIVRWRNALAEY MGVEGKARGVAALS VLKRQDAANNRRIIAGICQLVIGTGL+CLTCFSWKLVGIMTTAT VAILEVALAVLLTIGVTGVLRMWAISNKVQRL+QKP AEAPPDADVVELVAPRSGSDMGGKWEPDVRVPPTVATLR +++ + +S L + QAIGQAAKKQAVLDAFLISLNVAAFVGYGTIPLDVFFPQRSLLTTWLPPGPTAWWGNFVGDVAWTIEPITVFLAPYLVLRRAQP KTKTS
Sbjct: 1 MVELWISLIRNAACVLKSLLPAEYTMMQPLMAFPFPLFWSGGGAGKLEMFTGLEGLIGVLQLAGAGFNLCKGAKGLAGGVVMAEYIVRWRNALAEYDMGVEGKARGVAALSVVLKRQDAANNRRIIAGICQLVIGTGLICLTCFSWKLVGIMTTATAVAILEVALAVLLTIGVTGVLRMWAISNKVQRLQQKPPAEAPPDADVVELVAPRSGSDMGGKWEPDVRVPPTVATLRTWKACLAS--RRLSRVVLWKTNQAIGQAAKKQAVLDAFLISLNVAAFVGYGTIPLDVFFPQRSLLTTWLPPGPTAWWGNFVGDVAWTIEPITVFLAPYLVLRRAQPSKTKTS 343
BLAST of mRNA_Ecto-sp13_S_contig10815.731.1 vs. uniprot
Match: A0A6H5JMJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ7_9PHAE) HSP 1 Score: 258 bits (658), Expect = 6.480e-80 Identity = 133/137 (97.08%), Postives = 133/137 (97.08%), Query Frame = 3
Query: 588 MVELWISLIRNAACVLKSLLPAEYTVMQPLMAFPFPLFWSGGGAGKLEMFTGLEGLIGVLQLAGAGFNLCKGAKGLAGGVVMAEYIVRWRNALAEYGMGVEGKARGVAALSAVLKRQDAANNRRIIAGICQLVIGTG 998
M ELWISLIRNAACVLKSLLPAEYTVMQPLMAFPFPLF SGGGAGKLEMFTGLEGLIGVLQLAGAGFNLCKGAKGLAGGVVMAEYIVRWRNALAEY MGVEGKARGVAALS VLKRQDAANNRRIIAGICQLVIGTG
Sbjct: 1 MAELWISLIRNAACVLKSLLPAEYTVMQPLMAFPFPLFSSGGGAGKLEMFTGLEGLIGVLQLAGAGFNLCKGAKGLAGGVVMAEYIVRWRNALAEYDMGVEGKARGVAALSVVLKRQDAANNRRIIAGICQLVIGTG 137
BLAST of mRNA_Ecto-sp13_S_contig10815.731.1 vs. uniprot
Match: A0A835ZBH9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBH9_9STRA) HSP 1 Score: 124 bits (310), Expect = 3.380e-27 Identity = 130/398 (32.66%), Postives = 166/398 (41.71%), Query Frame = 3
Query: 591 VELWISLIRNAACVLKSLLPAEYTVMQPLMAFPFPLFWSGGGAGKLEMFTGLEGLIGVLQLAGAGFNLCKGAKGLAGGVVMAEYIVRW------RNALAEYGMGVEGK----------------------ARGVAALSAVLKRQDAANNRRIIAGICQLVIGTGLVCLTCFSWKLVGIMTTATVVAILEVALAVLLTIGVTGVL---RMWAISNKVQRLRQKPSAEAPPDADVVELVAPRSGSDMGGKWEPDVRVPPTVATLREHMEGMSNIEKAVSSSPLEDYQAIGQAAKKQAVLDAFLISLNVAAFVGYGTIPLDVFFPQR---------SLLTTWLP--PGPTA--WWGNFVGDVAWTIEPITVFLAPYLVLRRAQPGKTKTS*I*GGGGHRRR 1652
+E+ I+L+RN ACV KSLLP V +P FP F + T L+ I LQL A + + KG GG+ W + G G +GK A +AA + +L+R+ AA RR++ G QL+I G V L K + + I EVALA LL + + + R+ A + RLR AP D +V ELVAPR G EP RV PT A R + V P A L+A L+ LNV AFVGY TIPL F P+ SLL W PG A WWGN GDVAW++EP + AP L+ GG G RRR
Sbjct: 4 LEVVIALLRNCACVAKSLLPHTSPVFEP-----FPGF---------KAITWLDAFIIALQLVAAVYYVQKGIVSTVGGLKDRANATAWLTVAGPEKGVDRTGSGADGKPEKKRKPSAADAAAEKDKAAQEAADMAAFAELLRRRKAAGIRRVLVGASQLIIAEGFVALALSGLKYMLFPRLVWSLTITEVALAYLLYVMLDEIRVARRLAAKARAAARLR----IAAPLDTEVAELVAPRIGQAPWALPEPP-RVAPTRAGARAAATALRAWRDGV---PRPRAAXXXXXXXXXAQLEAVLLLLNVVAFVGYATIPLTYFVPEDWANAAPAPLSLLVGWPLWWPGHEAASWWGNLAGDVAWSVEPALMLAAPLLI---------------GGVGARRR 364
BLAST of mRNA_Ecto-sp13_S_contig10815.731.1 vs. uniprot
Match: A0A6S9FG41_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FG41_HETAK) HSP 1 Score: 111 bits (278), Expect = 5.290e-23 Identity = 113/363 (31.13%), Postives = 168/363 (46.28%), Query Frame = 3
Query: 603 ISLIRNAACVLKSLLPAEYTVMQPLMAFPFPLFWSGGGAGKLEMFTGLEGLIGVLQLAGAGFNLCKGA--------KGLAGGVVMAEYIVRWRNALAEYGMGVEGKARGVAALSAVLKRQDAANNRRIIAGICQLVIGTGLVCLTCFSWKLVGIMTTATVVAILEVALAVLLTIGVTGVLRMWAISNKVQ-----RLRQKPSAEAPPDADVVELVAPRSGSDM-------GGKWEPDVRVPPTVATLREHMEGMSNIEKAVS-------SSPLEDYQA--IGQAAK--KQAVLDAFLISLNVAAFVGYGTIPLDVFFPQRSLLTTWLP---PGPT--AWWGNFVGDVAWTIEPITVFLAPYLV 1583
+SL+RNA CV KSL+ ++ P+M PF G + E +E +IG+LQL G F LC GA K + + E + R + EY + LS L ++ AA ++ GI +L IG G L +S+ ++ ++++EV+LAVLL G G+ W S VQ R RQ P P +A V L R GG+ T A +R + +++I+K + + LED++ + +A K +AV A++I LN+ A VGY IPL + P +L PG AWWGN GDVAWT+EP+++ AP L+
Sbjct: 10 VSLVRNALCVCKSLVAEDHWSRDPIMKAPF------FGGEEPEDVLIIEAVIGLLQLMGGVF-LCAGAVKKMLEARKEMTVAFSIQEEMDCTRLSWLEYVL-----------LSDSLDKEKAAKKQKYSEGIHELNIGVGFFFLCAWSFHSCSVVYLMLSLSLVEVSLAVLLWYGGKGIYAAWRNSQDVQLAYGRRRRQLPHRVNPGNARWVALKLHREADTRLDLAAARGGRER-------TAAEVRRVAKAITDIDKLLEDGAGIKWTKDLEDHRVEQLVEADKLVAEAVFTAWIIFLNIIAGVGYFFIPLTYYVPDEGTFAYYLWDLWPGHEFLAWWGNLAGDVAWTLEPLSLLAAPALL 347
BLAST of mRNA_Ecto-sp13_S_contig10815.731.1 vs. uniprot
Match: A0A7S2MNU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MNU7_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.120e-13 Identity = 96/362 (26.52%), Postives = 141/362 (38.95%), Query Frame = 3
Query: 573 TRRRRMVELWISLIRNAACVLKSLLPAEYTVMQPLMAF--PFPLFWSGGGAGKLEMFTGLEGLIGVLQLAGAGFNLCKGAKGLAGGVVMAEYIVRWRNALAEYGMGVEGKARGVAALSAVLKRQDAANNRRIIAGICQLVIGTGLVCLTCFS----------WKLVGIMTTATVVAILEVALAVLLTIGVTGVLRMWAISNKVQRLRQKPSAEAPPDADVVELVAPRSGSDMGGKWEPDVRVPPTVA---------TLREHMEGMSNIEKAVSSSPLEDYQAIGQAAKKQAVLDAFLISLNVAAFVGYGTIPLDVFFPQRS----LLTTWLPPGPTAWWGNFVGDVAWTIEPITVFLAPYLV 1583
TR +E ++L+RN CV+K L +PL + PFP T LE IG LQ+A FNL G ++ V + W A K + + ++ L AA N R + GIC+L IG G + L S W LVG +E AL VLL + + S +K +VV L+A D + PD+ P A L+ E +++ K + +A +A D L+ LN+ AF+GY P+ FFP ++T W ++GN +GD AWT+EP + P L+
Sbjct: 2 TRENYNMETVVALLRNGLCVIKDL-DLGGIASKPLESTQNPFP------------GITPLEICIGALQVAAIFFNLIGGFNDISIVGVHRPVLRAWARVTAGR------KEKQPSLMAQQLNAAQAATNTRFVVGICKLFIGVGFIPLAMCSFQNVFLWYVNWGLVG----------MEAALLVLLGYMCGDIAKTGKKSRDALSFAKKMPDVTSAPLEVVALLA-----DAVNEPVPDMPWPAPPAGYLETAANQELKRFKESVASKLKDSKDEAKANLEAQAYGDSLRAWFDVLLLVLNLLAFIGYFIFPVTFFFPDEKWVAEMVTYWPGHEYCEYYGNLLGDAAWTVEPALLLFVPRLI 329
BLAST of mRNA_Ecto-sp13_S_contig10815.731.1 vs. uniprot
Match: A0A6H5JS05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS05_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 1.360e-12 Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = -3
Query: 3 MSSPLALYATVMAFIFSSLCSTCSTAASLGTRRMATKRRKYNQVFSAAFLCSSSS 167
MSSPLALYATV IFSS CS CSTA+SLGTRRMATK+RKYNQVFSAAFLC SSS
Sbjct: 1 MSSPLALYATV---IFSSFCSMCSTASSLGTRRMATKQRKYNQVFSAAFLCGSSS 52 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10815.731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10815.731.1 >prot_Ecto-sp13_S_contig10815.731.1 ID=prot_Ecto-sp13_S_contig10815.731.1|Name=mRNA_Ecto-sp13_S_contig10815.731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=345bp MVELWISLIRNAACVLKSLLPAEYTVMQPLMAFPFPLFWSGGGAGKLEMFback to top mRNA from alignment at Ecto-sp13_S_contig10815:2..5234- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10815.731.1 ID=mRNA_Ecto-sp13_S_contig10815.731.1|Name=mRNA_Ecto-sp13_S_contig10815.731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5233bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10815:2..5234- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10815:2..5234- >mRNA_Ecto-sp13_S_contig10815.731.1 ID=mRNA_Ecto-sp13_S_contig10815.731.1|Name=mRNA_Ecto-sp13_S_contig10815.731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1035bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10815:2..5234- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |