mRNA_Ecto-sp13_S_contig10790.718.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10790.718.1 vs. uniprot
Match: A0A6H5KYM4_9PHAE (MYB protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYM4_9PHAE) HSP 1 Score: 1211 bits (3133), Expect = 0.000e+0 Identity = 778/917 (84.84%), Postives = 793/917 (86.48%), Query Frame = 1
Query: 1 FWSRGDVESALRAVRSGKAAGAVGRPKGSSNSXXXXXXXXXXXXKAGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------RVAAQSTAATXXXXXXXXXXXXKRSRPGRGVGGGGLAVELGGAAESTSDEDPRFWDKAGDGESESEDRDKVGTEGGGGVDADCKGRSWCGAAGASSSVFDFRRDHPGEKRGGSGKRSSGKAGLAGSPRPDRRDRVGIHADFMMPRECDDWAASMRDTANTPSKKPNLTGSSTDTLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRDGGGGQFGRSLLSPPRSAGKLTYGSGGGGRVWSSSPNGPATLGSHAGNSSTDSLEAARFSLSPFPRSCGG-LRMPHLRDKAWASPVRGDHAAGREAGHAEERDRKGVAKDNGPQQQGLVGGGLPTPSKSPRSRDWKAAVGDSEKRFFXXXXXXXXXXXXXXXXITPEEAREMAAKRSGRVGGGDQRQSPSSPGDPFGSWGRRERGGFRDDARDVAAGKDREAHRVETSSSWSCDKNKQEREDTTPPGVPRNPKCSGTR-APSHTTPSPPATSTDGSDADDTLQAAASLVSFQKPRVGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPKTSPPRGSPSFPARETGGGGRXXXXXXXXXXVAAGLRDPMETAYRAAGLEVGSRAEGGXXXXXXXXXXX--LGASAEAVKRKSGPSNGMFDAVSPTASVQESGTPYSVCRVDRKGRPNATPLVAASTDQKTENGSSXXXXXXXXXXXXXXXXXXXXKEEASAAGTCGAEPLCHTPLKPAAACRAAAPGAAARASGWSGSVSGPWATPPPMAMNMTIGTPCSGSKFRSADDDEESDYSDYETYCSVKPTPSKRVLSPPSATKRLFADVGDA 2712
F RGDV+SALRAVRSGKAAGAVGRPKGSSNS K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RV XXXXXXXX KRSRPG G AVELGG A+STSDEDPRFWDKAGD SESEDRD VGTEGGGGVDADCKGRSWCGA GASSSVFDFRRDHPG K GGSGKRSS +AGLAGSPRPDRRDRVGIHADFMM REC DWAASMRD ANTPSKKPNLTGSSTDTLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRDGGGGQFGRSLLSPPRSAGKL YGS GGGRVWSSSPNGPATLGSHAG+SSTDSLEAARFSLSPFPRS GG L M HLRDKAWASP+RG+ AAGRE GHAEERD KGVAKD GPQQQ LVGGGLPTPSKSPRSRDWKAAVGDSEKRFF ITP EAREMAAKRSGRVGGGDQRQS SSPGDPFG WGRRERG RDDARD AAGKDRE HRVETSSSWSCDK++QEREDTTPPGVPRNPKC GT APSHTTPSPPATSTD SDADDTLQAAASLVSFQKPRVGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLP+TSPPRG PSFP +ETGG XXXXXXXXXXVAAGLRDPMETAYRAAGLEVGS AEGGXXXXXXXXXXX LGASAEAVKRKSGP NGMFDAVSPTA VQESGTPYSVCRVDRKGR NATP AAS +QKTE+GS XXXXXXXXXXXXXXXXXXXX A TC AEPLCHTPLKPAAA RAAAP AAARASGW GSVSGPWATPPPMA+NMT+GTPCSGSKFRSADDDEESDYSDYETYCSVKPTP+KRVLSPPSATKRLFADVGDA
Sbjct: 229 FDLRGDVDSALRAVRSGKAAGAVGRPKGSSNSSKRVSSAAKKETKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATKKKTSAGAKRVXXXXXXXXXXXXXXXXRKKTKRSRPGTGG-----AVELGGTAQSTSDEDPRFWDKAGDENSESEDRDGVGTEGGGGVDADCKGRSWCGATGASSSVFDFRRDHPGGKGGGSGKRSSVEAGLAGSPRPDRRDRVGIHADFMMARECHDWAASMRDNANTPSKKPNLTGSSTDTLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRDGGGGQFGRSLLSPPRSAGKLMYGSEGGGRVWSSSPNGPATLGSHAGSSSTDSLEAARFSLSPFPRSGGGGLGMLHLRDKAWASPIRGNRAAGREGGHAEERDGKGVAKDKGPQQQELVGGGLPTPSKSPRSRDWKAAVGDSEKRFFAAAAANGAAAA-----ITPGEAREMAAKRSGRVGGGDQRQSTSSPGDPFGPWGRRERGESRDDARDAAAGKDREGHRVETSSSWSCDKSEQEREDTTPPGVPRNPKCLGTPCAPSHTTPSPPATSTDTSDADDTLQAAASLVSFQKPRVGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRGCPSFPDKETGGX-XXXXXXXXXXXVAAGLRDPMETAYRAAGLEVGSSAEGGXXXXXXXXXXXSFLGASAEAVKRKSGPCNGMFDAVSPTAPVQESGTPYSVCRVDRKGRRNATPHAAASAEQKTEHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXA-TCVAEPLCHTPLKPAAAGRAAAPEAAARASGWLGSVSGPWATPPPMAVNMTMGTPCSGSKFRSADDDEESDYSDYETYCSVKPTPTKRVLSPPSATKRLFADVGDA 1133
BLAST of mRNA_Ecto-sp13_S_contig10790.718.1 vs. uniprot
Match: D7G7U2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U2_ECTSI) HSP 1 Score: 1038 bits (2685), Expect = 0.000e+0 Identity = 632/695 (90.94%), Postives = 647/695 (93.09%), Query Frame = 1
Query: 676 MMPRECDDWAASMRDTANTPSKKPNLTGSSTDTLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRDGGGGQFGRSLLSPPRSAGKLTYGSGGGGRVWSSSPNGPATLGSHAGNSSTDSLEAARFSLSPFPRSCGG-----LRMPHLRDKAWASPVRGDHAAGREAGHAEERDRKGVAKDNGPQQQGLVGGGLPTPSKSPRSRDWKAAVGDSEKRFFXXXXXXXXXXXXXXXXITPEEAREMAAKRSGRVGGGDQRQSPSSPGDPFGSWGRRERGGFRDDARDVAAGKDREAHRVETSSSWSCDKNKQEREDTTPPGVPRNPKCSGT-RAPSHTTPSPPATSTDGSDADDTLQAAASLVSFQKPRVGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPKTSPPRGSPSFPARETGGGGRXXXXXXXXXXVAAGLRDPMETAYRAAGLEVGSRAEGGXXXXXXXXXXX-LGASAEAVKRKSGPSNGMFDAVSPTASVQESGTPYSVCRVDRKGRPNATPLVAASTDQKTENGSSXXXXXXXXXXXXXXXXXXXXKEEAS--AAGTCGAEPLCHTPLKPAAACRAAAPGAAARASGWSGSVSGPWATPPPMAMNMTIGTPCSGSKFRSADDDEESDYSDYETYCSVKPTPSKRVLSPPSATKRLFADVGDAETSVVRR 2733
MMPRECDDWAASMRDT+NTPSKKPNLTGSSTDTLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRDG GGQFGRSLLSPPRSAGKL YGSGG GRVWSSSPNGPATLGSHAG+SSTDSLEAARFSLSPFPRS G L M HLRDKAWASPVRGD AAG+E GHAEERD KGVAKD GPQQQGLVGGGLPTPSKSPRSRDWKAAVGDSEKRFFXXXXXXXXXXXXXXX ITPEEAREMAAKRS RVGGGDQRQSP+SPGDPFGSWGRRERGG RD ARD A GKDREAHRVETSSSWSCDK++QEREDTTPPGVPR+PKC GT RAPSHTTPSPPATSTD SDADDTLQAAASLVSFQKPR+GEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLP+TSPPRG PSFPA+ETGG XXXXXXXXXX AAGLRDPMETAYRAAGLEVGS AEGGXXXXXXXXXXX LGASAEAVKRKSGPSNGMFDAVSPTA VQESGTPYSVCRV+RKGRPNATP AAS DQKTE+GS XXXXXXXXXXXXXXXXXXXX AA TCGAEPLCHTPLKPAAA RAAAPG AARASGWSGSVSGPWATPPPM+MNMT+GTPCSGSKFRSADDDEESDYSDYETYCSVKPTPSKRVLSPPSATKRLFADVGDAET +VRR
Sbjct: 1 MMPRECDDWAASMRDTSNTPSKKPNLTGSSTDTLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRDGNGGQFGRSLLSPPRSAGKLMYGSGGRGRVWSSSPNGPATLGSHAGSSSTDSLEAARFSLSPFPRSGGXXXXXXLGMLHLRDKAWASPVRGDRAAGKEGGHAEERDGKGVAKDKGPQQQGLVGGGLPTPSKSPRSRDWKAAVGDSEKRFFXXXXXXXXXXXXXXX-ITPEEAREMAAKRSWRVGGGDQRQSPASPGDPFGSWGRRERGGSRDGARDAAGGKDREAHRVETSSSWSCDKSEQEREDTTPPGVPRHPKCLGTPRAPSHTTPSPPATSTDASDADDTLQAAASLVSFQKPRLGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRGPPSFPAKETGG--XXXXXXXXXXXXAAGLRDPMETAYRAAGLEVGSSAEGGXXXXXXXXXXXXLGASAEAVKRKSGPSNGMFDAVSPTAPVQESGTPYSVCRVERKGRPNATPPAAASADQKTEHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCGAEPLCHTPLKPAAAGRAAAPGMAARASGWSGSVSGPWATPPPMSMNMTMGTPCSGSKFRSADDDEESDYSDYETYCSVKPTPSKRVLSPPSATKRLFADVGDAETGLVRR 692 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10790.718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10790.718.1 >prot_Ecto-sp13_S_contig10790.718.1 ID=prot_Ecto-sp13_S_contig10790.718.1|Name=mRNA_Ecto-sp13_S_contig10790.718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=912bp FWSRGDVESALRAVRSGKAAGAVGRPKGSSNSSKRASSAAKKETKAGASAback to top mRNA from alignment at Ecto-sp13_S_contig10790:14..3816+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10790.718.1 ID=mRNA_Ecto-sp13_S_contig10790.718.1|Name=mRNA_Ecto-sp13_S_contig10790.718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3803bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10790:14..3816+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10790:14..3816+ >mRNA_Ecto-sp13_S_contig10790.718.1 ID=mRNA_Ecto-sp13_S_contig10790.718.1|Name=mRNA_Ecto-sp13_S_contig10790.718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2736bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10790:14..3816+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |